Hvit014787.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961809.1:106563-120171[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00012 0.016 16.4 1.1 3 23 134 155 133 155 0.98 2 19 0.00036 0.05 14.9 2.0 2 23 160 181 159 181 0.93 3 19 2.4e-05 0.0033 18.6 0.3 3 23 191 211 190 211 0.96 4 19 0.00025 0.035 15.4 0.4 1 23 215 237 215 237 0.98 5 19 0.015 2.1 9.8 2.2 1 23 270 292 270 292 0.92 6 19 6.6e-06 0.00091 20.4 0.2 3 23 300 320 299 320 0.92 7 19 1.4e-07 1.9e-05 25.6 1.3 1 23 326 348 326 348 0.99 8 19 1.6e-05 0.0022 19.2 1.8 1 23 354 376 354 376 0.95 9 19 1.5e-06 0.00021 22.4 0.4 1 23 382 404 382 404 0.98 10 19 1.1e-06 0.00015 22.8 0.2 1 23 410 432 410 432 0.97 11 19 9.9e-09 1.4e-06 29.2 0.7 1 23 438 460 438 460 0.98 12 19 2.8e-07 3.9e-05 24.7 0.3 1 23 466 488 466 488 0.98 13 19 1.3e-07 1.8e-05 25.7 0.7 1 23 494 516 494 516 0.97 14 19 2.2e-05 0.0031 18.7 2.7 1 23 532 555 532 555 0.97 15 19 0.00024 0.034 15.4 0.9 1 23 572 594 572 594 0.96 16 19 7.5e-07 0.0001 23.3 1.0 1 23 600 622 600 622 0.99 17 19 3.7e-06 0.00051 21.2 3.9 1 20 628 647 628 650 0.94 18 19 0.00055 0.077 14.3 0.6 1 23 656 678 656 678 0.97 19 19 0.0014 0.2 13.0 1.4 3 23 686 706 685 706 0.95
Sequence Information
- Coding Sequence
- atggatATAACAAATAAGAGCCCAGAAAATAGTGAAGTTAAGAAGGAAAATGATTTGTTATGTACGGATAGCCCAAACCGAGATTCATTGTTACTACCGGTGGTGTCCTCAGAGCAGCCTACTACGTATCTGCTAGGTTCTGGTCTTCAGATGAACCAGGAGGAAGCACTGAGAGGTGTCAGTTTGGAGGCTCTCAGTCACATCATGCAGTCTTCCTGTCATCCGAGCAGCTCCCAGTTCAACCTTCTTGCTGAGGGGTTTGGCACCAACCCTGGCTACCAGAGCCCCTGTACCATCCAGACCTATAACAATGTGCAGGAGAAGACAGAGGAGCCTGTAGCAGAGGCTGTTTACTCTGATGATGACGAGCGTAGCACTGCCAATGACATCGGAGTTCTCTGTTCTGTCTGCAAGATGAGTTTCCGCAACACTTCTGAGCTCTTGAGCCACAGGCGGTCTGTACATCGGGGGCAGATCAGCTGTGAATTTTGCGGTAAAAACTTTGCCAACACACACAATCTAAAAATTCACTCATTTTCCCATACAGGAGACACAAGAtcaaaatcattttgtaattCTTGTGGAAAGGGATTTGTTAAACCTTCTGACTTGAGGCGACATGAACTGATTCATGCTGGAAGGTATTCATGTTTAGAATGTAACATCACTTTTAATACTGCTGATGAAGTCAAGGAACACTCTAAAACACATGATGATTTTTCTGGTAATTGTTCAGATTATAATAAAGACTTTGACAGTCACCCCTCTCGATCAGAGTTAGTTGGCGAACAACCAGAAAAAGAAACATTCACATGCGAGACTTGTGGGTTGACTCTGGaaagtaaatttgatttgaaaGCACACTGTCTAAAACACACAGATGCCTCACAAAACATTTGTGGAACTTGTGGTAAAAATTTTAGCCGACCCTCTGATCTGAACAGGCACTCTGTTATACATACGGGGGAGCGGCCGTTTACATGTTCGGAATGTGAAATGAGTTTCACTAACCAGAGCAATCTGAGAATGCACCTCATGACACACTCTGATGTTAAACCTCATCCATGTACGGTGTGTGATATGTCATTTCGCAGGTCAGCTGATTTGGAACGACACGCCTGTCTTCACAGTGGGGCAAGACCTTATGCATGCAATTTGTGTCCGATGGCATTCACCACCAGTTATAATTTGAAGATTCACCAACTAAGACACTCCGGAAGCTTGCCTTATCCTTGCTCTCAGTGCAAAAAAGCCTTCAGCAAACCATCAGAACTGCAGAGGCATGCTATTGTCCATTCAGGTGAACGACCATTTACATGCCCTCAGTGTGGAATGAACTTTTCAAATTCCAGTAATCTTAGAAATCATATGATAACACATACTGGGCGTCGCCCTTATCCTTGTAGTATTTGTAAAAAAGCTTTCACTAGGCCTTCCGATGTTAAAAGACATGTTTTAACCCACACTGGTGCTCGACCATTCGCTTGTCATATTTGTGGTCTAGCGTTTGCTGACTCTTCAAATTTGAAGAAACATACCTTAACACATTCCaaacatttaaaccatttaaacagATCAATGTTAACACTTCCGTACCATTGTCATGTTTGCAATATAACGTATAGTTCTTCAGGAGATTTTGAAGCCCACATGAGGAACAATCACAACGAGACGTCCAAGGATTTTTTGGGTAAAGTGGATGGCATCAAACAATATACCTGTGCGATCTGTGGCCTTCGGTTTGCCCACGCGATTCATTTGCAGGAACATTCACTGAATCATGATCGAGAACATTCATTCCAGTGCGAGATTTGTGACAAATCATTCTCCCAAGAACTGTTTCTCCAGCGGCATCTTCTCACCCATACGGAAGCTCGACCCTACGAATGTCCTGAATGTTTCAAGTGTTTCAAAAGTTcgtctcatttaaaaaatcatattccGATTCATTCTGGTGTGAAGCCTTTTGTATGTGTGACTTGCAACAAGGCATTTTTGAAGAACGCTTCGTTAAGACGGCATCAGTCAATCCATGCCAAAGGAAACACTGTAGCTTGCCACATTTGTGGGAAGAGTTTCCTTAACATGGAGTACCTCAAGAAGCACAGTGTGACTCATGAATCATAA
- Protein Sequence
- MDITNKSPENSEVKKENDLLCTDSPNRDSLLLPVVSSEQPTTYLLGSGLQMNQEEALRGVSLEALSHIMQSSCHPSSSQFNLLAEGFGTNPGYQSPCTIQTYNNVQEKTEEPVAEAVYSDDDERSTANDIGVLCSVCKMSFRNTSELLSHRRSVHRGQISCEFCGKNFANTHNLKIHSFSHTGDTRSKSFCNSCGKGFVKPSDLRRHELIHAGRYSCLECNITFNTADEVKEHSKTHDDFSGNCSDYNKDFDSHPSRSELVGEQPEKETFTCETCGLTLESKFDLKAHCLKHTDASQNICGTCGKNFSRPSDLNRHSVIHTGERPFTCSECEMSFTNQSNLRMHLMTHSDVKPHPCTVCDMSFRRSADLERHACLHSGARPYACNLCPMAFTTSYNLKIHQLRHSGSLPYPCSQCKKAFSKPSELQRHAIVHSGERPFTCPQCGMNFSNSSNLRNHMITHTGRRPYPCSICKKAFTRPSDVKRHVLTHTGARPFACHICGLAFADSSNLKKHTLTHSKHLNHLNRSMLTLPYHCHVCNITYSSSGDFEAHMRNNHNETSKDFLGKVDGIKQYTCAICGLRFAHAIHLQEHSLNHDREHSFQCEICDKSFSQELFLQRHLLTHTEARPYECPECFKCFKSSSHLKNHIPIHSGVKPFVCVTCNKAFLKNASLRRHQSIHAKGNTVACHICGKSFLNMEYLKKHSVTHES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -