Hvit028766.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK963922.1:140915-154929[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.4 1.9e+02 3.6 2.1 1 11 98 108 98 110 0.92 2 9 0.00023 0.032 15.5 1.0 1 23 124 146 124 146 0.92 3 9 2.1e-06 0.00029 21.9 2.1 1 23 152 174 152 174 0.95 4 9 7.6e-07 0.00011 23.3 0.9 1 20 180 199 180 201 0.95 5 9 0.0012 0.17 13.3 6.0 1 23 216 239 216 239 0.92 6 9 7.6e-07 0.00011 23.3 4.3 1 23 251 273 251 273 0.97 7 9 1.5e-06 0.00021 22.4 3.3 2 23 306 328 305 328 0.97 8 9 0.0003 0.042 15.1 7.3 1 21 337 357 337 359 0.94 9 9 7.8e-06 0.0011 20.1 0.2 1 23 364 387 364 387 0.98
Sequence Information
- Coding Sequence
- TTGGGGGAACCAAGTCCTGAGGACTATGTGCTAATGAAAGAGGAAACTTTCAGCATTGATGCTAATAAAGTGAACAgTGCCGGATCAGTACGAGGGAAGTCAGGAGTTCTGGCAGATCATCTGGTGGAGTTCAACAATAACAGTGACTTAAGGGACAGAGATGTGGTGGAGATACAGCGAGTTCGCCAGGAACTACTCCCCCCCATGTGGGATGTGTACGAAAAGTCCACTCCTAACGAAACAGGAGAGCTTCAGGTGACTCATCGAAGATATATTGTAAGTAAAGGAGCATTTCCGTGTTCGCTATGTGGAGCCTGCTTCAGATTCGACCAGGGTTGTGAACGAGGTGAAGTGCCCGATAGTGGTCCTTATGATTGTATTGTCTGCCACAAAGTATTTCCTAAACGTAGTGCTTGGAAGAAACATCAAGCAACTCACGAAGATGTAAAACCTTTCCTGTGTCGTGAATGTGGGAAAGGGTTCAACCGTCAGGAACATCTATCTCGTCACTTGCTCAGCCACACCGCTACCCGGCCATTCATGTGCGAGGGTTGCGGCAAGTCCTATGCGCGTAAGGAACACTTGAACCGTCACCAGTTCAGTAGCCCTTCGTGTGCCGATCCGAACGTCGATCCTGTTCGACCGTTCACCTGTCCCACCTGCAATCACGGGTTCGTAAGAAAGGAACATCTCGTGAGACATTGCAAACGCGCTCATGACGTCGAATTAAACGACAATGAACCTAAACCGTTCACTTGTCAGATTTGTTCTAAAACTTTCACGAGAAGAGAACATCTACGCCGTCACAAAATAGTTCACGCTAAAGATGATAAATCGTCTTCTGTTAAGACCGAACCGGAAGACGAAATTTCACCCCCTCCGAGTCCGGACGATAAAAAGCCACTGGAACCCGTTAAATGTGAGATTTGCTTTAAGACCTTTTCTCGCAGATCTCATGTGTTGAGACACATGAAGCGGATCCACAACACAACAATATCTGGTGAAGTCCACCGATGCAATGTTTGCAACAAACAGTTCGGTAGAAAATATCACCTGGAACGCCACCAATTGTGTCATGCTAAACCCGAGTACGAGTGCGTAACTTGTGGAGAGAAGTTTGACCAAAGTGATCTCTTGGACAAGCACATGACAACTGTCCACGGCAACGCTGCTGTGGACAGCTATTTGTGGATGTAA
- Protein Sequence
- LGEPSPEDYVLMKEETFSIDANKVNSAGSVRGKSGVLADHLVEFNNNSDLRDRDVVEIQRVRQELLPPMWDVYEKSTPNETGELQVTHRRYIVSKGAFPCSLCGACFRFDQGCERGEVPDSGPYDCIVCHKVFPKRSAWKKHQATHEDVKPFLCRECGKGFNRQEHLSRHLLSHTATRPFMCEGCGKSYARKEHLNRHQFSSPSCADPNVDPVRPFTCPTCNHGFVRKEHLVRHCKRAHDVELNDNEPKPFTCQICSKTFTRREHLRRHKIVHAKDDKSSSVKTEPEDEISPPPSPDDKKPLEPVKCEICFKTFSRRSHVLRHMKRIHNTTISGEVHRCNVCNKQFGRKYHLERHQLCHAKPEYECVTCGEKFDQSDLLDKHMTTVHGNAAVDSYLWM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00645270;
- 90% Identity
- -
- 80% Identity
- -