Hvit004616.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961539.1:3784906-3808261[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.8e-05 0.0038 18.4 1.5 1 23 6 28 6 28 0.99 2 14 1.2 1.7e+02 3.8 0.6 1 23 40 62 40 62 0.80 3 14 6.4e-05 0.0089 17.3 2.8 1 23 78 101 78 101 0.96 4 14 0.0025 0.35 12.2 0.7 1 23 110 132 110 132 0.98 5 14 6.4e-05 0.0089 17.3 2.8 1 23 177 200 177 200 0.96 6 14 0.0025 0.35 12.2 0.7 1 23 209 231 209 231 0.98 7 14 0.00033 0.046 15.0 0.7 1 23 287 310 287 310 0.95 8 14 3e-05 0.0042 18.3 2.2 1 23 333 356 333 356 0.97 9 14 0.0002 0.028 15.7 0.2 1 23 368 390 368 390 0.92 10 14 1e-07 1.4e-05 26.1 1.1 1 23 396 418 396 418 0.98 11 14 0.00012 0.017 16.4 1.0 2 23 425 446 424 446 0.96 12 14 0.0025 0.35 12.2 0.6 1 23 452 474 452 474 0.96 13 14 1.3e-06 0.00019 22.5 1.2 1 23 480 502 480 502 0.98 14 14 6.1e-05 0.0085 17.3 0.8 1 23 508 531 508 531 0.96
Sequence Information
- Coding Sequence
- ATGTCTGTGAAGCCCTACCAGTGTCACATCTGTGGCGCTTACCTGTCTCGACTGTCACGCCTTCGTATACATCTGCGCACTCACTCCGTTAAGTCTTCTAAGGCCTCTATGAAGGCATACAAATGTTCTGTCTGCACTCAGTTGTTCCCAAACACTAAGGATGGGTTTAACCATGCCGAGAGCCATGCAGAAACCAATGTTAACCTGAAAGAGGAGGTAGTGACTTTGgtGTTTCGTTGTGAATACTGCGATGCTTGCTTTCAACAGGCATCAGATCTGCGAATGCATCGCAAGGAGAAGCATGCCAACCCAGAGGCTCATAATGCTTACACATGTAGTGTGTGTGGGGCACAGTTCTCCACATTTGCACGAGTCACCACACATAAGCTAACTCATGGTATTAACACTGAGTCACTCATTGTGCCTGACGAAGATGTGTTGTTCCCAAACACTAAGGATGGGTTTAACCATGCCGAGAGCCATGCAGAAACCAATGTTAACCTGAAAGAGGAGGTAGTGACTTTGgtGTTTCGTTGTGAATACTGCGATGCTTGCTTTCAACAGGCATCAGATCTGCGAATGCATCGCAAGGAGAAGCATGCCAACCCAGAGGCTCATAATGCTTACACATGTAGTGTGTGTGGGGCACAGTTCTCCACATTTGCACGAGTCACCACACATAAGCTAACTCATGGTATTAACACTGAGTCACTCATTGTGCCTGACGAAGTTAAAAAAGGGGAAGAGACATTTGTGATTCCACAATTCTTCCTGTGTCATGAGTGTGACAAGCGATGTTTGCACTACACTTACATGAACTTGCACCGTCGCTTCCATCATGCGGCAGGCAAGCCTATCTACCCTTGCAACATCTGTGGAGAGAAGTTTGCCACATCCTGGTCACTAACATTCCACAAAAAGAAACAGCATCAGATTTGTAACGACAATGCGTCTGAGGCAGAAATAGAGGACAACCGACGTAGTGTCAACACACTGTACCACTGTCCAGAGTGTGACAAGCCATACGTAACAGAAACCAGTCTGGAGATGCACATCAAGAAGTGTCATCAAGCTGGTCAAAGGGATGACTTGACCTCCAACTTCATCTGTGAGACATGTGGCAAGACATTTCAGTTCAAGACAGCACTGGAAGCTCATGCAGACGGACACAGAGGACTGAAGAGGTTTGAATGTGAGGTGTGTGGTAAGAGGTTCACTCACCGTGCAGGGCTCATCAGGCACATGAAGCTCCACTCTGAGAACGACCCACTGGTCTGTGAGTTCTGCGGCAAAAAGTTCAGAGATCGGACAGAACGAGAGAACCACCGTCGCGCACATACAGGGGAGAGACCGTTCATGTGTGATGTTTGTGGACGTACGTTCCACACCCGTGCGGTTTGGCTCGACCACTCCAGAATACACCAGGACATCCGGCCTTACCAGTGTGATATCTGCACCCAGTCATTCCGACGGTCCTACGCACTCAAGAGCCACTACCTGATACACACGGGAGAAAAACCTTATGCCTGTGAGGTCTGTGGCAAGACATTCCGACTCAGACAGACATTGTTTGCACACAACAAGAAGGAACACCAGACTCCTGTGCAGACTATACTGCCAGACGACATTCTGAAAGAAGAGAACAGTCAGTTTGCTGATGACAGTGGACTCTCGGAAATCGGTTCAGATAACTTGGTGGCCAAGACCTTTATGAACAGATCGGGAGAAATAGTgataaaagaaaaaatgaaaGTTCCGGCTAGTTCATTGTTGAATTCTGCCAATATTGTTAAGCAAGGCGATCATTGGAAAGTGGACTCAAAGTCTGTTCTAGTGAGTAAATCATCTCCTAGAATGGTGTTGAAAGACAGTACTGTAGGTGATCAATCCCTGAGCCAGCAAGGCTATAGTTTATTACTCAAATCTGATCATATTAGCCTAGATGGGACTCATTAA
- Protein Sequence
- MSVKPYQCHICGAYLSRLSRLRIHLRTHSVKSSKASMKAYKCSVCTQLFPNTKDGFNHAESHAETNVNLKEEVVTLVFRCEYCDACFQQASDLRMHRKEKHANPEAHNAYTCSVCGAQFSTFARVTTHKLTHGINTESLIVPDEDVLFPNTKDGFNHAESHAETNVNLKEEVVTLVFRCEYCDACFQQASDLRMHRKEKHANPEAHNAYTCSVCGAQFSTFARVTTHKLTHGINTESLIVPDEVKKGEETFVIPQFFLCHECDKRCLHYTYMNLHRRFHHAAGKPIYPCNICGEKFATSWSLTFHKKKQHQICNDNASEAEIEDNRRSVNTLYHCPECDKPYVTETSLEMHIKKCHQAGQRDDLTSNFICETCGKTFQFKTALEAHADGHRGLKRFECEVCGKRFTHRAGLIRHMKLHSENDPLVCEFCGKKFRDRTERENHRRAHTGERPFMCDVCGRTFHTRAVWLDHSRIHQDIRPYQCDICTQSFRRSYALKSHYLIHTGEKPYACEVCGKTFRLRQTLFAHNKKEHQTPVQTILPDDILKEENSQFADDSGLSEIGSDNLVAKTFMNRSGEIVIKEKMKVPASSLLNSANIVKQGDHWKVDSKSVLVSKSSPRMVLKDSTVGDQSLSQQGYSLLLKSDHISLDGTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -