Basic Information

Insect: Homalodisca vitripennis
Gene Symbol: -
Assembly: None
Location: KK961604.1:933684-936294[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.8e-05 0.0081 17.4 0.3 2 23 29 50 28 50 0.96

2 14 2.1e-05 0.0029 18.8 0.4 1 23 61 84 61 84 0.96

3 14 1.9e-06 0.00026 22.1 0.6 1 23 90 113 90 113 0.97

4 14 0.0037 0.51 11.7 0.1 1 23 126 149 126 149 0.93

5 14 0.00025 0.035 15.4 2.2 1 23 154 176 154 176 0.98

6 14 0.00025 0.035 15.4 0.8 1 20 183 202 183 205 0.93

7 14 0.0001 0.015 16.6 0.9 1 23 211 233 211 233 0.99

8 14 2.1e-06 0.00029 21.9 0.9 1 23 239 261 239 261 0.98

9 14 3.5e-06 0.00049 21.2 0.4 1 20 267 286 267 289 0.94

10 14 0.27 38 5.8 1.6 1 23 295 318 295 318 0.91

11 14 3.4e-06 0.00047 21.3 2.0 1 23 324 346 324 346 0.95

12 14 9.2e-07 0.00013 23.1 0.2 1 23 351 373 351 373 0.98

13 14 3.6e-06 0.00049 21.2 3.5 1 23 379 401 379 401 0.96

14 14 3.1e-05 0.0043 18.3 2.1 3 23 409 430 408 430 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.8e-05	0.0081	17.4	0.3	2	23	29	50	28	50	0.96
2	14	2.1e-05	0.0029	18.8	0.4	1	23	61	84	61	84	0.96
3	14	1.9e-06	0.00026	22.1	0.6	1	23	90	113	90	113	0.97
4	14	0.0037	0.51	11.7	0.1	1	23	126	149	126	149	0.93
5	14	0.00025	0.035	15.4	2.2	1	23	154	176	154	176	0.98
6	14	0.00025	0.035	15.4	0.8	1	20	183	202	183	205	0.93
7	14	0.0001	0.015	16.6	0.9	1	23	211	233	211	233	0.99
8	14	2.1e-06	0.00029	21.9	0.9	1	23	239	261	239	261	0.98
9	14	3.5e-06	0.00049	21.2	0.4	1	20	267	286	267	289	0.94
10	14	0.27	38	5.8	1.6	1	23	295	318	295	318	0.91
11	14	3.4e-06	0.00047	21.3	2.0	1	23	324	346	324	346	0.95
12	14	9.2e-07	0.00013	23.1	0.2	1	23	351	373	351	373	0.98
13	14	3.6e-06	0.00049	21.2	3.5	1	23	379	401	379	401	0.96
14	14	3.1e-05	0.0043	18.3	2.1	3	23	409	430	408	430	0.97

Sequence Information

Coding Sequence: ATGCTGTTGGGACAGTTAGAGGCGGCGTCAGTGACAGTGGAGTGTGATCCCCGCTCTCTGCTGCAGGCCCCTTCCTCCACCACTACCTGCCTCGAATGTGGCAAGATCTTTGACAACCATGTGGAGTTGGTGGAGCACATGCAGTGGCATGCTGCCATCCAGAGTCCCCACACTCATTCCTTTGTCTGCTCTGTCTGCTTCCGAGGATTTTCAAGTTCTGACCAGCTGGCCAAGCATGTTAAATGGACCCATGAAGGAGGCAAGAAGTATTCGTGCCCGGTTTGTCCTAAACGGTTCACCACCAGCTATTATGTTAAGAAACACGTAGATACAGTACACTCTCATAAGCAATCCAAGAAAGGGATGATAAGCATGTATTTTTGTGCAGAATGTCCTCTTAAGTTTGCTTCAGAAGCATTGTTGAAATCACACGAAGATAAGGTTCATAAAAAGGCTCTATACCAGTGTGATAAGTGTTTGAAGTACTTTGTGAAGTACCCCAACTTACAGCGGCACAAATTATCACACACCGGTGAAAGTCAAGGCTTTACTTGTGCCTACTGCAACCAAGTATTCAGTTCTCGAAAACTCCTTCACGCTCACTGGCCTGTTCATTctgataaaagtatatataaatgtgaaatctGTGACAGTACATTTACAGCAGTAAACTCCTTAAAGAGGCATAAAATGATGCATTCTGAAGAGAAACTGTTTCGGTGTGAGATATGTCAGAAATCCTTTAGCTTACTGAGTACACTGAAAACTCATCTTTTGATTCACACTGGAGCTCGACGATTTCAATGCAAACTTTGTGGTAAAAGTTTTAACCGTCAGGATGTTCTCAATGCTCATCAATGGGTCCACACAGGGGAAAAGAGGTTTCAATGTGACATTTGCTTGGAGAAGTTTAGATGGAGACATGCTGTTAAGTCTCACAAGTTGATTTACCATACCAAGGAAAAGCCTCATATCTGTGAAGTATGTGGAAAGCGGTTTAGCCATCCGGACTCTTTTAAGAAACATGCCGAAGTTCATTCTGAAAAGATGTTTTACTGTCAAGTTTGTCTGAAAGCATTTTCCCGTCCAAGCACTCTCAAAGCTCACATCCTAATACACACAGATCTAAAACCATTCTTCTGTGATGTGTGCAATAAAGCTTTTCGTAGCAAGAGTCATCTTCGAAATCACTTCTTGGTTCACACGAAAGAAAAGCCTTGGCTGTGCAAGTTTTGTAACAAGACCTATAAGGACCGCATTCAGCTTCGAAGACACAAACGTGTTGTTCACTGCAAAGCCTTCTACAAAAAAGTGCTACCTGAATTACCAGAAGACTCGAAGTCAATTATGACTGCAAATGAAAAGGTAACATTTGAAAATCAACAGTTGCCCTTGGAGAGTACTCTTCATTCAGAAGATGGTGTTTCTCAGCCATCTGAACATTTCATTTTGTTGAAAGATTGTCATCCAAAGGAAGGCgaaaatgttaaagatatttaG
Protein Sequence: MLLGQLEAASVTVECDPRSLLQAPSSTTTCLECGKIFDNHVELVEHMQWHAAIQSPHTHSFVCSVCFRGFSSSDQLAKHVKWTHEGGKKYSCPVCPKRFTTSYYVKKHVDTVHSHKQSKKGMISMYFCAECPLKFASEALLKSHEDKVHKKALYQCDKCLKYFVKYPNLQRHKLSHTGESQGFTCAYCNQVFSSRKLLHAHWPVHSDKSIYKCEICDSTFTAVNSLKRHKMMHSEEKLFRCEICQKSFSLLSTLKTHLLIHTGARRFQCKLCGKSFNRQDVLNAHQWVHTGEKRFQCDICLEKFRWRHAVKSHKLIYHTKEKPHICEVCGKRFSHPDSFKKHAEVHSEKMFYCQVCLKAFSRPSTLKAHILIHTDLKPFFCDVCNKAFRSKSHLRNHFLVHTKEKPWLCKFCNKTYKDRIQLRRHKRVVHCKAFYKKVLPELPEDSKSIMTANEKVTFENQQLPLESTLHSEDGVSQPSEHFILLKDCHPKEGENVKDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -