Hvit015717.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Homalodisca vitripennis
Gene Symbol
-
Assembly
None
Location
KK961775.1:1148108-1163946[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.7 98 4.6 1.8 1 23 300 322 300 322 0.95
2 19 0.0096 1.3 10.4 2.2 2 23 378 399 377 399 0.97
3 19 0.016 2.2 9.8 0.8 1 23 467 489 467 489 0.97
4 19 0.53 74 4.9 0.7 2 19 494 511 493 515 0.92
5 19 0.00068 0.095 14.0 1.2 2 23 564 585 563 585 0.97
6 19 1.4e-07 2e-05 25.6 2.0 1 23 590 612 590 612 0.97
7 19 1.3e-05 0.0018 19.5 6.7 1 23 617 639 617 639 0.98
8 19 6.7e-05 0.0094 17.2 2.0 1 23 645 669 645 669 0.92
9 19 1.3e-06 0.00018 22.6 2.1 1 23 801 823 801 823 0.98
10 19 0.019 2.6 9.5 0.5 1 20 828 847 828 849 0.93
11 19 0.00027 0.038 15.3 0.6 2 23 860 881 859 881 0.97
12 19 6.3e-06 0.00087 20.4 0.9 2 23 920 941 919 941 0.97
13 19 1.1e-05 0.0015 19.7 3.0 1 23 946 968 946 968 0.98
14 19 1.8e-05 0.0025 19.0 0.3 1 23 974 996 974 996 0.98
15 19 8.4e-06 0.0012 20.0 0.4 1 23 1012 1034 1012 1034 0.95
16 19 1.9e-07 2.6e-05 25.2 1.4 1 23 1040 1062 1040 1062 0.99
17 19 6.1e-05 0.0085 17.3 0.2 1 23 1068 1090 1068 1090 0.96
18 19 1.7e-05 0.0024 19.1 3.5 1 23 1096 1118 1096 1118 0.98
19 19 0.0015 0.21 13.0 0.5 1 21 1124 1144 1124 1145 0.93

Sequence Information

Coding Sequence
ATGGACGCGATGGAGGTGGATTCTTTGGGGAAAGAACAAAGTTATGACAATTTTGATTGTAATGTACAAATTTGTCGTGTTTGTCTACTAAGTGATCTTGACATGCGAGACCTATTTTCGGAAAACGAAACAAAGCCCTTGTCTGACAAGGTTATGAGTTTCACCAATGTAAAgATGTACTCTGGAGATGGATTACCCCAAAAGGTATGCTTTGGTTGTGTAGCCAAACTTGAGACTGCCTACGAGTTCAAATTACAAGTGGAACAAGCTGACAAAGTGCTGCGCAGTAAAAGTGAAACATTGGACATTAAAGAAAAATTCTTTAGTGAGGAGGGAGTTTCTGCTGAAGCTGACAGTGACAACGGAGTGGATGAAAGTTATATGGATGATTCGTTCGTGGACATGGATGATGATGCTGAAAAAACTATTGAGAATGAAAATTGTACGactttgaaagtttttaagcCAACACATACGAGTTTTGAAGAAGTCAACTGTCTATCAGTGGAAGATGATAAAAATACACAATGTgatgaTAAAAATCGAGATGAACAAAATACACATAGCCTCGCTTGTGATTTTCAACAAAACCAAAGTTCTGAAGTTGTAAATTGTCAAGCTCAAAGAAAAGATGGAAAAGTTTGTGGAACTGAAAAGGTGATGGTTGAACCGGAACAAACAATGACCCCTGCAGAAGACCCCTTAAAGTGTACTGATAATGAAGAAATATTGGTAGAACATGGTCATTCTCAGAATGCTGATATAAATAgtgaaaccattaaaaatacaatggcTTATGACCAAGACTCTGATGaagaaaactatttcaaacatttgaatCTTAGATCGAGGTCTAAGAAATTACCTGCTGATAGTTCAGACCcagataaagttttttttatatgttacttttgTGACAAACAGtttctttcaaaaaatatattgaaggaACATATGTATTCTCATGAAGAGGTTAGAAGATCTTTATCTCACAAAGGGACAGTGGAGAATAAGAAAACTTTGCCTTCACCAACAGACACTACTCCTCTCAAGATAACTCCCACTATTAGCACaccagtgaaaaataaaatttgtgaacaaatttcAATACCATCaggaaaaaagttaaataaatgccCTCATTGTGGAAAAGAGTACCTTTACATCAGTTCTTACACTAAGCATTTGAAACAACATGAAAGTGAGAAAGATATAGAAAAAGATGATCCAATGCCCCTAGAAATCTTATTCCATGAGGATGAAAGTagtttggattttgaaaattgtaatcaaaaGAAATTGATGAATTCAGGATTGAAGCCTGTGGAAAAGAAAGTCACTGAAGTGATAGATCCAGATGATAATAAATTAGATGAAAGAATTGAAGAACTTGTTATGTACGCTTGCAAAGAATGTGAAGAtaaattttttgagaaaaaagACTTGTTTGTTCATTTGTTAACACATGACATtagtttaaaatgcaaaatttgtcAGGAGGAATTTATCTTATTAGATAGTTGGCAAGCTCACTGTTTTGCACATGTCCAGGAAGGTAACCTCTCTAGCTATGATAATGAGGGGGCTGAggatactaaaataaatttattgaaggaAAGTAAAGATGatgattattttggttttgttgaTACTTCTAAAAATGATAACTGGACagaagtaaaagaattaaaatgtccAGAATGTCCTATGACATATTCACATAGAAGATCAGCATCTAGACACCTGGAAACTCATTTAGGTAAAAAACATCCCTGTGAAATTTGTGGCCTGGGATTTACAAGAAAAGACCACTTGCAAAGACACATGGAAACACATACAGGCACAAAATATCATTGTACTGTTTGTAGCAAAGAATTTACCAGAAAAGATCATTTGCAAAGGCACTTGAAACAACATCCTAAAGTAGTACCATATAGATGCActcaatgtaataaaagttttggaaACAAATTGACTTTGaaaaaccatttaaaagtttcaaatcatAAAACTGCTAGTTTTGAGCCAGATTTTGAATCAAACACACGTTCTATGAGAGTTGCAGCAAAAGCGGCCAAAgagtttattgatttaattagtGTAGAATTGCAGGGTGATTTTGTTAACGATGACGATGACGATGATGAACTGTGGACAGCCTCTGGAGAAAGTCATTCCCGTAAAGAAGAAGGAAAATTAAAGAAGTCTAATGTCAGGAATGAAACAGAAAATACAACTAAAAGCCGCAATGTACTTCAGACAAATCACAAGAAACAATTGGAAAGCAGAACTAAACGAAAGACCCCAAGTGATATtgataaagaagaaataaaaaatgaaaaagatgttGAAAATGACAACTCTGACTACGAAAGTGGTTTTGATATGTCAATGAATACGTATGAATGTTCAACCTGTAACAAGAGTTATAGCACTAAAAAATCACTAATGCGACATCAATTAGTACATGAAGAACCAAACTTTCAATGTGATATTTGTGGTCTCAAAATTTATCGAAAAGATAAATTCAATGAACACTACGAAAAATGCTGTGGGAAGAACCCGGATAAAgtcacaaaatgtaatatttgtgggGACAGTTTTGATAATAATGATTTACTAAGAGAGCATAAGTCGACTCATGTAGCTGAGGGAGTCCTTTCAGAGGAAGATCtcaaaagtattgaaattaaagtagAAGATAAAATATCGGATGTTAAAGTAATCAGAAAGAGAAGAACAGATATTGTGGGTTTGAAATGCCCAGAATGCAACAAACAGTACAACACAAGAAAAAATCTTTTGAGACATGTTCAAATACACAAAGACAAAcagttttcttgtaatatttgtCCCAAAAAGTTTTTCAGGCGAGAgcatttaaaagttcatttagcaaaacacaaaattgtaaagCCATACGCATGTGAAATATGTTCAAAACGATTTGTGAAAGAAGAGCAACTGGCTAATCATATGTCTAGGCACGATGGATTCCCTAAAAAGTCAAAGAACACGAATGGCTTAAAAAGATTTCTCTGTGAAATATGCTCCAAAACATTCACACAGTCAACCACTTTAGTCGCCCATCTCAGAGCGCATAGAGGAATTAAGCCTTATGTTTGCAAAGAGTGCTCTAGACCTTTTACCACAAAAGCTTATTTGCGAATGCACATGAGGACGCACACAAAAGAACGTCCTTATATTTGTCAGTATTGTTCTAAAGCCTTTGCCAGAGCAGACACTCTTGCGAACCATGTCACTCAGCATACAGGAGAAGCTAAATACCAGTGTAAATTTTGTCAGAAGAATTTCCGCCGTCTTAAGAATCTCAAGGAACACATCTTCATCCATACTGGACAAAGACCTTATGCATGCCCTACATGTGATCGAAGATTCAGCAACAATGGAAGCCGCTACGCACACAGGAAGAGGTGCCAACTAGATTTCTTAGAAAATCAAAACCGTAATGAAGAAGCTGAAGCCATGACGGAAGAAGTATTCCGACAACATATGCACGAAAGATTTAATCAGACATTTACTcaactttaa
Protein Sequence
MDAMEVDSLGKEQSYDNFDCNVQICRVCLLSDLDMRDLFSENETKPLSDKVMSFTNVKMYSGDGLPQKVCFGCVAKLETAYEFKLQVEQADKVLRSKSETLDIKEKFFSEEGVSAEADSDNGVDESYMDDSFVDMDDDAEKTIENENCTTLKVFKPTHTSFEEVNCLSVEDDKNTQCDDKNRDEQNTHSLACDFQQNQSSEVVNCQAQRKDGKVCGTEKVMVEPEQTMTPAEDPLKCTDNEEILVEHGHSQNADINSETIKNTMAYDQDSDEENYFKHLNLRSRSKKLPADSSDPDKVFFICYFCDKQFLSKNILKEHMYSHEEVRRSLSHKGTVENKKTLPSPTDTTPLKITPTISTPVKNKICEQISIPSGKKLNKCPHCGKEYLYISSYTKHLKQHESEKDIEKDDPMPLEILFHEDESSLDFENCNQKKLMNSGLKPVEKKVTEVIDPDDNKLDERIEELVMYACKECEDKFFEKKDLFVHLLTHDISLKCKICQEEFILLDSWQAHCFAHVQEGNLSSYDNEGAEDTKINLLKESKDDDYFGFVDTSKNDNWTEVKELKCPECPMTYSHRRSASRHLETHLGKKHPCEICGLGFTRKDHLQRHMETHTGTKYHCTVCSKEFTRKDHLQRHLKQHPKVVPYRCTQCNKSFGNKLTLKNHLKVSNHKTASFEPDFESNTRSMRVAAKAAKEFIDLISVELQGDFVNDDDDDDELWTASGESHSRKEEGKLKKSNVRNETENTTKSRNVLQTNHKKQLESRTKRKTPSDIDKEEIKNEKDVENDNSDYESGFDMSMNTYECSTCNKSYSTKKSLMRHQLVHEEPNFQCDICGLKIYRKDKFNEHYEKCCGKNPDKVTKCNICGDSFDNNDLLREHKSTHVAEGVLSEEDLKSIEIKVEDKISDVKVIRKRRTDIVGLKCPECNKQYNTRKNLLRHVQIHKDKQFSCNICPKKFFRREHLKVHLAKHKIVKPYACEICSKRFVKEEQLANHMSRHDGFPKKSKNTNGLKRFLCEICSKTFTQSTTLVAHLRAHRGIKPYVCKECSRPFTTKAYLRMHMRTHTKERPYICQYCSKAFARADTLANHVTQHTGEAKYQCKFCQKNFRRLKNLKEHIFIHTGQRPYACPTCDRRFSNNGSRYAHRKRCQLDFLENQNRNEEAEAMTEEVFRQHMHERFNQTFTQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-