Basic Information

Insect: Homalodisca vitripennis
Gene Symbol: -
Assembly: None
Location: KK961496.1:1446176-1492492[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00038 0.052 14.8 4.1 1 23 137 159 137 159 0.97

2 12 1.2e-05 0.0016 19.6 1.5 1 23 165 187 165 187 0.98

3 12 2.5e-05 0.0035 18.6 2.2 1 23 193 216 193 216 0.96

4 12 0.16 22 6.6 3.4 1 21 222 242 222 244 0.95

5 12 0.00012 0.016 16.4 1.9 1 23 250 272 250 272 0.99

6 12 1.3e-05 0.0018 19.4 1.2 1 23 278 300 278 300 0.98

7 12 0.0056 0.77 11.2 2.2 1 23 308 331 308 331 0.96

8 12 0.0056 0.77 11.2 2.2 1 23 345 368 345 368 0.96

9 12 0.00035 0.049 14.9 1.9 2 23 375 396 374 396 0.96

10 12 0.00036 0.051 14.9 0.3 2 23 403 424 402 424 0.97

11 12 1.3e-05 0.0019 19.4 4.8 1 23 430 453 430 453 0.96

12 12 1.7e-07 2.4e-05 25.4 2.0 1 23 467 489 467 489 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00038	0.052	14.8	4.1	1	23	137	159	137	159	0.97
2	12	1.2e-05	0.0016	19.6	1.5	1	23	165	187	165	187	0.98
3	12	2.5e-05	0.0035	18.6	2.2	1	23	193	216	193	216	0.96
4	12	0.16	22	6.6	3.4	1	21	222	242	222	244	0.95
5	12	0.00012	0.016	16.4	1.9	1	23	250	272	250	272	0.99
6	12	1.3e-05	0.0018	19.4	1.2	1	23	278	300	278	300	0.98
7	12	0.0056	0.77	11.2	2.2	1	23	308	331	308	331	0.96
8	12	0.0056	0.77	11.2	2.2	1	23	345	368	345	368	0.96
9	12	0.00035	0.049	14.9	1.9	2	23	375	396	374	396	0.96
10	12	0.00036	0.051	14.9	0.3	2	23	403	424	402	424	0.97
11	12	1.3e-05	0.0019	19.4	4.8	1	23	430	453	430	453	0.96
12	12	1.7e-07	2.4e-05	25.4	2.0	1	23	467	489	467	489	0.97

Sequence Information

Coding Sequence: ATGACTGTAGTCTCAGgTATTGCCGATCCTAATGCCGAAGTTGCAGATGGAAATGAAACATCATTTGTAATGCAAGTGGAAGGTGTTCCTGAAAATATTACAGGAGAAGAGGCTGCAAATGATGATGTGGTGGACGAGACAGGACAGATGATACTCACAGGATCTGACGGCTACCAGACCGTGAGGATCATGCCCACCGAGACCAACCCCGGAGAGGTCAGCTATGTGCTCATCGTACAACAGCCTGATGATGATAAAGACAAGGACGAAGATCCAGATTATACTGTATATGACTTCAATGAGGGCGAGGACCAGGAACCTGTCAGTGGAATGGAATCCGGGGATGAagatgataaaacaaaaattataaagctgCTGCCAAAGAAATCTCAAACTGTAACTCAAGCTCATATGTGTAACTACTGTAACTATACAAGTCCTAAAAGATACCTGCTGTCTCGACACATGAAGTCACACTCAGAAGAAAGGCCACACAAGTGCAGCGTGTGTGAGAGAGGGTTCAAGACGTTAGCATCTCTGCAGAATCATGTCAACACTCACACAGGAACCAAACCTCACAGGTGTAAATACTGTGACAGTGCCTTCACAACATCTGGTGAGCTGGTACGCCATGTGAGATACAAGCACACCCATGAGAAGCCCCACAAGTGTACGATCTGTGAGTACGCCAGTGTTGAGCTGAGTAAGATGAGGAACCATATGCGCTGCCACACAGGAGAGCGACCGTACCAGTGTCCGCACTGCACCTACGCAAGCCCGGACACGTTCAAGCTCAAACGTCATCTTAGGATACACACAGGAGAAAAACCGTATGAGTGCGATATCTGTCACGCCAGGTTCACACAGTCTAACAGTCTCAAGGCCCACAAACTTATACACAGTGCCGGCGACAAGCCTGTGTTCCACTGTGAACTGTGCCCGGCCACATGCGGCCGCAAGACTGACCTCAGGATACATGTGCAGAAGCTGCACACCTCAGACAAGCCACTGAAGTCCGGCGACAAGCCCGTGTTCCACTGCGAACTGTGTCCGGCCACATGCGGCCGCAAGACTGACCTCAGGATACACGTGCAGAAGCTGCACACCTCTGACAAGCCGCTCAAGTGTAGACAATGCGGCAAACAGTTCCCCGACAGATACACGTACAAGGTTCACAACAAATCACACGAAGGGGAGAAGTGCTGGAGATGTGAGCTGTGCCCTTACGCCTCGGTCTCCCAGAGACACCTAGAGTCTCACATGCTCATCCACACGGACCAGAAGCCCTATCATTGCGACAAGTGTGATCAGTCTTTCCGGCAGAAACAGCTACTTAAGAGGCATCAAAACCTATACCACAACCCTAACTACATACCACCGGCACCAAGAGAGAAGACTCACGAGTGTCCAGAATGCCAGAGGGCGTTTAGGCACAAAGGCAACCTGATCCGGCATATGTCCGTGCATGATCCAGAGTCAGCAGCCCATGAGAAGGCTATTGCCCTGAAAATTGGACGACAGAAAAAGGTCCAGATCATTGATGGTCAGCAGGTGGAAGTGATGCCAGGGGAGGACGAGGATGAAGAAGATGAAGATGTGGATGGGTCGATGATGGCTATGCAGGGATCGGACGGGCAACAGTATGTTGTTCTGGAAGTTATCCAACTACAGGATGGAGAGGGCCAGGTGGCGTTGATGGCAGGGCAAGGGATAGAGCAAGCGGTAGCAGCCCTACAGAGTGGTGCAGGTGGTACACAGGTGGTGGTCAGGAACCAACTTATGAACCAGCACATCACACCAGACGACCAATTGGAGGAAGAGGAAGAGGTGTTGCTCAGCTCTCAGCCCAAGGCTGTTCCACAGCAGAATGACATGCAGAACTGTTTTGGGTTTGATGAGGATGATGATGAGGAACCTGAAGTAAAATCTAAACCTGACATTCACATTCTGCAAAGTGCCATGCgaTTTCTGTTGAATTGGAAGTTCTGA
Protein Sequence: MTVVSGIADPNAEVADGNETSFVMQVEGVPENITGEEAANDDVVDETGQMILTGSDGYQTVRIMPTETNPGEVSYVLIVQQPDDDKDKDEDPDYTVYDFNEGEDQEPVSGMESGDEDDKTKIIKLLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHRCKYCDSAFTTSGELVRHVRYKHTHEKPHKCTICEYASVELSKMRNHMRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICHARFTQSNSLKAHKLIHSAGDKPVFHCELCPATCGRKTDLRIHVQKLHTSDKPLKSGDKPVFHCELCPATCGRKTDLRIHVQKLHTSDKPLKCRQCGKQFPDRYTYKVHNKSHEGEKCWRCELCPYASVSQRHLESHMLIHTDQKPYHCDKCDQSFRQKQLLKRHQNLYHNPNYIPPAPREKTHECPECQRAFRHKGNLIRHMSVHDPESAAHEKAIALKIGRQKKVQIIDGQQVEVMPGEDEDEEDEDVDGSMMAMQGSDGQQYVVLEVIQLQDGEGQVALMAGQGIEQAVAALQSGAGGTQVVVRNQLMNQHITPDDQLEEEEEVLLSSQPKAVPQQNDMQNCFGFDEDDDEEPEVKSKPDIHILQSAMRFLLNWKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -