Hvit020505.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK962165.1:816214-820855[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00052 0.073 14.4 0.7 3 23 137 158 136 158 0.94 2 10 0.003 0.42 12.0 0.7 1 23 164 187 164 187 0.94 3 10 0.021 2.9 9.4 3.6 1 23 194 216 194 216 0.97 4 10 1.7e-05 0.0024 19.0 0.3 2 23 229 251 228 251 0.93 5 10 3.6e-05 0.005 18.0 1.5 1 23 269 291 269 291 0.97 6 10 1.2e-06 0.00016 22.7 7.9 1 23 297 319 297 319 0.98 7 10 5e-05 0.0069 17.6 0.3 1 23 325 347 325 347 0.99 8 10 1.2e-06 0.00017 22.6 0.4 1 23 353 375 353 375 0.98 9 10 2.7e-06 0.00038 21.6 0.2 1 23 381 403 381 403 0.98 10 10 0.00025 0.035 15.4 2.6 1 23 409 432 409 432 0.95
Sequence Information
- Coding Sequence
- ATGGAATTGGAAGAACGGAGAGATTTGCTATGCAACTCTCCGGTTACCGACCCACTTGGTCCAGACAGTTTCGATAGTTTTCAGTGGGTAGAGGTCAAACAAGAGTTACCTGAAGATGTGGAAGTGTCTAAAATTACTTTGACTGAGCTGCCACTTAAAGTCGATGCAGTGACAGAAGTAGATGTGGAACAGATTGCTTCTGAGAAGTCTCCTCCACCTGTAGAAGTACCCCTTGCACCAGTTCCACCTGATGACCAAAGAGAAGAACTCAGTGTATCAGAAGAAGAGGACAGTGAGAATGATGACTGGGGCCAGGACTCTTGTATTGATGATTCAAGTTCTGAGCCTGACAACAGAAAATCTGAggAGAATGtgttgaaaaagaaaagaaaaaatcaCCCTCAAGACTGTGATATATGTGGTAAAAAATTGTCATCTAGAGGAAGCCTTCGATTACACAAGTTGAATAAGCATAAACAAAAGATGCAATTTAGTTGTGAATTGTGTGGTATGAAGTTTGATTTTCAACGGGAAGTTGTAAAACATAGGAATGACAGTCACAGACAGGAAGATGGACTTTTTTGTTGTGAAATATGCAGTAAGCGATTACCAGATTATCACAGCTTTCTTGTGCATGTCAAATCTCACATAAAGAACTGTAAAGAAGAAGAAGGATCAGACAAAGTCTGTAAAGAATGCGGCAAATCTTTTCAGGATGAAAATAGTCTGAAAATACATATTACACTTATCCACAGGATGGAAGTTGTTGGACTAAGGAAAAACCTTAAAACTCAAGAGAAAAACTTTATTTGCGACACATGTGGCAAACGATTTGCTTTCAACTGCCTCCTTCAGGACCACATAAATCTGCATACAGGACTAAAGCCATATTGTTGTCACAAGTGCGGAAAATCATTCTCTCAAAAAGCGACACTGAAGCAGCACACAAAGACGCACAGTGATGTTCGCCCCTTTCAGTGCGCTGAGTGTTCTCTGGGTTTCTATGGTAGGGGTGATCTTATGAAACACATAAGGAAACATACAGGCGAGCGGCCTTATGTATGTGAGATGTGTGGGGAGGGGTTCTCACGTAGTGGTCACCTCGGAGTTCATCGACGTTCACATACAGGTGAGCGGCCATACAGCTGCGATGTATGTGGACGAGCATTCACCAAGAGGGGAGATGTGGTCAGACACCGCCGCATCCACACTGGTGAGCTGCCGTACCTCTGTCAAGTCTGCGGCAAGAGTTTCCGTCAGTCCACTCAGTGTGCCAACCACATCAAGAGCCAACACCCAGACAATCTGATGCCTGTCTTTGTGGCCAAAAATCCTACTGCTTTCAACCAAAGGATGGAGTCACAGTTTATTTGctga
- Protein Sequence
- MELEERRDLLCNSPVTDPLGPDSFDSFQWVEVKQELPEDVEVSKITLTELPLKVDAVTEVDVEQIASEKSPPPVEVPLAPVPPDDQREELSVSEEEDSENDDWGQDSCIDDSSSEPDNRKSEENVLKKKRKNHPQDCDICGKKLSSRGSLRLHKLNKHKQKMQFSCELCGMKFDFQREVVKHRNDSHRQEDGLFCCEICSKRLPDYHSFLVHVKSHIKNCKEEEGSDKVCKECGKSFQDENSLKIHITLIHRMEVVGLRKNLKTQEKNFICDTCGKRFAFNCLLQDHINLHTGLKPYCCHKCGKSFSQKATLKQHTKTHSDVRPFQCAECSLGFYGRGDLMKHIRKHTGERPYVCEMCGEGFSRSGHLGVHRRSHTGERPYSCDVCGRAFTKRGDVVRHRRIHTGELPYLCQVCGKSFRQSTQCANHIKSQHPDNLMPVFVAKNPTAFNQRMESQFIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -