Hvit014506.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961652.1:1010959-1013384[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.9e-07 0.00021 21.7 0.1 7 43 13 49 12 51 0.92 2 2 6.2 2.3e+03 -0.7 0.0 21 34 108 121 107 128 0.80
Sequence Information
- Coding Sequence
- ATGCAACCTAACCTCAAACACGAAGTAGAAGGAAGAAGGGCGATTGCGTCATTCAAGAACGGTTATACGGGCATTAATGCAGTTTGTCGGGTGTACGGGGTGccgaaaaaaacattaaaacgtcaCCTCGCCGGAACAAATACCTATGCAACTGATTGTAAACAGGTGTTCGGTCGTCCTCAAGACTTGCCAGCTGAgCATCCACAGTTGTCTTTACGAAAACCGGAGGCAACATCAATGGCTAGGGCCAGTAGTTTTATAAAGGAGAGAACGGATATTTTCTACGATACcttgacaaaaataattaatgaaaacaagcTGCAAGCCTCTGACATTTTCAATGTCGACGAGACTGCCCTTTCAACCGTCCAGAGGCCACGTTTGAGATTCAAACCCGAATGGAAAAAAGGAGCTCATCCTGGAACCACGGTCGACATGACTGAGAGTAGTTGGAGCAATGCTGAGCACATAAACGACGCAAATTGGACCGGCTGGACGCGGACGGGTGGGACCGTGGCGTGCGGCGACCGTGACATGAGGGTGCGGGGTGACTCAGCGACAAGTGTCACCAGATCAATTGAAGCAAAGCAACATTAA
- Protein Sequence
- MQPNLKHEVEGRRAIASFKNGYTGINAVCRVYGVPKKTLKRHLAGTNTYATDCKQVFGRPQDLPAEHPQLSLRKPEATSMARASSFIKERTDIFYDTLTKIINENKLQASDIFNVDETALSTVQRPRLRFKPEWKKGAHPGTTVDMTESSWSNAEHINDANWTGWTRTGGTVACGDRDMRVRGDSATSVTRSIEAKQH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -