Hvit022829.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK962013.1:17962-46136[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.71 98 4.5 0.4 5 21 787 803 785 804 0.92 2 22 0.099 14 7.2 0.3 1 20 810 829 810 831 0.93 3 22 0.037 5.2 8.6 0.6 1 20 839 858 839 859 0.96 4 22 0.0032 0.44 11.9 2.2 1 23 868 890 868 890 0.98 5 22 0.00012 0.016 16.4 1.8 1 23 928 950 928 950 0.97 6 22 0.00021 0.029 15.6 2.1 1 23 956 978 956 978 0.98 7 22 0.00027 0.037 15.3 1.6 1 23 984 1006 984 1006 0.97 8 22 1.8e-06 0.00025 22.2 2.3 1 23 1025 1047 1025 1047 0.96 9 22 0.00014 0.019 16.2 1.7 1 23 1053 1075 1053 1075 0.97 10 22 0.00023 0.032 15.5 0.1 3 23 1104 1124 1103 1124 0.91 11 22 1.8e-05 0.0026 19.0 1.9 1 23 1130 1152 1130 1152 0.97 12 22 4.9e-06 0.00068 20.8 1.0 2 23 1159 1180 1158 1180 0.98 13 22 4.9e-06 0.00068 20.8 1.1 1 23 1186 1208 1186 1208 0.98 14 22 0.00048 0.066 14.5 0.8 3 23 1237 1257 1236 1257 0.96 15 22 4.8e-05 0.0067 17.6 0.5 1 23 1263 1285 1263 1285 0.98 16 22 0.00014 0.019 16.2 0.7 1 23 1310 1332 1310 1332 0.96 17 22 0.0042 0.58 11.5 0.1 2 23 1339 1360 1338 1360 0.96 18 22 9.6e-05 0.013 16.7 1.0 1 23 1384 1406 1384 1406 0.97 19 22 1.6e-06 0.00023 22.3 1.4 1 23 1462 1484 1462 1484 0.98 20 22 0.00087 0.12 13.7 3.4 1 23 1494 1516 1494 1516 0.99 21 22 6.2e-06 0.00086 20.5 4.9 1 23 1522 1544 1522 1544 0.98 22 22 0.00094 0.13 13.6 2.7 1 23 1551 1574 1551 1574 0.97
Sequence Information
- Coding Sequence
- ATGATAACCAATGTTCataaaagtgatataaattatGTGGAAGATGTCAGTCAGCAACAGGATCAGAAATCCACAAGTGAAGATGACTTGTTATCCGAAGAGATGATGGATCCATCTTGTCTGTGTGAGGTTTTGCTGTATTCTTCAGATTCACAGACGGATTTTGATCCTATGCCTAacACACTTTCTGGATGCTATATAAATGAATTACGAGAACTACCTCAAGAACTTATGGGAGATGAAGGCCCAGAGGAAGAGGAGGAATACATTCTAAGTGACAATGGTGATTCTATTTTTGCCAATATGCTCAGAATACAACATTCTCGAGAGATAGAACATGTGCCTTCAAAATCAGACTACGTGCCTAATTTTAAACCTGCAGATTCATCTGCTTGTATTCCTGTGGACGTGCCTTGTGGCAAAACAGAAAATTTGCCTTCTTGTGAATCAGCACCAGAAACTCACCCTCTTACTAAAACTTCAGGTTTTATTAATATCGTACCAGAAAACTCCTCTTTATGTGAATCAGAAACATATTCTTCGTGCAGAGCAGAAACTTTTCCTATTATCAAACCTGCagatgttttaaattccaaaGAAGAAGCTTTGCTTTCTACAGAACGAGTAGCTTGTAATGGACAAACTACTATGATTTCTTGCAAATCAGGAACCTCTAATCCTGCAAATTCCAAACGAAGAAGTAGGTCTTCTCGCAAATCAAAAATATCTCCTTCCAACAAACGTACAAAGAGAAATTTATTGTCAAAGGCTTTGTCATCTCATGAGTCAGAAACTTCTCCAGACAAAGAATCTGCTGATGTTACAAATCCATCAGAAGCTTTGTTGTCTTGTAAGCcagaaatattttcttcttgCATACCTGTAACTTCTTTGGTCAAACCTGCAGATGCTATAAATCCAATTGCCGAAACTTTACCTTCTATTGAACTAGAACATTTTCCTTCATGTAAATTAGAATCTACTATGATTTCTGACAAATCAGGAACTTCTAAACCTAAAAGTTCCAAACGAAGAAGTAGGTCTCGTAAATCAAAAGTTTATTCTAGTAAACGTAGAAAAGTTGTAAAGTCAGTAGCGAAGGCTTTGTTGATTAGCGATCCAAACACATCTCCTACCAGCATACATGCAGAAGTCACAAATCCATCAGAAGTTTTGCCTTCTTGTGAAACAGAAATCTCTCCTTCTCGTACATCTGTAACTTCTTCAATTATCAAACCAGCAGATGTTACAAATCTCATAGATGGACCTTTGCCTTCTATTGATGTAGAAAAGGTTTCTTCATGTAACTTAGAATATAATACGATTTCTTGCAAATCAGAAACTTCTAAACCTTCAAATTCCAAACGAAGAAGTCGGTCTTCTCGTAAATCAAAAATTTATTCTAGCAAACgtagaaaagttaaaaattcagtATCAAAAGCTTTGTCGTCTAACGATTCAAAAACTTCTCCTACCAGCTCACTTACAGAAGTTACAAATCCATCAGGAGTATTGATGTCTTGTGAACCAGAAATCACTTCATGTTGTGAGTCAGAAACATTGCCTTCTTGCAAACCTGTAACTTCTATAATCAAACCTTCAGAAGTTATTAATCCTATTCTAGAAACTTTACCTTCTAATGAAAAGGAAGAATTACCAGCAAGTAACTTAGAAACTACTGTGATTTCTTGCAAATCAGGAACTTCTAAACCTGTACAACCGAAAAGAAGAACTAGGTCTTTGTATAAACTAGAAATTTCTTCTGTCAACAAACTTACAGAAGCAACAAACTTAGTATCAGATGGTTTGTCGTGTAGTGGATCAGAAACTTTTCCTGATAACAGACCTATGGAAGTTACAAATGCAGTATCAGAAGCTTTGTCGAACAGTGGGCCAGAAATTATTTTAGACAACAGACCTATGGAAGTTACAAATGCAATATCAGTGGGTTTATCTCATAGTGAACAAGAAACTCTTTCAGACAACAGACCCATGGAAGTTACAAATTTAGTATCAGAGGTTTTGTCTTGTGTGCCAGAAGTTTACCCAGTCAACAAATCGGACACAGATGTTACCAATTCCaaacaaaatgctttattttcCTGCGTACCTGATGCGGGGCCTGTCATGGAACCTGACAAAACTGTAATGCTGCCTCTATGTGAAAGAAGGATACTGATGGTGCTTCTTCACCGTTTGGAAGACGGGGAGTGCAGACTATGCTCCAACAAGaaTGGGGAGATTTCACCCTTCTTCTCTGCTGTTAAATTGCGTCTTCCAAAGCcaaagaaaaaacacaaaaaatcaagTGCCGATTACAAGACTTGTTTCAACCGTTACAGGaagtttagaaaatgtgtttgtaaaaaaatgtttatgaacgaTACATTGCTTAAGGCGCACCAACAGTCAAAGACATGTTTTCGCTTCCAGTGTAGGGGGTGTCTGCGACGGTTCAACAAGCAGGAGAAGTTGGACGAACATGTGGCATCCAAGTGTGAGACGGTCAAAGTATTCAGTTGCAACGTGTGCAACAGACGATATCTTTACAAACGGGAGCTGGTTAGACACATGACACCTGTGTGTCAGACTCTGAGGACTTTCAAGTGTGATTACTGTCCGAAGAAGTTCCTAGGAAACGAAAAAAGGAGAAAGCATATGAGAATTCACGGAGTTGGGATTTACCAGAGAAGTTTTTTGTGTGAGTTTTGTGGTAAATTATTGAGTTCATCACCATACAGGTTTCGAGAACATGTGCTCACACATTCAGACGAGACATCTTTCTTTTGCTCCACATGTGGAAAAGGCTTTAAATCTCGTAGAGGTCTACGTACTCATGCTACTACACATTCTGAAGAACGGCCTTTCAAATGTGCGGAATGCCACAACTCATTTAAAACGTTGAAACAATTGAAGGACCATTTGGCAGTACACGGGATGGGGTATTCTCATATATGTAAGGTCTGTGGCAAAGGCTTGAATAAGAAGTCGTTATATGAGAAGCATGTTAGAATGCATGAGATTCAAAATATTAAGAAGGAAGAGGTTCTCAATATTAAGGCGTGTGTGACCCATGATTGTAACCAGTGTGGAAAGTCGTTCAAGAGACGTGATCTTCTGAGGCAACATTTGTTAGTTCATAATGATGTAAAACCACACGAGTGTAAAATTTGTGGGACTTCTCTCAAGTATGCTAACAGTATGAAACGGCACATGCTTATGCACTTGAAGAAGTCTGTTGCGGATTTGAGTGATTCAAGAGTGCCTCACATAAAGAAAGAGTTTCCAGATGATAAAAAACCTGAAATTTGCAATGAGTGTGGAAAAGCATTTGCGTCTAAAGAAGCATTAAAATTGCATTCCACGGCTCACATGAAAGAACGACCTTTCAGTTGTGAAGTTTGcaaaatgtcatttaaaactCGTGTGCACCTTAACCAACATATGGTGGTGCATTCTGATGTGAAAcctaacaaatgtaatatttgtgggaaagtttttacaaaaagcCGAAGTCTAAAATTGCATGCATTGACGCATACTGATGAAAGACCTTATCCTTGCCAAATTTGTGGAACATTGTTCAAGTCACAAGACCATGTAAAACGTCACATGATGGTGCATACTAAGTCAAACCCATTTTTGGGCATAGAAAACACAGACGTTACTGAAATGAAAGAGGAAACTATGGATGTAAAGCCGCTTCTGTGTAATGTATGTGGAAAAAGTTTCACAAGTAGGCTTAAATTGAGACTTCACTCTTTGGTTCATACTGATGACAGACCATTTCCTTGTTCAGTTTGTGGAGTAAAATTTAAGGCACGTTTTTACCTGAGACGACACATGTTGGTACACTCCAAGACAACTACATCGGAAGAGCAATCACAAGCTGTTGTGAAGAAGGAGAATGTTTTGTTGGATAAACCATACGTCTGCAACACGTGTGGTGAGTCATTTATGAGCCatgaaaatctaaatttacactCGCTGATTCACAAAATCGAACAACCTGTTGTTTGTGCAATGTGTGGTGCTTTGTTTGAGTCCAACCATCAACTGGTACAGCACATGGCTGTGCACTCAGAGGAGGTTACTTCAGCTGACACTGAAGTGCCGGTCCAGATAAACACAGAAGAGGATAAAGCAACCCACATGTGTAGTGAATGCGGTCAGTCCTTTATCtctgtagaaaatttaaaagatcATTTCTTAACACATTTTGACCTGAAAGTTCCCACTGTTGCAGAAGTAGAGAAGCGAGAAAACAATTTGCTCAAGGCATACTTGCTGAAGAAGAACTCTCATGAAAGCAATACAAGTGAATCAACTCAAATATTACATCAGAATTACTACATCTCGAATGGAGACTCAATTGTTCGTCCTTTTACATGTGACTTGTGTACTAAATCATACCGCAGAAAGAGCGATTTAGATCGACATATGCTCGTCCATGGACTGGTGAAACCGGGTACTATATCTTTTAAATGCTCAGATTGTGGCAAGTTGTTTGGAGCAAAGTACAAATACGAGCATCACCTTAAAACTCACAGTGGGGAAAAGCCATTTCATTGTGACCAGTGTGGGAAAAATTTTAAAGAGAAGTATTCGCTACAAAGACACCAACAGACTCATGCTGATCAGAGGCAAATTTTCAGTTGTAATATATGCAAAGTGGGATTTTACAAGTTACAGAGCTTAAGACATCATATGAATAAAGTTCACGGAATGAGTAGTGACGTGGTGGatccaaaatttgaatttaaagtcgAATCTATTAAAGAAGAAAAGTTGGAAGACGCCGAGTTGCCAGTTCTTCATAGGTTACAGAATGTAGCTGTTCATGAAAGGGGATACTCTTCTGGAGCTTATTTTCAGTCGTCCTTCAACACCTTACACAATGAAATGTCCATTCCTGGGGTGAGTTTAGATCTGTCTGCCAAGACTGGAAATTTCAGGCAACAGTCTAGTATGCATTTGCTTACGATGATGACTGACTTTGATCAAGGCAAAGAAGAATTGCATTCAATAAAAACTGAATCTTTAATTGACATCCAACATTGGTAA
- Protein Sequence
- MITNVHKSDINYVEDVSQQQDQKSTSEDDLLSEEMMDPSCLCEVLLYSSDSQTDFDPMPNTLSGCYINELRELPQELMGDEGPEEEEEYILSDNGDSIFANMLRIQHSREIEHVPSKSDYVPNFKPADSSACIPVDVPCGKTENLPSCESAPETHPLTKTSGFINIVPENSSLCESETYSSCRAETFPIIKPADVLNSKEEALLSTERVACNGQTTMISCKSGTSNPANSKRRSRSSRKSKISPSNKRTKRNLLSKALSSHESETSPDKESADVTNPSEALLSCKPEIFSSCIPVTSLVKPADAINPIAETLPSIELEHFPSCKLESTMISDKSGTSKPKSSKRRSRSRKSKVYSSKRRKVVKSVAKALLISDPNTSPTSIHAEVTNPSEVLPSCETEISPSRTSVTSSIIKPADVTNLIDGPLPSIDVEKVSSCNLEYNTISCKSETSKPSNSKRRSRSSRKSKIYSSKRRKVKNSVSKALSSNDSKTSPTSSLTEVTNPSGVLMSCEPEITSCCESETLPSCKPVTSIIKPSEVINPILETLPSNEKEELPASNLETTVISCKSGTSKPVQPKRRTRSLYKLEISSVNKLTEATNLVSDGLSCSGSETFPDNRPMEVTNAVSEALSNSGPEIILDNRPMEVTNAISVGLSHSEQETLSDNRPMEVTNLVSEVLSCVPEVYPVNKSDTDVTNSKQNALFSCVPDAGPVMEPDKTVMLPLCERRILMVLLHRLEDGECRLCSNKNGEISPFFSAVKLRLPKPKKKHKKSSADYKTCFNRYRKFRKCVCKKMFMNDTLLKAHQQSKTCFRFQCRGCLRRFNKQEKLDEHVASKCETVKVFSCNVCNRRYLYKRELVRHMTPVCQTLRTFKCDYCPKKFLGNEKRRKHMRIHGVGIYQRSFLCEFCGKLLSSSPYRFREHVLTHSDETSFFCSTCGKGFKSRRGLRTHATTHSEERPFKCAECHNSFKTLKQLKDHLAVHGMGYSHICKVCGKGLNKKSLYEKHVRMHEIQNIKKEEVLNIKACVTHDCNQCGKSFKRRDLLRQHLLVHNDVKPHECKICGTSLKYANSMKRHMLMHLKKSVADLSDSRVPHIKKEFPDDKKPEICNECGKAFASKEALKLHSTAHMKERPFSCEVCKMSFKTRVHLNQHMVVHSDVKPNKCNICGKVFTKSRSLKLHALTHTDERPYPCQICGTLFKSQDHVKRHMMVHTKSNPFLGIENTDVTEMKEETMDVKPLLCNVCGKSFTSRLKLRLHSLVHTDDRPFPCSVCGVKFKARFYLRRHMLVHSKTTTSEEQSQAVVKKENVLLDKPYVCNTCGESFMSHENLNLHSLIHKIEQPVVCAMCGALFESNHQLVQHMAVHSEEVTSADTEVPVQINTEEDKATHMCSECGQSFISVENLKDHFLTHFDLKVPTVAEVEKRENNLLKAYLLKKNSHESNTSESTQILHQNYYISNGDSIVRPFTCDLCTKSYRRKSDLDRHMLVHGLVKPGTISFKCSDCGKLFGAKYKYEHHLKTHSGEKPFHCDQCGKNFKEKYSLQRHQQTHADQRQIFSCNICKVGFYKLQSLRHHMNKVHGMSSDVVDPKFEFKVESIKEEKLEDAELPVLHRLQNVAVHERGYSSGAYFQSSFNTLHNEMSIPGVSLDLSAKTGNFRQQSSMHLLTMMTDFDQGKEELHSIKTESLIDIQHW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -