Basic Information

Insect: Homalodisca vitripennis
Gene Symbol: Rreb1
Assembly: None
Location: KK961497.1:5509459-5522380[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.8e-05 0.0094 17.2 0.8 1 23 106 128 106 128 0.99

2 15 1.2e-05 0.0017 19.6 0.1 1 23 144 166 144 166 0.97

3 15 7.5e-08 1e-05 26.5 2.8 1 23 172 194 172 194 0.99

4 15 1.4 1.9e+02 3.6 1.3 2 23 311 333 311 333 0.92

5 15 0.097 14 7.3 0.4 1 20 387 406 387 408 0.81

6 15 0.077 11 7.6 0.1 1 23 578 600 578 600 0.97

7 15 5.5e-06 0.00077 20.6 2.2 1 23 612 634 612 634 0.99

8 15 0.0047 0.66 11.4 4.3 1 23 640 663 640 663 0.97

9 15 0.00065 0.091 14.1 2.8 1 23 1089 1112 1089 1112 0.96

10 15 0.00077 0.11 13.9 0.5 2 23 1352 1373 1351 1373 0.97

11 15 0.12 17 6.9 4.5 1 23 1379 1402 1379 1402 0.97

12 15 0.0038 0.53 11.7 2.5 1 23 1438 1462 1438 1462 0.96

13 15 0.62 87 4.7 0.6 1 23 1545 1568 1545 1568 0.94

14 15 0.003 0.42 12.0 0.5 3 23 1616 1636 1614 1636 0.96

15 15 0.0069 0.96 10.9 5.9 1 23 1642 1664 1642 1664 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.8e-05	0.0094	17.2	0.8	1	23	106	128	106	128	0.99
2	15	1.2e-05	0.0017	19.6	0.1	1	23	144	166	144	166	0.97
3	15	7.5e-08	1e-05	26.5	2.8	1	23	172	194	172	194	0.99
4	15	1.4	1.9e+02	3.6	1.3	2	23	311	333	311	333	0.92
5	15	0.097	14	7.3	0.4	1	20	387	406	387	408	0.81
6	15	0.077	11	7.6	0.1	1	23	578	600	578	600	0.97
7	15	5.5e-06	0.00077	20.6	2.2	1	23	612	634	612	634	0.99
8	15	0.0047	0.66	11.4	4.3	1	23	640	663	640	663	0.97
9	15	0.00065	0.091	14.1	2.8	1	23	1089	1112	1089	1112	0.96
10	15	0.00077	0.11	13.9	0.5	2	23	1352	1373	1351	1373	0.97
11	15	0.12	17	6.9	4.5	1	23	1379	1402	1379	1402	0.97
12	15	0.0038	0.53	11.7	2.5	1	23	1438	1462	1438	1462	0.96
13	15	0.62	87	4.7	0.6	1	23	1545	1568	1545	1568	0.94
14	15	0.003	0.42	12.0	0.5	3	23	1616	1636	1614	1636	0.96
15	15	0.0069	0.96	10.9	5.9	1	23	1642	1664	1642	1664	0.98

Sequence Information

Coding Sequence: ATGCAGGACACAACCCCTTGTGAACTGGACACCTCCCCCGCCCATGCTCCTCCCACCATCCCCACCACAGCTACTAAACACGAAATGGCTACAAATCCAGTGCAAAGCCCTTCCCCAGCTGTGAAGGAGTCAGCAGAGGATGCTGTTCCAACCAATGCCAAAGACGACAACCAAGCCAAAGACAACAGCAGCATTTCCGAACAGAAGTCAGAAGACCCGAGTGCAGACAGCTGTACAAACACACAAAATCTAGTCGAAAATAGCCCTGATTACAAGGTTGAGCGAGAGGAAGTGAGCAGCAAGGAGGACACCCATTACACTTGTCCCATCTGTGACACGGTCGTGTTCTCTTCTCATGACTTCACCATACACATCCGCTCCCATAATTTCCTCTCAGAGGAGCTCCAGTATCTCTCGTCTGGAAAAGGATTCGCCTGTCAAGTTTGTGGCAAGGTGCTGAGTTCTGCAAGTTCTCTGGATCGTCACATGTTGGTGCATTCTGGAGAGCGTCCGTTTCAGTGCAAAATCTGTGGCATTTCATTCACCACCAACGGCAACATGCACCGCCACATGCGCACACATGCCTCTAGTGAGAATGGTGATAGCTTTAGCTATGAGAGTGATGCTAGCTCTGACAGTCCAGGCTCACCCAAAGCTCCCTCTCCTGCCCTAATAAACGTGAAGAGAAGACGAGTTTCCAGAACAACATCagaattcaataacaatatcataaCACTTTCGCCTCCTTCGAGTCAAGAGACAAACAAGAGGAAGTCTGATTCTGAAGATTACATCTCCACAAGGAAAAAGAAATGCGACAAGAAATTTCTAACAGAAAAATTTGACTGCGTCTTGTGTGATAAAACTGGCTTTCTCTCCTCGAATCTCCTTGAGACCCACATCGAAGAATGTCATCCAGACTACAAAGCAAAGTGTGATCCCTGTAATCTTGTTTTTAAGAGTCATCGAGTATTGAATCTACATCGATACATGGTCCATTATGCAGAAGTGAAGAAGCACTCTTTGGCAAATACAAAACAGGAAACTATTGGATTTAAAGATTTGACATTTGTTGATTTTTCAAGTGAAAAGTTTCCTCACATTGCCAGAGCAATGTGTGAGCAGAGTGTGCACCATGCTAGCAGCCTGTATCACAGATTCCAGTGTGACAAATGTGGTCGAGCATTTCCATGTGGATCTGCCCTCAGTATCCACCGTCAAGACTGTGGGCAGGAGAACTACGCATCATCTGGGGAGAGCTGCCATCAGGACAATGACTTGTCCTCTAGTGACAATGACACTCCAACTGATCTTAGCAGTGGAGACAAGAGAATGTCTTGGGGCAAAACTAAGGTCTCTGACAGCTCTGATGAAATTGAAGATGAACACAGAAGATACAATTTCTTTGCATGTCTCGATTTACAGAACAAGTCAgtaacaaatgtccaaaatcatgaTAATTCTCCTGGAAATGAGAAGTTCAAAAGAGAAtcttattacaaacataataatacagAGGGCAGGGATCTCGCAGATATCCAGAGCATTATCTCAGTTACATCAGCTGGAGGCCTTATACATGACTTGTCCAAGTCGCCTCAGCCCACAGTGCTAGAAGTCACCCCTCCAGACTCAGGCTCACGAATTGGAGTCTATGACTCTGCTGTGAATGATGAGGAACAACAGGATTGTTTTGCTGCAGAGTTCAGGAAAATGAAGTTGCGAGGGGAATTCCCATGTCGGCTTTGCAGTGCCATATTTCCAAACTTAAGAGCTTTGAAAGGCCATAATCGAGTACATTTATCAAGTAGTAGTGGTCATAACTCTGCCCCCTACAGGTGCAATATGTGTCCACACTTCAGTTCTGACAAATCTGCTCTAATTAGACACATGCGTACACATAATGGTGATAGACCCTATGAATGTGCTCTGTGTCATTATGCTTTCACCACAAAAGCCAACTGTGAACGTCATTTGAGAAACAGACATGCAAAAATGACCCGAGAAGAAGTTAAGAAGTCTATAATTTATCATCCATCAGAAGATCCTACTAATGAAATTGAACACAAACCAAATCGAGATGATGTTAAGCGCTCCTTATTTTCTGAGAAAGATACaccaaaacatattgaaaataaggAGAGCATTAAAACAGTAGAGAGattaccaaattttattaaacatactgGAGAAAAGAACTTAAGTTCTTTTGAGACAGTTCACCAACAAAAACCACCATCTGCATTTATACAAGTACAAAAGATGACTTATGGCCAACAGTTTGGTGGAATAGACAATGGGCAGAGAAAATGTTTAGATGTAGGCACAATGACTTATGAAGATACTGAATCAGACCATGCAACTGACACTCCTGTTAAAATGGAAATTGAGCGTGATGTACCATTGGACCTCTCCATGGATGTATTAGActtaagtaaaaagaaaaacagtacaccagaaaaaattaaagataaagaattGAGAGACAAGCTTGAGGAGGCTGGACCTCAAGATCTTTCAAAAAGATCAAACTCTGCTTTCGAAAATAACAACTACCCACTCAGTATTGAAACCGCAGAGAGACCAAAATTATCTTCAAATCTGCCTCCCAATTATCCTCAAGAACTACAGATTTCTACTCCTTCTCCGCATCATTCTTTTGAAAGAGAAAGTCCTGTTCCTCCCAATCCAGCTATGATACCAAAAATAGatctttctaaattttatagTCCAAGTGCCCACCCTTTCTACTTGAACAATGCTTCCACATTTCCACCATTCAGTACTACTGCATCTTTACCCCAAGGTCCTTACTCACCTTACTTTATTCCTCCACCTCCACCTGTTTTATTCCCAACAAATACTAACCAAGACTTTGTTGAGATGAAAGAAAGGCTTCAGAAAGAGCTGATTCGAGGTTTGCAGCTAACTTCTGGAGGATCTCTTGTTTTGGATCAGATTGCCATGGCTGATAGAATTCAAGCACTTCATCAACAAGCAATGGCTGAATTTAAATGGCAGATGGAAAACAACAAAGAAGAAAGAAAGTCTTTCTCCCCTTCATTGAACAAAGATGTTAAGCAATTAGTTCATGTAGAAAATGAAAAAGAAGTCAGGAACCAAGAGATACACCAACCAACAGTGCCTGAAAAGCTAGCACCACCTAAACCAAAACAAGACACATCAGCTTCAGTCAAAATGGTAATTAAGAATGGTGTTCTTATTCCAAAACAAAAACAGAGAAGATATCGTACTGAAAGACCTTTTTCATGTGAACATTGTTCAGCAAGATTCACTCTAAGGTCCAATATGGAAAGACATATCAAACAACAGCATCCACAATTTTGGACTCAAAGGCAAAGGAATGCAGCAAATTTGCCAGTGAGGAGAAATCACTCCTTGTCTTCTAAAGTACCTCAGTCTCTGCTTAACCATGGGCAGTTTTACTCTCACAACGGATTACCAGGATATAATGTAAAATCAGAGGATGAAGTATCTAGATCATCTGCTTCAAATGATCATGCTGTAACTGATAAGTTAGGTGTTGCCTCAGAAAATAAAATCTGCATATCTGAAGAAGTTAAACATGCCATAGCACAACagttaaaatcaaaacatactTCAAATGATAGCAATGAGGATGATAATGACGATGATCTCATGGATGAAGAAGAAGATGAGGATTTAATCATAGATGAAGAAGCTAGAGATGAAGAAATAAGTCaagctgaaaataataaaaaacttgaagAAGAAATAACATTGCGAAAAAAGTTATCAATGAAAGAAGAAAACCAAGACCTTGCTAGTGTTTCTCGTCTGCTAGACAATGCATCAACACAAACATTCCGTCAGTACTTCCATTCTGATGAAGATCATCCAGGAGGAGAAGGAAGTGAAGAAGATGAAGAAGGCCTGGTGGCAGCAGGCAGTGCTAGTGAAGGCTGCAATTCTGGCAGTGATGAGAACCGGTCTGAATCCGAGAATAATAGTGGACCGAGCACAACAGTGGTCAAAAAGAAGAGTGCTTACTCACTAGCCCCTAACAGAGTGTCCTGTCCGTACTGCTTCCGCAAGTTCCCATGGTCATCGTCACTTCGTCGTCACGTCCTCACCCACACCGGCCAGAAACCTTACAAATGTTCCTTCTGTCCCTTGTTGTTTACAACCAAGAGCAACTGTGACCGTCACCTGCTGAGAAAGCATGGGGGTGGCACCCCTGCATCAGTGGACAATCAACCTACTGCCCCAGTTGGCAGTGACTCCTCCGCAGCCCCTAACTACACTATGAGGAATGTTCCTGAAAGGCCCTACAAGTGTAAAAGCTGCCCCAGCTCAACATTCTCCACACTGAGCAATCTAAAGAAACATCTTTCAACAAAACATCAGAACTGCAGGAGTGAAGGAACGCAAAGTGGGTATGAAAGCCAAGGCAGTGTCAGCGAGGAAATAGAAGTCGTGGATAACGAGCAATGTAAAAACGAACGAGAGGTAGAAAAGGAAAAAAGAATCCCCATTGATCCCAGAGAAATACATCCAGGTCATTCTTCAGAAAGTGGTCAGTTTTATAAGTCACATCCTACCCTTGTGGACCGGAACCTAACGACAGCCTCACAGCCATCAGATTTACCTTTCAAATGTCACCTCTGTGAAGGGAGTTTTGGAGAAAGGCAGGAGGCACTGGATCATATCCGAGACCGCCACTATGATGATTTCCAGCTTTTGGTGTCCAAGGGAGCTTTGGAGGCTTCTGTTGAAGATATTCCAGGCCCAGAGGAGGGTGGGGAGGAAAGCCTAGAACAGCTTCGTGGAAAATTCCCTGACTATGCTAATAGAAAgGTGATGTGTGCCTTCTGTCTACGCCGTTTCTGGTCTGCTGAAGACTTGCGACGTCACATGCGTACCCACACAGGCGAGCGACCTTTCTCCTGTGACATCTGCCGCCGCCGCTTTACACTTAAGCACAGCATGCTTCGCCACCGCAAGAAGCACAACGGTGCTGCACCCGAAGAGACTTCCCCTGCCAGCGATGACGATGCAGGTCACACGACCAATCATAACAACAACAATGTCAAGCCATGGCTCGCCAAACGAACAGAGGACGAGTCAGATCTCATCAGCAACCTGCTTGGTATTCAGGACAAAACAATCGTTGACAAAATGCTTTTGTCAAAGTCAGCTGATGACGCAGCGAAACTGCTAGGTGTTCAGAAATAA
Protein Sequence: MQDTTPCELDTSPAHAPPTIPTTATKHEMATNPVQSPSPAVKESAEDAVPTNAKDDNQAKDNSSISEQKSEDPSADSCTNTQNLVENSPDYKVEREEVSSKEDTHYTCPICDTVVFSSHDFTIHIRSHNFLSEELQYLSSGKGFACQVCGKVLSSASSLDRHMLVHSGERPFQCKICGISFTTNGNMHRHMRTHASSENGDSFSYESDASSDSPGSPKAPSPALINVKRRRVSRTTSEFNNNIITLSPPSSQETNKRKSDSEDYISTRKKKCDKKFLTEKFDCVLCDKTGFLSSNLLETHIEECHPDYKAKCDPCNLVFKSHRVLNLHRYMVHYAEVKKHSLANTKQETIGFKDLTFVDFSSEKFPHIARAMCEQSVHHASSLYHRFQCDKCGRAFPCGSALSIHRQDCGQENYASSGESCHQDNDLSSSDNDTPTDLSSGDKRMSWGKTKVSDSSDEIEDEHRRYNFFACLDLQNKSVTNVQNHDNSPGNEKFKRESYYKHNNTEGRDLADIQSIISVTSAGGLIHDLSKSPQPTVLEVTPPDSGSRIGVYDSAVNDEEQQDCFAAEFRKMKLRGEFPCRLCSAIFPNLRALKGHNRVHLSSSSGHNSAPYRCNMCPHFSSDKSALIRHMRTHNGDRPYECALCHYAFTTKANCERHLRNRHAKMTREEVKKSIIYHPSEDPTNEIEHKPNRDDVKRSLFSEKDTPKHIENKESIKTVERLPNFIKHTGEKNLSSFETVHQQKPPSAFIQVQKMTYGQQFGGIDNGQRKCLDVGTMTYEDTESDHATDTPVKMEIERDVPLDLSMDVLDLSKKKNSTPEKIKDKELRDKLEEAGPQDLSKRSNSAFENNNYPLSIETAERPKLSSNLPPNYPQELQISTPSPHHSFERESPVPPNPAMIPKIDLSKFYSPSAHPFYLNNASTFPPFSTTASLPQGPYSPYFIPPPPPVLFPTNTNQDFVEMKERLQKELIRGLQLTSGGSLVLDQIAMADRIQALHQQAMAEFKWQMENNKEERKSFSPSLNKDVKQLVHVENEKEVRNQEIHQPTVPEKLAPPKPKQDTSASVKMVIKNGVLIPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWTQRQRNAANLPVRRNHSLSSKVPQSLLNHGQFYSHNGLPGYNVKSEDEVSRSSASNDHAVTDKLGVASENKICISEEVKHAIAQQLKSKHTSNDSNEDDNDDDLMDEEEDEDLIIDEEARDEEISQAENNKKLEEEITLRKKLSMKEENQDLASVSRLLDNASTQTFRQYFHSDEDHPGGEGSEEDEEGLVAAGSASEGCNSGSDENRSESENNSGPSTTVVKKKSAYSLAPNRVSCPYCFRKFPWSSSLRRHVLTHTGQKPYKCSFCPLLFTTKSNCDRHLLRKHGGGTPASVDNQPTAPVGSDSSAAPNYTMRNVPERPYKCKSCPSSTFSTLSNLKKHLSTKHQNCRSEGTQSGYESQGSVSEEIEVVDNEQCKNEREVEKEKRIPIDPREIHPGHSSESGQFYKSHPTLVDRNLTTASQPSDLPFKCHLCEGSFGERQEALDHIRDRHYDDFQLLVSKGALEASVEDIPGPEEGGEESLEQLRGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHNGAAPEETSPASDDDAGHTTNHNNNNVKPWLAKRTEDESDLISNLLGIQDKTIVDKMLLSKSADDAAKLLGVQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -