Hvit024703.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- ZEB2_1
- Assembly
- None
- Location
- KK962588.1:275108-293409[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.4 6.1e+02 2.1 1.3 2 23 517 539 516 539 0.83 2 14 0.078 11 7.6 0.5 2 23 587 609 586 609 0.95 3 14 0.0024 0.34 12.3 0.1 2 23 614 636 614 636 0.94 4 14 0.004 0.56 11.6 0.0 2 23 639 660 638 660 0.95 5 14 4.7e-05 0.0066 17.7 1.1 1 23 666 688 666 688 0.98 6 14 4.3e-06 0.0006 20.9 4.4 1 23 694 717 694 717 0.95 7 14 1.8 2.6e+02 3.2 2.8 5 23 730 748 728 748 0.95 8 14 0.0085 1.2 10.6 4.3 2 23 754 776 753 776 0.96 9 14 0.062 8.6 7.9 0.8 3 23 792 811 791 811 0.96 10 14 0.00019 0.026 15.8 1.1 1 20 817 836 817 839 0.92 11 14 0.00059 0.082 14.2 5.2 1 23 847 869 847 869 0.99 12 14 0.00083 0.12 13.8 3.9 1 23 875 897 875 897 0.97 13 14 1.9e-05 0.0026 18.9 6.5 1 23 903 925 903 925 0.98 14 14 0.0027 0.37 12.2 9.1 1 23 931 953 931 954 0.96
Sequence Information
- Coding Sequence
- TTGATGATGGAGGGCCACAACTCTGAACAGATGTGTCCTGTGTGCACACTGTACCTGCGACCAGGCATGGCACTCTCTGATCATCTGTTTACACATCCCAAAGACCAGGTGATAGAGGCTCTGGTGCGCCAAGTTAATAGTGGGGGTCAGATGTTGAGCGGAACCGCCACCATCAACACCAACAGTCAGTTCACTGCCATCACATACCGACAGTTTCAGACACTGACCACTAACGTGCCGGAGCCCAGCATCCCTATGATGCTCAACCCTTGCCTTGTCACACAACCCAATAGTCCCTTCACATCTGGAGTGATCAGATCTTCAGTGCCGCTCCTCTCGTACCCTTACTATCCACAACACTCACAGGAGCAGGAGCGAGTGGTAGAAAACAACACTCAGTGTTCATATTCATTTGCTACCCAAACGACACAGACGACTCAGACAAATTTACCCTTTGTGACACAACATTCACCTTTCAACGAAGCGGAGTGCGAGGAAGTGCAAGAGATTGATAATTCAACTGAAAACTATCAGCCTACTGAAGATCCTTTTCTGAACGAAAGAATAGAAGATAGAATCGACCCTCCAAAAGATGAATTTGGTAGTACAAACTTATCTAATATTCAAGAGTCTAgagaagaaatatttgtaaacaaaatcagtgATGTTCACAAATCCAGTGAAGATTCACTTATTGAAACTATTCATAATCAGACAGAAGATCCTTTTAATGATGAAAACATAGAAGATATTCAAGAAACTACAATTGATCCATTTGTTGATAACAGAATagtaattgaaaaagaaaaacagcTTGATAGAAGAGGGAATGGTTCAACTCAAGTAAAACATATAGATGATAATTTAATAGAAACCTCTCACAATTTAGGAACAGTAATATCCAATACCCACCGTTTGATAGCCAACGATCCATCGTTAGATTATGACCAGGATCTGCAACCCGATGACATGGACTATAATGACCATGCTTATGGCAACCTCAGTCCTAATAACAATTTAGGGTCCCCAGTTTCTGATGTCAGCAACTGGAGTGCAAGTTCAAATATCAGGGTCAGGAGAGACCTCAGCAACTTGGATGAACAAGGGAATAATCACATCCTTTATGTACAACCCAATTCTAATGCTGCAGAATACGTAACATCCGACCCATATGATGACGGGATGGAGCATCATACATCAGATGCTCAGCTGACTAACTTGGATGAGATGAATTATTCGGTGGTATTAAACTATGGGGATGGTCACCAACGAGTCAGTTTGAATATGGAAGATAAGGAAGACAACTCTGTGCATAGTACCCCTCTTAACATTCACAGTGATGAGCTGATGCCTCCCAGAGGTGAACTGTCTGGTCAAGAGAGTCTCGGAGCTACAGAAAACTCAGTTTGGGAGATACAGGATCATGGAGAAACGTCGTATCCTCTTCTGGAAAAGGAGCGCTGGCAGATGATGAGTTCTGTACAACAGGAAGAATTGAGTGAGAGCTATTCGAGTGAGGTAGTCTTGGCTGAACGTAACCACAGAGTGCAGTGTATGGAGTGTGATATGAAGTTCACTTGTATCAGGGAACGGAGGATTCATGTTCAAACAGTACACAAGACACCTTCTCACACACAAGTGAAAGTGGAGGAAGAGATACAGAACCGAGCGAACCGGTACAACAAACTGGGGAAGGCTCAGATAATCAAAGTCAAGCAAGAGAGAGGGCTCAACATCAAGACGGAAGCCACTGTCAAGACTTGTGCTGATTGTGGTCTCGAGTTGCAGTCCTTGAAGCAGTTGCGAATACACAGGAAGGAATTCCATGAAATGAAGAGGAAGTGTGATACTTGTGGAGCTGTGTTTATAGACAATATGTCGTACAAGGAGCACATTGCCAATGTGCATCCAATAGAGTGCAATGTGTGTGGTAAGCTTTTCCCCACCAAAGTGGCAGCAAATGCTCACGccaaaaatcatttgaaatataaacctTATCAGTGTACTTTGTGTGATAAATCTTTTATTTCGCGAAACAAACTTAGCGATCACAGTAACGTTCACTCAGGTGAAACTCCTTATAAGTGTCCAATGTGTGATCAGACTTTTAGGCATAACTCTAATTTGATCCAACACAAAAAGTTTTTCCATctcaaaatcaagaaaaaaattaaagattactttTGCCACTGTGGTGAAATCTTTCATTCAATCAAAAAACTACAATGGCACAAAGAAATTCATGATAGCAAACCAAAACAGTGCATGTATTGCAGTGAACGATATATTCACACCACCAGTCTGACAAGACATATACGACATGCGCACGACAGTACGTATCTGCCAAAGGCCACACGATCTCTCAACGTGCTCTGTCCCgtttgtaaaataacttgtatCCGATCCTCATTGGCGCAGCACATGAAAATTCATACCGGCGACAAGCCCTTCACTTGTAATGTATGCTCTAAGGAGTTTAACACAAATTGGAATCTACAAATGCACAAGTGGACTCATGCGTCACGTAACAGTAAACCATTCAAGTGCAAGCAGTGCAAGTGCGCATTCTACATGCAGAGCAGTTACCAGGCACATCTCCGGTCACATCGGAACATCCGGCCGTACACGTGCAACTACTGTGGACAACAGTTTATCCGCAAGTACAACTGTGTGCGACATGTCAAGGAGCATGAGATGAACAAGTCCTACTGTTGTGCTGTTTGTAACAAGACGTTCCACCGTAGTTATTATTTGACAGAACATATGAGAACTCACACCGGTGTTAAACCGTACACGTGTCATATATGTTCAAAAACATCCAGCACCAAATCTAACCATAATAAACACGTAAGGACTCACCATGCTCGTGAACCTGTCAATACTGAAGGTTAG
- Protein Sequence
- LMMEGHNSEQMCPVCTLYLRPGMALSDHLFTHPKDQVIEALVRQVNSGGQMLSGTATINTNSQFTAITYRQFQTLTTNVPEPSIPMMLNPCLVTQPNSPFTSGVIRSSVPLLSYPYYPQHSQEQERVVENNTQCSYSFATQTTQTTQTNLPFVTQHSPFNEAECEEVQEIDNSTENYQPTEDPFLNERIEDRIDPPKDEFGSTNLSNIQESREEIFVNKISDVHKSSEDSLIETIHNQTEDPFNDENIEDIQETTIDPFVDNRIVIEKEKQLDRRGNGSTQVKHIDDNLIETSHNLGTVISNTHRLIANDPSLDYDQDLQPDDMDYNDHAYGNLSPNNNLGSPVSDVSNWSASSNIRVRRDLSNLDEQGNNHILYVQPNSNAAEYVTSDPYDDGMEHHTSDAQLTNLDEMNYSVVLNYGDGHQRVSLNMEDKEDNSVHSTPLNIHSDELMPPRGELSGQESLGATENSVWEIQDHGETSYPLLEKERWQMMSSVQQEELSESYSSEVVLAERNHRVQCMECDMKFTCIRERRIHVQTVHKTPSHTQVKVEEEIQNRANRYNKLGKAQIIKVKQERGLNIKTEATVKTCADCGLELQSLKQLRIHRKEFHEMKRKCDTCGAVFIDNMSYKEHIANVHPIECNVCGKLFPTKVAANAHAKNHLKYKPYQCTLCDKSFISRNKLSDHSNVHSGETPYKCPMCDQTFRHNSNLIQHKKFFHLKIKKKIKDYFCHCGEIFHSIKKLQWHKEIHDSKPKQCMYCSERYIHTTSLTRHIRHAHDSTYLPKATRSLNVLCPVCKITCIRSSLAQHMKIHTGDKPFTCNVCSKEFNTNWNLQMHKWTHASRNSKPFKCKQCKCAFYMQSSYQAHLRSHRNIRPYTCNYCGQQFIRKYNCVRHVKEHEMNKSYCCAVCNKTFHRSYYLTEHMRTHTGVKPYTCHICSKTSSTKSNHNKHVRTHHAREPVNTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -