Hvit018878.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961825.1:818933-823738[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8e-05 0.0025 19.0 2.6 2 23 69 90 68 90 0.96 2 10 1.9e-07 2.7e-05 25.2 0.4 1 23 96 119 96 119 0.95 3 10 0.0011 0.15 13.4 1.7 1 23 125 148 125 148 0.97 4 10 0.00035 0.049 14.9 0.4 2 23 157 179 156 179 0.95 5 10 4.8e-05 0.0067 17.6 2.4 1 23 184 206 184 206 0.96 6 10 0.014 2 9.9 3.7 1 23 214 237 214 237 0.97 7 10 0.0002 0.027 15.7 0.0 1 23 242 264 242 264 0.96 8 10 1.3e-07 1.8e-05 25.8 1.1 1 23 270 292 270 292 0.98 9 10 0.00011 0.015 16.5 4.5 1 23 298 321 298 321 0.94 10 10 1.5e-05 0.0021 19.2 1.3 1 23 327 349 327 349 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGTGAAACATCTCTGACAAACCTGAGTACAGTACAGTTGGCTGATATATCTTTTACTGGAGGAGTTACAGATGGATCAAGCAATCAGTCGTTATCACAGACACATGGGATTAGGAAGAATGAGGTTGGACTTGAGTGCGGTAGTGATGTGATTGAAGATAGTAAAAAGAACACAGAGTTCAGCACAGAAGAATCAACAAGTTGTCAGGAGTGTGGTAAATACTTCAAAACACAATTTTGGTTGGAGAAGCATTTACTTCACCACAAATTTAGGAGAAGTTTTGAGTGTGATTTGTGTGGTAAAGCCTTCAAACGAAATTCAACTCTCAGAGCTCATAATCGGGAAATTCATTCTCCGACAAAAAAATTCTCATGTGATCAATGTAATTAtgcaacaaataacaaaacaaactatgaAAGTCACAACCGAGTAAAGCATGGAGATAtcaataaaaatggaattaaatgtGATTCCTGTGATAACAGGTTTGTCAATAAAGAAGATCTAGTACGCCATAAAATTAAAGTGCATGATGCTCCCAGATTTCAATGTGATCTGTGCGATAAGTCCTACACATCACAACGgtatttacatattcataaagTGATACACAGACCTGATTTCAAACCACAGCATCAGTGTTGCGAGTGTGGTAAACTGTTTCCGAACGGTGGGCGGTTGAGTTCACATAAACGAAGGAATCATTCGGGGCTCACGTACCCGTGCGGGGAATGTGGGAAGAATTTGTCCAGTCCAGTGGCGCTACGAGATCATGTCACACAACACTCCGGCGAGAAGACACACACATGTGGTGACTGTGGAAAGGTGTTTGCAACGTCCAAGTACCTGCGGATCCATGCGCGAACGCACTCTGGAGAAAAACCTTACTCCTGTACGGAATGTAGTAAGTCTTTCACACAACGCACCAGCCTCATAGTACATTGTAGAAGGTTCCATGCTGATGTAAAACCGTTCTCTTGCCAAGAGTGTCTAAAACAATTTGTAACCAGTACATTGCTCAAGCAACATATGAAAGGACACCAGACAACAGGAGCTACAGAAGAGAACCATCCCAGATCCTGA
- Protein Sequence
- MEGETSLTNLSTVQLADISFTGGVTDGSSNQSLSQTHGIRKNEVGLECGSDVIEDSKKNTEFSTEESTSCQECGKYFKTQFWLEKHLLHHKFRRSFECDLCGKAFKRNSTLRAHNREIHSPTKKFSCDQCNYATNNKTNYESHNRVKHGDINKNGIKCDSCDNRFVNKEDLVRHKIKVHDAPRFQCDLCDKSYTSQRYLHIHKVIHRPDFKPQHQCCECGKLFPNGGRLSSHKRRNHSGLTYPCGECGKNLSSPVALRDHVTQHSGEKTHTCGDCGKVFATSKYLRIHARTHSGEKPYSCTECSKSFTQRTSLIVHCRRFHADVKPFSCQECLKQFVTSTLLKQHMKGHQTTGATEENHPRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -