Hvit005536.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961575.1:3176270-3177802[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.7e-08 1.7e-05 25.2 0.0 1 38 11 48 11 53 0.93 2 2 0.34 1.2e+02 3.3 0.0 13 23 131 141 128 143 0.87
Sequence Information
- Coding Sequence
- ATGGCTCCTGTAGCTAAGAGGAAGAAGTGGGACCCTGAAAGAATGAAGTGCGCTGTGTTAGCAGTCAAAGACAAAGAGATGGGGTCATTTAAGGCTGCGAGAATTTTCAACGTAACCCAAACTACATTAGAACGTTATGTTAAAATTGCTAACAATTCAGATGGTCCTTCTACTCCAAATCCAATCGTTAGACCTGTAACTCTAACAAAAGTCATCGAATATGATCTTGATGCCAAGTATTGCGTCATAATGGAAAATAAGTTTTACGGATTAACAATAAGAGACGTGCGATCAATGGCGTTCAGATTGGCAAATTTAAATGGTGTTACACATAAATTCTCGAAGGAGTCTGAACTTGCTGGAAAGAAGTGGCTTAAAGGGGTTTTCCAAAGGAACAAACAACTGTCAGTGCGACAGGCACAGGGTTTATCTTTTGCCAGAGTTAAAGGTTTCAACCCCGTAGATGTGGCAAAGGTTTTTGAATTGTTTGACTCCTGCCTGCAGAAAATAAAGTCCAACCCAACGACTGGTCTCTTCCCAATAAACAAATATCGATTTGGACCAGAAGACTTCCCTTTGCATCCAGAATTTGCTGCGAATGATTCAACTGATCCAGTTCTTGAACAAGAACCTCAAGCAAGTACAAGCTCTATGGTGACTGAGGGGACAAGTTCCACTTCCAACCAAAAAACAAGCTTCTCACCTAGTCAGAGAACAAGCTCTAATGCTGATCCAACATCTCCGTTGAGTAAGGCGTGTGACATATCACCCATTCCTAATTGGACTgaacaacaaaaaaagaaaagtagTCGAGCAAGTTCGTCAGAAATAATAGCAAGCAGTCTCTATAAGAAACGTTTCGAAGCAGACAACAAAAATCgacttaaaaaaacttacaacGAAAAATAA
- Protein Sequence
- MAPVAKRKKWDPERMKCAVLAVKDKEMGSFKAARIFNVTQTTLERYVKIANNSDGPSTPNPIVRPVTLTKVIEYDLDAKYCVIMENKFYGLTIRDVRSMAFRLANLNGVTHKFSKESELAGKKWLKGVFQRNKQLSVRQAQGLSFARVKGFNPVDVAKVFELFDSCLQKIKSNPTTGLFPINKYRFGPEDFPLHPEFAANDSTDPVLEQEPQASTSSMVTEGTSSTSNQKTSFSPSQRTSSNADPTSPLSKACDISPIPNWTEQQKKKSSRASSSEIIASSLYKKRFEADNKNRLKKTYNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -