Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.2e-05 0.02 15.8 0.8 19 41 160 179 154 181 0.91

2 5 0.1 1.7e+02 3.2 0.1 18 41 187 207 182 209 0.82

3 5 0.0044 7.1 7.6 1.1 5 38 203 236 199 236 0.80

4 5 9.6e-05 0.16 12.9 0.7 18 40 243 262 239 265 0.89

5 5 0.31 5.1e+02 1.6 3.0 6 40 260 290 259 292 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.2e-05	0.02	15.8	0.8	19	41	160	179	154	181	0.91
2	5	0.1	1.7e+02	3.2	0.1	18	41	187	207	182	209	0.82
3	5	0.0044	7.1	7.6	1.1	5	38	203	236	199	236	0.80
4	5	9.6e-05	0.16	12.9	0.7	18	40	243	262	239	265	0.89
5	5	0.31	5.1e+02	1.6	3.0	6	40	260	290	259	292	0.78

Coding Sequence: ATGTCACCGGGAGGAAACTATGCTCCGACACAATACGAGCAGAGCAGCTACCATCACCAGGCGCCAGTGTTCCCGAGCATGAGCGTGAACGTCAGCATGAACATGACCATGCACGGTTACCCGCCCACCATGACTGACAATCTTCAGCACCAGATGACGTGTCCTCAGATGCAATGGACAGCCGCGGCGCCGTCCAACCCCTCGCCAGTCTACCAGAGTCAGGCATTGCTGAGTCCTCAGCCCGCCTACCCAGGGGGTGCCACGTACTCCTTCACTGCCGACTTCCGCCCTCCTCCCCCCGACCAACCCTTCATCTGTTCTTCCACTCCGTCCTCCTTCAAGCCCGTCATCAACAAGTCTGCCGCCTTCCCGCCCAACAATTCCTGCCTGAGGTCCAGCAAGCGGCCTACGCCCAGTGTCGGCAAGGTGCCGCCCGCCCTAGGCTCTCTGGAAAACGACTCGTCCAGACCCAACCTGTGCCGCATTTGTGGCAAAACCTACGCTCGACCTAGCACACTGAAGACCCACCTACGGACACATTCGGGCGAGAAACCTTACAGATGTGACGACTGTAACAAGTCGTTCAGCCAGGCCGCGAACCTCACGGCGCATGTCCGTACTCACTCCGGCGAGAAACCCTTCCGCTGCCCCATCTGTGCCAGGAGGTTCTCCCAATCGTCCTCAGTGACCACACACATGCGCACGCACTCGGGCGAGCGGCCGTACCGCTGCCGACTTTGCAAGAAGGCGTTTTCTGACTCATCAACGCTCACCAAACACCTCAGGATACATTCGGGGGAAAAACCGTACCAGTGCAAGCTCTGCTTGCTGAGATTCTCCCAAAGTGGTAACCTGAATAGACACATGCGTGTGCATGGCAGTGCTGCTGGCAGTCTGCTGCTGCCCGCGTGA
Protein Sequence: MSPGGNYAPTQYEQSSYHHQAPVFPSMSVNVSMNMTMHGYPPTMTDNLQHQMTCPQMQWTAAAPSNPSPVYQSQALLSPQPAYPGGATYSFTADFRPPPPDQPFICSSTPSSFKPVINKSAAFPPNNSCLRSSKRPTPSVGKVPPALGSLENDSSRPNLCRICGKTYARPSTLKTHLRTHSGEKPYRCDDCNKSFSQAANLTAHVRTHSGEKPFRCPICARRFSQSSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGSAAGSLLLPA

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00727715; iTF_00052167; iTF_00727668; iTF_00052117; iTF_00808566;
90% Identity: iTF_00727668;
80% Identity: iTF_00808566;