Hvit003741.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961546.1:574689-582618[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.17 23 6.5 0.0 2 23 195 216 194 216 0.89 2 18 0.059 8.2 7.9 0.3 1 20 222 241 222 245 0.89 3 18 0.0048 0.68 11.3 0.7 1 20 256 275 256 277 0.94 4 18 0.067 9.4 7.8 1.5 2 23 284 305 284 305 0.95 5 18 0.0028 0.38 12.1 0.5 2 23 312 334 312 334 0.94 6 18 7e-08 9.7e-06 26.6 2.2 1 23 340 362 340 362 0.98 7 18 3.5e-06 0.00048 21.2 2.8 1 21 371 391 371 394 0.89 8 18 0.01 1.4 10.4 0.1 1 23 404 427 404 427 0.96 9 18 2.9e-05 0.004 18.4 2.5 1 23 448 470 448 470 0.94 10 18 1.7e-06 0.00024 22.2 0.5 1 23 476 498 476 498 0.98 11 18 0.0005 0.07 14.5 2.0 1 23 516 538 516 538 0.97 12 18 0.016 2.2 9.7 1.9 1 23 544 566 544 566 0.96 13 18 4.4e-06 0.00062 20.9 0.4 1 23 580 602 580 602 0.99 14 18 8.8e-07 0.00012 23.1 0.5 1 23 608 630 608 630 0.98 15 18 0.00066 0.092 14.1 0.2 1 23 636 658 636 658 0.98 16 18 0.00011 0.015 16.6 3.2 1 23 664 686 664 686 0.98 17 18 5.3e-06 0.00074 20.7 0.9 1 23 692 714 692 714 0.99 18 18 2.8e-05 0.0039 18.4 0.7 3 23 722 743 721 743 0.96
Sequence Information
- Coding Sequence
- ATGGCCGAGACCTCACTCCAGGCTGAGAATAGGCTGCGGGAAATGATGACTGAGAAGCAGTTCAGCTCCCAACCTCTTACAGGATCAGATCTGCTGAGTCCAGTCTACGTGGGATCTGAGGGTGATGACTCTCAAGACAGTTCTAGTATATCCAAGTTAAATAACATGAATGAGGCAAAGTCTTTGTTTTGCTGCCCTTTGTGTTCCTGTGGGAAAATGATCACAAAAAGTGGCATCTATAGAGCCAATCATGGTGTGTGTCAAGAGTTAAAAACTGACACTGAAGAAAAACCTAAAATCACTACTGTCGAAGAAAGCTCTGAAACAACAGCCATTCTACCTGAggtaaaattttcaaactctatGAAAGAGCCGAGCAAGTTAAACAATGAACAACAGCAATTATGGAATGGACAAGAATACTCTTTAAAAATACCTGAATTAGATATGGATACTTTGTATCATGATCCTGACAGTATTGTGGGGATGGAGTTAGATACTATTCCAGAAGATGAAGCCTGGGAAGGATTACGAagtaataaagaaactaaaattgtagTAAAAGGAGAAAAAGAGTCCTTAATATGTAGAATTTGTGGGGTGGAATTTTCAGAACTGACAGCTCTGTTGGATCACTCAGAAGATCACTCGGACATAGACTGTTTCCCTTGTACAATGTGTGATCGGTGGTTTAGTAACAAATCAGTGCTAGACACACATTTTGTGGAAGAACACTTTGGCCATAAAATAGAGGAAGCGGAGGTACATCAGTGTGAGTCCTGTGGGCTCTCATTCAAATCAGCTGTGAGACTGGAGAGTCATGTCTGTGGCTCTTCTGCTGCTACAAACAGATGTCTTACCTGCAACAAGGCATTCCGCTCCGAGGCTCGGTTGGAGTTTCATCAGAGGTTTCATCGTGGAGCTAAACCAGGATATTGTGAAGTATGCCAAAAAACATTCCCAGATGAGCTCAAGCTGTACAAGCACACAATGTATTTACATTCCCAGAACAAAGGACATGTCTGCGAGGAGTGTGGCAAAGTCTTTAGATCAAACAGTTCACTTAGGTACCATCAGAGATCCCACCAAGGTGAGGACATAATGAAGCCTTACCCATGTGAGTACTGCGGAAAGTGTTTCATCAGAAAAAGTATGCTGAGGAATCATTTTGTGAACACTCACAAGGATAAAACTCAGGAAGGTAGCTGTTTTACTTGTAAACTCTGTTTTGAAGCATTCCCGAGCACTGATCAAGCCGTGAACCATATGGATATCATGCATATTCCCGAATGCAGTGGGGAGACAACATATAGTTTTGAAATGCACACAGTGAAGAGACTTTATCTGTGTGAATATTGTGAGAGATGCTTCACAGATCCTGTTAATCTCAATGCTCATAGGGAACATCATCCTCCAGAGTATCCCTATCAGTGTAAAATCTGCAATGAAGCTTTTTCATCTTCCTCTCTTCTTGAGGAACATAAAAAACTTCACATATCAGCTGGTGTGAGGGATTACATGAGTGAATTCACTGTTCCAACCGTGTACATGTGCGAGTATTGTGAACGCTGCTTCATGAACAATGTGAAATTGTCTGAACATCTGACTGTGCATTTTGGTGAAGAGCCATACCATTGTCGATTttgtgatttgaaatttaaaacccAGGCTGAGGTATCTGAACACCGGCTGGCTCATGATCAGACTCTTTCTCCAGTCGAAGATTCATACAGACCTTATGAATGTCATTTTTGTCCAAAATCTTTTGCGATTGAAGATGCTTTAGTGAAACATATACGAATGCATACAGGAGAGAAACCATTTATCTGTGATCAATGTGGGAAAGGGTTCTCACAGAGTTCCGGTTTGTACACCCACCAGAAAGTGCATTCGGATGAGAGGCCATACTCCTGTCCAGTTTGTCCAAGAACCTTTAAGATTAAAGGAGATAGAGATGTACATGTCAGAAAACACTCGGGGGATCGTCCTTACAAGTGTGATTATTGTGGAAAGGCCTTCATGACCCAACATGTTTACAGCCAACATCGGAAAATCCATACAGGAGAACGGCCCTACAAGTGTGATGTCTGTGGTATTGCCTTTCGTAGATCCCACGTTTTGACAGTACACAAACGTATCCACACTGGTGAGAAACCCAACATTTGTGATATCTGTGGCAAGAGATACCGTCAGAAGGGGGATATGTTAAAGCATCGCAGACTACAACACGGTATTGTTAAAGTTAGAATACAAAaggttgaattttaa
- Protein Sequence
- MAETSLQAENRLREMMTEKQFSSQPLTGSDLLSPVYVGSEGDDSQDSSSISKLNNMNEAKSLFCCPLCSCGKMITKSGIYRANHGVCQELKTDTEEKPKITTVEESSETTAILPEVKFSNSMKEPSKLNNEQQQLWNGQEYSLKIPELDMDTLYHDPDSIVGMELDTIPEDEAWEGLRSNKETKIVVKGEKESLICRICGVEFSELTALLDHSEDHSDIDCFPCTMCDRWFSNKSVLDTHFVEEHFGHKIEEAEVHQCESCGLSFKSAVRLESHVCGSSAATNRCLTCNKAFRSEARLEFHQRFHRGAKPGYCEVCQKTFPDELKLYKHTMYLHSQNKGHVCEECGKVFRSNSSLRYHQRSHQGEDIMKPYPCEYCGKCFIRKSMLRNHFVNTHKDKTQEGSCFTCKLCFEAFPSTDQAVNHMDIMHIPECSGETTYSFEMHTVKRLYLCEYCERCFTDPVNLNAHREHHPPEYPYQCKICNEAFSSSSLLEEHKKLHISAGVRDYMSEFTVPTVYMCEYCERCFMNNVKLSEHLTVHFGEEPYHCRFCDLKFKTQAEVSEHRLAHDQTLSPVEDSYRPYECHFCPKSFAIEDALVKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSDERPYSCPVCPRTFKIKGDRDVHVRKHSGDRPYKCDYCGKAFMTQHVYSQHRKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNICDICGKRYRQKGDMLKHRRLQHGIVKVRIQKVEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -