Hvit003348.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961526.1:4161054-4183215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.6e-05 0.0078 17.4 0.5 1 23 242 264 242 264 0.94 2 12 0.0024 0.34 12.3 0.1 2 23 267 289 266 289 0.94 3 12 1.2e-05 0.0016 19.6 4.3 2 23 331 352 330 352 0.97 4 12 8e-05 0.011 17.0 0.3 1 23 358 380 358 380 0.97 5 12 0.0003 0.042 15.1 2.5 1 23 386 408 386 408 0.99 6 12 2.9e-06 0.0004 21.5 1.6 1 23 414 436 414 436 0.98 7 12 0.00034 0.048 15.0 1.4 1 23 442 464 442 464 0.98 8 12 5.5e-06 0.00077 20.6 1.5 1 23 472 494 472 494 0.98 9 12 0.0033 0.46 11.9 0.2 1 23 500 522 500 522 0.93 10 12 1.2e-05 0.0016 19.6 1.1 1 23 528 550 528 550 0.98 11 12 4.3e-05 0.006 17.8 0.4 1 23 556 578 556 578 0.98 12 12 0.0045 0.63 11.4 0.2 1 13 584 596 584 600 0.91
Sequence Information
- Coding Sequence
- ATGGATCCCTCagattttaatgaattatgtagaaTTTGCGGTTCTAAGACTAGTGTCCTTATGGGTTTACAGATATTCGAAAGAGAAGGAGATATGAGGcagatttacaaaaaaattactgatTGTTTGCCGATTCAGGTTCACACATATGATAAGTTACCGAAAATGGTTTGTGAAGAATGTGTTTACAAGTTGGATCTTCTATATGATTTTAGAGAAAAGAGTTTGAAGACAGAAAATGAATTAAAGAACATGCTTAAAGAACTGCAATATGTTCCGATGGTTGAACCAATGTCTATATCTGTTCCTATACAGGTGACAACACCCATCACTGATGCAGTGTTGGTCCAGTGTGTCAACCCACCTCTGGACTTACCTCCTTCTGAACCCTCCATTATAAAGTCCATCAACAAAAAAAGTTCCGAAAATCTGAAGTGTGAACCagatgtgtttataaaaattgaaagtgCCATGGGGGCTAGAGGGGGAGGGAGGATAGTGAATGCAAATCCGAACGTGATTAGTGAGTCAGAGTCAGAAGAGTCAGATAGTGGCTCAGATAGTGAGGAATCTTCATTGCCGGATGGAGACATGCAGGACGGCAATACCATGACTGAAGAAAATGTTCCTAATGGATTGCACCCTGACAATGGTGACAAGCTTGCCCAACTGACAGATAATGGAGAATTTATTATTCCTGAAGCTGATCATCAAACTTCCTGGTTCTTCTGTAATATTTGTGGTAAAGCATATGCCAAGCAAGAGGATTTTCAAGCTCATTATGAATTTCACTGGAGCAAGTGCATGACTTGTGATGTAGTCTTCTCAAGCGAAGAGGCGTTGGCAGCTCACAAGAAAGAGATGCACAATAAGAAAAACAAGTCAAACACAAAGGCAGTCACAAACAAAAaccaagaagatgaggaagaaaaAGATAAGGTGAAAAAGAAAAGTGAAGGCAAGAAAGACTCTAAACCAGGTGAAATGAAATCATGTACTGAATGTGGGAAAGAGTGTCGCACTAACTATAAACTTACTGAACACATGAGGAAACACACAGGTGAAAAGCCATTCCAATGTTCTTCATGTGATAAGGCCTTCCGATCAAAAATAGGTCTGGCTCAACATGAAGCGAAACACACCGGGCATTATGATTACACTTGTAACTCTTGTGGAAAGGGATTCCAATGTAAGTCCTATTTGATTGTACATCAACGGGTCCACAGTGATTTGAAGCCTTACCCTTGCACCACTTGTGGGCGTAACTTCAAAACTAAACAGAGCCTTCTTGATCATCAAAACCGACATTTAGGGTTGAAACCGTATATTTGTGAAACTTGTGGTCGGGGATTTATCACGAAAGGTCTATGCAAATCACATCAGAGAGTGCACTCAGGTACAGATAATCGTCAGTATCCGTGCACAGTCTGTCATAAATTGTTTGTCAGTAAATCATATTTAGTTACTCACCTCAGGATTCATACTGGAGAAAAACCTTTTATGTGTGAGGTATGTGGGAAGGGCTTTTTGACCAGAGTGGACTTGAGGATCCACTCGACTCTGCACACTGGTGAGAAAAGCTTTGTGTGTGAAGTTTGTGGTAAAGCGTTTGCCCGGAGAGATGCCCTACGCTGTCATAGACGCAGTCACACTGGTGAACGACCATACCGCTGTGACATTTGTGGCCAGAGCTTCACACAGTTTTCTCCAATGGCGATACACAAGCGACTACACACAGGCGAGCGACCCTACACTTGTGATATGTGTGGCAAGAGCTTCGTGTCCCgtACCGTAATGACAACCAAGAGCCTAGAAGTGACTGAGCAGAATCTGACACCTGTAATAGTCCAGCTGTCACAGATCCATACCACATCCGTCCTCCACTAG
- Protein Sequence
- MDPSDFNELCRICGSKTSVLMGLQIFEREGDMRQIYKKITDCLPIQVHTYDKLPKMVCEECVYKLDLLYDFREKSLKTENELKNMLKELQYVPMVEPMSISVPIQVTTPITDAVLVQCVNPPLDLPPSEPSIIKSINKKSSENLKCEPDVFIKIESAMGARGGGRIVNANPNVISESESEESDSGSDSEESSLPDGDMQDGNTMTEENVPNGLHPDNGDKLAQLTDNGEFIIPEADHQTSWFFCNICGKAYAKQEDFQAHYEFHWSKCMTCDVVFSSEEALAAHKKEMHNKKNKSNTKAVTNKNQEDEEEKDKVKKKSEGKKDSKPGEMKSCTECGKECRTNYKLTEHMRKHTGEKPFQCSSCDKAFRSKIGLAQHEAKHTGHYDYTCNSCGKGFQCKSYLIVHQRVHSDLKPYPCTTCGRNFKTKQSLLDHQNRHLGLKPYICETCGRGFITKGLCKSHQRVHSGTDNRQYPCTVCHKLFVSKSYLVTHLRIHTGEKPFMCEVCGKGFLTRVDLRIHSTLHTGEKSFVCEVCGKAFARRDALRCHRRSHTGERPYRCDICGQSFTQFSPMAIHKRLHTGERPYTCDMCGKSFVSRTVMTTKSLEVTEQNLTPVIVQLSQIHTTSVLH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -