Hvit023875.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK962474.1:195735-197758[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 5.5e-05 0.0077 17.5 5.7 1 23 10 32 10 32 0.96 2 22 1.1e-06 0.00015 22.8 2.3 1 23 38 60 38 60 0.97 3 22 3.4e-06 0.00048 21.3 0.5 1 23 66 88 66 88 0.97 4 22 0.00041 0.057 14.7 3.5 1 23 94 116 94 116 0.98 5 22 3.3e-06 0.00046 21.3 3.8 1 23 122 144 122 144 0.98 6 22 6.5e-07 9.1e-05 23.5 2.7 1 23 150 172 150 172 0.98 7 22 3.4e-06 0.00048 21.3 1.1 1 23 178 200 178 200 0.97 8 22 1.8e-06 0.00025 22.1 1.6 1 23 206 228 206 228 0.97 9 22 3.8e-05 0.0053 18.0 0.3 1 23 234 256 234 256 0.97 10 22 4.7e-06 0.00065 20.8 2.0 1 23 262 284 262 284 0.97 11 22 1e-07 1.5e-05 26.0 0.8 1 23 290 312 290 312 0.99 12 22 0.00013 0.018 16.3 1.4 3 23 317 337 316 337 0.97 13 22 1.5e-05 0.002 19.3 2.2 2 23 344 365 344 365 0.97 14 22 0.00015 0.021 16.1 7.9 1 23 371 393 371 393 0.97 15 22 2.7e-06 0.00038 21.6 0.9 1 23 399 421 399 421 0.97 16 22 7.1e-07 9.9e-05 23.4 0.3 1 23 427 449 427 449 0.97 17 22 1.8e-07 2.5e-05 25.3 1.9 1 23 455 477 455 477 0.98 18 22 5.8e-06 0.00081 20.5 2.6 1 23 483 505 483 505 0.97 19 22 1e-07 1.5e-05 26.0 1.2 1 23 511 533 511 533 0.97 20 22 1.4e-06 0.00019 22.5 2.9 1 23 539 561 539 561 0.98 21 22 1.1e-06 0.00016 22.8 1.7 1 23 567 589 567 589 0.98 22 22 0.0061 0.85 11.0 0.3 1 14 595 608 595 609 0.91
Sequence Information
- Coding Sequence
- ATGACTTGTCATTCTGGAGAGAAGCCTTTTTCTTGCAATCAATGTGGTAAGTCATTCACACACCGCTGCTATCTCAAAAGTCATGAGATCATCCATACAGGTGAGCGACCATTCATTTGCAGCACTTGTGGCAAAAGCTTCACAAAACGGAGTTATCTGAAAACTCACGAGCTGACACATTCTGGAAATAAACCTTATGCATGTACTCAATGTGGGAAAGCCTTCACTTTGAAGTCTACCCTGAAAAGTCATGAAATGATCCACTCAGGTATCAAACCCTTTTCTTGTGGTGAGTGTAGCAGAACATTTTCTCTCAAGTGTTATCTGAAAAGCCATCAACTGATTCACTATGGGGTGAAGCCTTATTCTTGTAAAGATTGTGGCAAGAACTTTTCTCAGAAGTGCTATTTGAAGGCTCACAAGTTAATACACACCGGGTTTAAACCGTTCCAGTGTGAtgaatgtgataaaaaatttacacaaaagGTCTATTTGAAAAACCACAAACTCACTCACTCTGGAATTAAGCCATATAGCTGTGATGAATGcccaaaaaagtttaataaaaacagctCTCTGAAAGCACATAAACTTTTACACAGCGGCATTAAACCATTTGCTTGTGATTTGTGTGACAAGAGATATAATCACAAAGGCAACTTAAAACAACACATGGAGATTCATATTAGTGGAAAATTGTTTGCTTGTAATTTATGCGATAAGAAGTTTTATAATCGTGCTGTACTCAAGAGTCACATCATTATACACAAGGGGGAAAAACCACATCAGTGCACAGTGTGTGAGAAAAAATTTGCGTTCAAGGGAAATTTGAGGATTCATATGTTGAACCACAGTGGGATTAGACCTTATGAGTGTGAGACATGTGGAAAGACTTTTGGATCAAAAGGGAATTTAAAAAACCATCGGCTCACTCATGGatctgaaaattgtaaaaattgcaaGAAACGGTTTCTTACAAAAGAAGAATTGGAGGCAcatatgaaaatacataaaaagagaGTGTTACCTTCTTGTGATGTTTGTGGCAGAACTTTCAACAATAAGACAAAACTTCAGATTCACAAAAAGAGACACAATGTTCCGACTCCACATGAATGTGAAGAGTGTGGAAAGAAATTTACACATTTATGCTACCTGAAGACACATCAGTTGAAACATACTGGAGAAAAACCATTTGCTTGTGAATTATGTGATAAAAGGTTCTCATTGAAATCATATCTGAGAAATCACCAATTAGTTCACGCCAGTGTGAAACCTTACATCTGTGATGTTTGTGACAAGGCTTTCACACAGAAGGCCACCTTGAAAAGCCACCAACTTCTTCACACTGGAGAAAAACCTTTTCAGTGTGATTTGTGTGATAAGTCATTTACACAAAAAGGTTATCTGAAAACACATCAGTTGAGTCACACTGGGGAAAAACCTTTTGTATGTGACATATGTGACAAGGCTTTCACACAAAAGTGCTACTTAAAATCACACAAATTGATTCACTCTGAGGAAAAgccatttgtttgtaaaatatgtgataaatcaTTCTCGCAGAAAAGCTATCTTAAGAGTCATGAATTAATTCACAGTGATGACAGACCTTATCCATGTGAGCTGTGCGATAAGGCATTCACACAAAAGTGTTACTTAAAGAATCACCAGTTAACACATACTGATGAGAAGCCTTTTGTGTGTGACATTTGTGATAAGGCTTTCACACAGCAATGTTATCTGAAAACACATCTTCTCATTCATACAGATGAGAAACCATTTGTTTGTGAGGTTTGCGATAAAAGGTTCAGCCAGAAAGGGCTTCACTCAGAGATGTTATCTCAAAACACATCAGTTAGTCCATTCTGA
- Protein Sequence
- MTCHSGEKPFSCNQCGKSFTHRCYLKSHEIIHTGERPFICSTCGKSFTKRSYLKTHELTHSGNKPYACTQCGKAFTLKSTLKSHEMIHSGIKPFSCGECSRTFSLKCYLKSHQLIHYGVKPYSCKDCGKNFSQKCYLKAHKLIHTGFKPFQCDECDKKFTQKVYLKNHKLTHSGIKPYSCDECPKKFNKNSSLKAHKLLHSGIKPFACDLCDKRYNHKGNLKQHMEIHISGKLFACNLCDKKFYNRAVLKSHIIIHKGEKPHQCTVCEKKFAFKGNLRIHMLNHSGIRPYECETCGKTFGSKGNLKNHRLTHGSENCKNCKKRFLTKEELEAHMKIHKKRVLPSCDVCGRTFNNKTKLQIHKKRHNVPTPHECEECGKKFTHLCYLKTHQLKHTGEKPFACELCDKRFSLKSYLRNHQLVHASVKPYICDVCDKAFTQKATLKSHQLLHTGEKPFQCDLCDKSFTQKGYLKTHQLSHTGEKPFVCDICDKAFTQKCYLKSHKLIHSEEKPFVCKICDKSFSQKSYLKSHELIHSDDRPYPCELCDKAFTQKCYLKNHQLTHTDEKPFVCDICDKAFTQQCYLKTHLLIHTDEKPFVCEVCDKRFSQKGLHSEMLSQNTSVSPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -