Hvit006286.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Homalodisca vitripennis
Gene Symbol
-
Assembly
None
Location
KK961663.1:2249372-2273933[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00044 0.061 14.6 6.3 1 23 9 31 9 31 0.97
2 10 0.0001 0.014 16.6 3.8 1 23 37 59 37 59 0.96
3 10 2.1e-06 0.0003 21.9 4.1 1 23 65 87 65 87 0.99
4 10 1.7e-06 0.00024 22.2 2.0 1 23 93 115 93 115 0.97
5 10 2.4e-05 0.0034 18.6 1.5 1 23 121 143 121 143 0.96
6 10 0.00095 0.13 13.6 0.1 1 23 149 171 149 171 0.97
7 10 0.0028 0.39 12.1 0.2 2 22 177 197 177 197 0.95
8 10 0.00012 0.017 16.4 0.0 2 23 284 305 283 305 0.97
9 10 4.6e-05 0.0065 17.7 4.5 1 23 337 359 337 359 0.97
10 10 1.6e-06 0.00022 22.3 2.2 1 23 369 391 369 391 0.97

Sequence Information

Coding Sequence
CTGGTACTGCCGAAGCAGCGGCCCCACAACTGCGAGGAGTGTGGCAAGACGTTCCTGATGAAGCACCACCTGTCGACGCACATGAGGGTCCACACTGGCGAGCGCCCACATGTCTGTCCCGAGTGTGGCAAGAGTTTCGCACTCAAACACTGTCTCAGCACGCACCTGCTGCTGCACACTGCCGAACGTCCCTATAAGTGTCCTGAGTGCAACAAATCATTCACGCTTAAACATCACTTGgTCAGTCACGAACGTGTACATACGAGAGAACGTCCGTTTGAGTGTCCGGAGTGTGGACAGAGATTCCCGCAGAAACGCCATTTGTCAACTCACATTAAATTTCATTCTGGTGAACGTCCTTTTTCCTGTCAGGTCTGTGGTGAATCATTCTCTCGTGAGGAACACTTGGTGATGCACTCGAGGTTCCATGGAGGACTGAGTCCCTACAACTGTCCAGATTGTGGTGCCGGTTTCCTGCGAAAGTTTGAACTGGTGAACCACGAGCGTCAGCACGGTCGCAACCCTGAATCGTGCCCGACATGTGGCAAGGAGTTCCTGCAGAAACGAACGTTATTAGTGCATGTGCGCACCTGTGGCATGACCTCCTCTTTTCCTACAACACAACAGTCCTCGCCACCGCGGTTCTCGGAGGAGACGTCCCCACGGTTCAATGACAACACACCACCTCGGTTCAGTGACGGCAGCTCTCCACCGCGGTTCACCAGTGAGAACGGTTCACCCAGGTTCTCGGAGAACGGAAACCAGTTCAGGTTCTCCGAGGGGCAGATGAGGTATCCCGACGGTACACCATCTTCTTCACCGATGCCAATGCAAGCTCCTAAGGATAAAGTTTGCAAGGAGTGTGGAGAAACATTTGCAAGTGTTGAAGGTCTAGCTCTCCATCTTCGATTGCACTTTGGTGACCATAGTTTCCTAGCGGACATCTGCAGTCTAGCTGCATCACTGAAACAAACTGCCGTCAACGTTGCTGCATCATTGAAGAAAACACACATATGCACAGACTGTGGCAGGGGGTTTACTCAGCGTCATGGGCTCTTCCAGCACCGGCAGAGGCACGCCAACGGCAGTTGCAAGGAGAAACCCTTCGCGTGTGAGAAGTGCGGGAAGAGTTTCGCTCAAAAGAACCATCTGACACTTCACGAAAGGCAACACATGGACCTACCTCGAAATGGAGTGATGAAGAGTCAGATACAGAAGGTGCCTCACCCAACGCCTGGCGAAAGTCATTTGGAGGACCAGCAAATGGAGTCGTCATCGGCCGGCGAGGACAACCCGAGCTCACAAGGTGAAGAAGGAACGATGGCCAATTCATTGATGCTTCGACAGAATCATCGGGATCACCAACGGGTGGAAATTATGAGCAGACATTCAGCAGACTCTTCGAGTAATGGTAATCAACGGACCACTCAAGAAGAGAATAAAGAAATTCAACGAGCGTTAGCCAACTCGTTGATGTTACCACAGAACCATACTGATCACAGAATGGAAATGTTAAATAGGCACGCTGAACCTACGAGTGAAAGTAGCCAACGGACTACTCAAAGCGAAAATCGGAAAGATATCGAACGATCAATGGCCAATTCTATTATGCTTCAACAAAACCACCAGGATCGGCAACGAGTTGATCTAATCAACAGGCATACATCAGAATCTCAGAGATCATTGAATGCTCCGGTTCCCCTTGTACGGATGCACAATAGGGTATCACAGAATAGCAGTATGCAGCAGGATAGTTCTGAGCGTCCCATATTACCTTCTCACCATCACCATTTGGGTGCTTCCACTCCCCCCTCGGACCAGACCATATCCTGCCTGCATCCTGTGGGCAACAAACAGTATTAG
Protein Sequence
LVLPKQRPHNCEECGKTFLMKHHLSTHMRVHTGERPHVCPECGKSFALKHCLSTHLLLHTAERPYKCPECNKSFTLKHHLVSHERVHTRERPFECPECGQRFPQKRHLSTHIKFHSGERPFSCQVCGESFSREEHLVMHSRFHGGLSPYNCPDCGAGFLRKFELVNHERQHGRNPESCPTCGKEFLQKRTLLVHVRTCGMTSSFPTTQQSSPPRFSEETSPRFNDNTPPRFSDGSSPPRFTSENGSPRFSENGNQFRFSEGQMRYPDGTPSSSPMPMQAPKDKVCKECGETFASVEGLALHLRLHFGDHSFLADICSLAASLKQTAVNVAASLKKTHICTDCGRGFTQRHGLFQHRQRHANGSCKEKPFACEKCGKSFAQKNHLTLHERQHMDLPRNGVMKSQIQKVPHPTPGESHLEDQQMESSSAGEDNPSSQGEEGTMANSLMLRQNHRDHQRVEIMSRHSADSSSNGNQRTTQEENKEIQRALANSLMLPQNHTDHRMEMLNRHAEPTSESSQRTTQSENRKDIERSMANSIMLQQNHQDRQRVDLINRHTSESQRSLNAPVPLVRMHNRVSQNSSMQQDSSERPILPSHHHHLGASTPPSDQTISCLHPVGNKQY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-