Hvit003878.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- znf711
- Assembly
- None
- Location
- KK961532.1:2881945-2888528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0017 0.24 12.7 1.5 1 21 188 208 188 209 0.95 2 10 3.7e-06 0.00051 21.2 0.2 3 23 215 235 213 235 0.96 3 10 0.004 0.56 11.6 0.4 1 17 242 258 242 258 0.91 4 10 0.00032 0.045 15.1 4.1 1 23 280 302 280 302 0.97 5 10 9.5e-07 0.00013 23.0 0.3 2 23 311 332 311 332 0.98 6 10 7e-06 0.00098 20.3 0.2 3 23 340 360 338 360 0.97 7 10 1.2e-05 0.0017 19.5 8.6 1 23 366 388 366 388 0.97 8 10 1.2e-06 0.00016 22.7 0.4 1 23 394 416 394 416 0.98 9 10 2.6e-06 0.00037 21.6 8.2 1 23 422 444 422 444 0.98 10 10 4.4e-05 0.0061 17.8 1.3 1 21 450 470 450 471 0.93
Sequence Information
- Coding Sequence
- atggcGACGATGACAGCGCTGTACGTGGACACAAACGGGGTCATTCCCGGGTCTCCCCGTCTCCATGACACCTCCTCTCGTAGTGATGGAGATTCCTCTTCCGAGCCACCCTCCTCACTGAGGGAGAACGACGAGAACCGCCCCGACGTCGTGAAGCTGTGTCGCCTCAAGGAGCGTCGACTCCACGAGTTCTACCGGGAGCAGATGCTGAGCAACGGAGCGCCTCTGGCACTGCCTCCCGAGGATACGACTGATCTGTCCTTCAAGGCACCACTCCTTCTGGACAAAATCCACCGCTACAGCGAGCAGCCCTTCAACTTTCCCAACAAGCTGCATCACATCTCTAGGATTCTGGGGGCGGACAACGGTGTGGGCTATCAAGCGGAAATCAATCCCCTCCACGGTCTCAAGACTTTGGCGAGCCTCTTGGAGGACAGCTCCAACTCTAACGGCTCCACCGGTATACAGAGACGGAAATCGCTCTCCTGTTCCGATCTCACAGAGGACGCCTCGAGGAACGACTCGAACAACAACGAAGGCTCCGTGGCCGCCGGGGAAGTCCACAGGTGTGCTGAGTGCGGCAGAACTTGTGAGAGCCTCCAACAGTTACTGCAGCACCAGCAGAGTCCGGAGTGCCTGGCATGTGGTGTCTGTGGCAAACAGTTCTCCCAGAGGAGTCAGTGGACCGCCCACCAGAAGCTACACGAGGAAGCCCGCCCCGAGCACGCCTGTACACACTGTACTAAGACCTTCGTCACAAGAGCATCACTCAAGTTTTCACGGTCACTGGATGTTTGCCCACAGGTACACATGCGGACCCATACGGGCGAGAAGCCGTTCCACTGTTTGGAGTGTGGGAAACAGTTCAGCCAACTACGCAACTACAAGTATCACCGGTCAGTCCACGAGGGTACCAGAGAATTTGCGGCGACGTGTCCAGAGTGCGGTAAATACTTCAACGACCGCGGATACCTCAGCTCTCATATGAAGATACACAGAAATCGAAAGGAGTACGGATGTGAGTATTGCGGGAAGAGTTTCAACCAGCGGGTGGCGTACAACATGCACGTCCGGATCCACACGGGGGAGAAGCCTCATGTCTGCCAACATTGCAACAAGTGTTTCTCCCGCAAGATGTTGCTGAAGCAGCACCTGCGCATCCACACGGGAGAGAAGCCCTTCACGTGCGTCGTCTGCCAGAAAGCTTTCGCTGACCGTTCCAACATGACTCTACACATGCGCCTGCACTCCGGTGTCAAACCGTACACTTGCAGTGTGTGCAACAAGTCCTTCACCAAGAAGCATCATCTGAAGACTCATATGAACTATCACACAGGAGTCAAGCCGTACGCGTGTTCCAAATGTGGACTGCGCTTCAGTCAGAGCTCCAACATGAGAACACACTTCAAGAAGTGCTCCTCAACCGCCTTCCCAGAGCTGCCCACACCTCCCTCCAGCGTCACTTCCCCTCTACCACTCAACATGGCTGTCACCCCTCCTGTCTCTGATGAATCGTCTTGTACTGGCAGTATCATCAAGGGTAACGCGTAG
- Protein Sequence
- MATMTALYVDTNGVIPGSPRLHDTSSRSDGDSSSEPPSSLRENDENRPDVVKLCRLKERRLHEFYREQMLSNGAPLALPPEDTTDLSFKAPLLLDKIHRYSEQPFNFPNKLHHISRILGADNGVGYQAEINPLHGLKTLASLLEDSSNSNGSTGIQRRKSLSCSDLTEDASRNDSNNNEGSVAAGEVHRCAECGRTCESLQQLLQHQQSPECLACGVCGKQFSQRSQWTAHQKLHEEARPEHACTHCTKTFVTRASLKFSRSLDVCPQVHMRTHTGEKPFHCLECGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCEYCGKSFNQRVAYNMHVRIHTGEKPHVCQHCNKCFSRKMLLKQHLRIHTGEKPFTCVVCQKAFADRSNMTLHMRLHSGVKPYTCSVCNKSFTKKHHLKTHMNYHTGVKPYACSKCGLRFSQSSNMRTHFKKCSSTAFPELPTPPSSVTSPLPLNMAVTPPVSDESSCTGSIIKGNA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -