Hvit016324.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- ECU06_1150
- Assembly
- None
- Location
- KK961735.1:812078-817372[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.55 76 4.9 0.1 1 23 44 66 44 66 0.95 2 24 0.013 1.8 10.0 1.9 1 23 140 162 140 162 0.97 3 24 0.019 2.7 9.5 0.5 2 23 169 190 168 191 0.91 4 24 0.00021 0.029 15.7 2.5 1 23 195 218 195 218 0.98 5 24 0.00015 0.021 16.1 2.0 2 23 223 244 222 244 0.96 6 24 0.0049 0.69 11.3 1.7 1 23 257 280 257 280 0.93 7 24 0.094 13 7.3 0.9 1 23 286 309 286 309 0.94 8 24 3.8e-05 0.0053 18.0 1.5 1 23 315 337 315 337 0.96 9 24 0.081 11 7.5 3.5 2 23 343 364 343 364 0.97 10 24 0.0031 0.44 11.9 0.1 1 23 394 416 394 416 0.97 11 24 0.038 5.2 8.5 0.1 2 23 421 443 420 443 0.96 12 24 0.046 6.4 8.3 0.8 1 19 459 477 459 481 0.89 13 24 0.6 83 4.8 0.8 1 23 486 508 486 508 0.92 14 24 0.00033 0.046 15.0 2.0 2 23 538 559 537 559 0.96 15 24 0.0028 0.39 12.1 2.7 1 22 635 656 635 656 0.95 16 24 0.001 0.14 13.5 2.5 1 23 743 766 743 766 0.97 17 24 0.00012 0.016 16.4 1.0 1 23 786 809 786 809 0.96 18 24 0.00038 0.054 14.8 0.9 1 23 843 865 843 865 0.99 19 24 0.00019 0.026 15.8 4.4 1 21 871 891 871 894 0.95 20 24 1.7e-05 0.0023 19.1 1.7 1 23 900 922 900 922 0.98 21 24 2.6e-06 0.00037 21.6 1.8 1 23 928 950 928 950 0.98 22 24 2.5e-05 0.0035 18.5 6.7 1 23 956 978 956 978 0.97 23 24 8.4e-05 0.012 16.9 1.1 1 23 984 1006 984 1006 0.96 24 24 4e-05 0.0056 17.9 5.2 1 23 1012 1034 1012 1035 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAGGACAATGTCGATGAcaacaattacaatgaaataagtaGAAAATCGGCAAAATACTGTGAGTTAGAAGATGATGATGAGTTAATGAGTGACTATGACAGTGATGAGGAGTACAGCACGCTGTATTCTTGCAGCATTTGTAACGCATCCGGCATGGTGATAGGGGACTTCCTGAAACACACCAGAGAACACACAAGAGATGAAAGACAGCAGGTATTAGAGAGGAAGACCGAAGACAGGCTAGCACAGAAAATGGCAGCCAGAGAGGCTGCCGTCGCTTACGGATTTAAGCGTCAGTCGAGTTTGAAATCTTCTGTAACGTTGTATCTCTGCGTTGTTTGTGGTCAGGGAAATCTGCTGTTGAGGAACCTCAAGGAGCACAGTTCGCTACATCCTGAGTGTGTTCGTAGCCATTACTGTAACCTTTGTCAGCAGCAGTTTCAGAACGAAAAAGAACTGAGCGATCACCTTGAGATGCATTTAGATAACAACGACTTGATTTGTCAGTATTGCAATAGGAAGTTCAGCATCATTGAGGATTTGGAATCGCACGAGAGCGGCCATCATCAGGCCGAGTACAAGTGCACCTATTGCCGTGAAAGTTTCAAATCGAAAGAGTTTGTTCTGTCACACTTGAGGAAAATACACTCGACACAGAGTGTTTGTCACATCTGTGATAAGGATTTCAAAAccgaaaatttactttataagcACTTTATAACCCATGCAAGTCtgtgtatagttaaaaaattggTCCAGTACTTCACTTGTGATTTTTGCGCAAAAAAATACGATAGTAAGATTTCTTTACAACGCCATACCTTGTTTCTGCACAATGACAGAATGCCTTACATCTGTGAACACTGTGGGTTCACAGCTTACCACGAAGAGCCACTGAGAGAACATCTGGTCAAGGAGCACGTCCACAATAGCATGTATTTGTGCTGCAAGTGTGGCCTCGAGTTTAGGGACAAGTCAGAACTTGACGCGCACATGACCACCCATTCGGACAGGACAAACCGGTGCAATATGTGCAGTTTGAAGTTTGAACATTTCTTAGATCTTAAGTACCATATGACCTCCCATTCTGATGTTGGTCCAGTGACTGATGCAAAAGAATCGGATGTATATGAAAACAGTGAAGTCTTAGAAACAtctgaaaaagattttatatttatttgcaatcgCTGCGATGAAACGTTTGAGGAGGAAGAGATGTACGCCACGCACATGAACGGACATGTACCGACTGTGTCTTGTGATCtatgtgaaaaattatttgaaagtgatgtattattgaatattcatCTAAATAGAGTCCATACCAACAAATTTGGCAAACCCGACTTGAAAAAAGGAGCATTACCTTTCAAATGCGATATATGTAGTGCTTCATTTAGGCTTGAGTTCGAATTGGAAGACCACTGCATTATTCACAGAGACGTTTTGTACCAGTGCCATGTATGTTTTGAAGAGTTTTTGCTCGACAAAGAGCTTCAAGATCACTTAGGAACTCATGATGAAGAGAGCAATGAAAATTTAGAAAGTACTATGAAAGAGAGCCAATCAATGATGATCAAACATTTCTCCGTAGATCATAAGATACAGTGTGGCCACTGCCGTGCGTGTTTCACCAGCAAACAACAGCTGGCCGTCCATATGGCACTCCACAATAGCAAAGAGACATCCAAGACTGATCACTTTGTTGGCCAAAAACTTGAAGGTGACCAAAAAAGGAAGAACACCTGTGGCACGAATAAAGACACAAAAGATTCACAATTTGTATCTAGTGAGGATTTTAGGGCAACAAAACTTAAATCACGCTGCAGAAAGCAACTCGGAAGAAAGCAGGTTTGTAGCACTACTTTGCCCAGAAAGAATCGAAGCAAAACTCGATTTCATTGTGATAAATGCCCATTATTATTTTCTAGACGAGTTGACTTGACAAAACATCTTTGTAcggaaacattaaatttagtaatcaataaaaatggAAGCACCTCAAACAAATTTTCACATACGAATAAATTAGACAAGGTATTACATGGAGTGTCAGAAGATTTTTTGGATGAGAAAAGCAGATCAGACATTGAAGATGATATGAATTTAATGAATTACAGTGACGATTCTGTAAAGAGTGAAGATATCAGTCGTCATCTCGATGTTAAACCTCAGTTTTCTGTCCAACCTATGTCTGAATTAATTTCTTCAGGTCAACTATATTCTTGCTCAATGTGTGATTTTGCATGTACAAAAAAGACAGAATTAACTGCTCATCGACTTAAAGAACATGgaactgaaattaaaaaacttcaagGAACtcctttgaaaaatgtttcagtCGGTTTGTTTCCATGTACTCTATGCAGTAATTCATACTCTAGGAATTCAGACTTAATGAGGCATGTTCTCAAAAAGCACGGTGGTGAAAAGTTGTCTAGAAGATGTGTTGATTCTGTAGATGACATGGATGTAGAACTCATCAATAAAGCAAAAGAAGTTATAAATGGCATCACTGTATACAGGTGTGAGGTTTGCAACAAGAGTATGATTACTAAGAGAGGTTACGTTCGTCACGTGAGAACTCACACCGGCGAACGTCCGTTCACATGTCACGTTTGTGGTAAACAGTACCGCTCCAGCACTGACCTCTCACGCCATCTCAAGTGCGTTCATGACGGAGTGAAAAACTACCCGTGCGATGTATGTGGGAGGTGTTTTGCCAACAAGGGCACACGAAACGATCACCGGCGTACACACACCGGGGAGAAACCGTTCGTCTGTCACATTTGTGGTAAATCCTTTCCCACACAGAATTCTATCTATGTTCACCGTAGAACTCACACGGACGTTTTTCCCCACAGTTGTACCACGTGTAACAAAAAGTTCAGGAGAAGACAACAGCTGATACATCACATCAGAATTCACACCGGGGAGAAACCGCACGCCTGCGATATTTGTGGCAAATACTTTCGAGTAAAAGATGAAGTGTCAAGGCACAGACTGACTCATTCCAATGAAAAACCCCACGTTTGCCCTGTTTGTGGTATTTGTTTTGCACAAAAGCGCTACCTTTCAAACCACACAAAAACACACCATTCAAGATTGATG
- Protein Sequence
- MEEDNVDDNNYNEISRKSAKYCELEDDDELMSDYDSDEEYSTLYSCSICNASGMVIGDFLKHTREHTRDERQQVLERKTEDRLAQKMAAREAAVAYGFKRQSSLKSSVTLYLCVVCGQGNLLLRNLKEHSSLHPECVRSHYCNLCQQQFQNEKELSDHLEMHLDNNDLICQYCNRKFSIIEDLESHESGHHQAEYKCTYCRESFKSKEFVLSHLRKIHSTQSVCHICDKDFKTENLLYKHFITHASLCIVKKLVQYFTCDFCAKKYDSKISLQRHTLFLHNDRMPYICEHCGFTAYHEEPLREHLVKEHVHNSMYLCCKCGLEFRDKSELDAHMTTHSDRTNRCNMCSLKFEHFLDLKYHMTSHSDVGPVTDAKESDVYENSEVLETSEKDFIFICNRCDETFEEEEMYATHMNGHVPTVSCDLCEKLFESDVLLNIHLNRVHTNKFGKPDLKKGALPFKCDICSASFRLEFELEDHCIIHRDVLYQCHVCFEEFLLDKELQDHLGTHDEESNENLESTMKESQSMMIKHFSVDHKIQCGHCRACFTSKQQLAVHMALHNSKETSKTDHFVGQKLEGDQKRKNTCGTNKDTKDSQFVSSEDFRATKLKSRCRKQLGRKQVCSTTLPRKNRSKTRFHCDKCPLLFSRRVDLTKHLCTETLNLVINKNGSTSNKFSHTNKLDKVLHGVSEDFLDEKSRSDIEDDMNLMNYSDDSVKSEDISRHLDVKPQFSVQPMSELISSGQLYSCSMCDFACTKKTELTAHRLKEHGTEIKKLQGTPLKNVSVGLFPCTLCSNSYSRNSDLMRHVLKKHGGEKLSRRCVDSVDDMDVELINKAKEVINGITVYRCEVCNKSMITKRGYVRHVRTHTGERPFTCHVCGKQYRSSTDLSRHLKCVHDGVKNYPCDVCGRCFANKGTRNDHRRTHTGEKPFVCHICGKSFPTQNSIYVHRRTHTDVFPHSCTTCNKKFRRRQQLIHHIRIHTGEKPHACDICGKYFRVKDEVSRHRLTHSNEKPHVCPVCGICFAQKRYLSNHTKTHHSRLM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -