Hvit003982.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK961529.1:4342480-4359756[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.33 1.2e+02 3.3 0.0 27 39 60 72 58 77 0.82 2 2 2.2e-09 8.1e-07 29.5 0.2 5 44 99 138 97 139 0.90
Sequence Information
- Coding Sequence
- TTGCATGTAGTGAGTGATGAAAACACAACCAAAGTTAGTGAAAACTTGATTCCTGTGCAAGTAAAGGAAGAGATTCTAGGTTCAGAAGACGGGTCAATATCTCTGGGTAATAATCTAGAAATTGTTTCCACTAATCTCGGCCAGAATGACGGCAGTACCAGCTTCACAATCATTGCAGATATACCAAAGACTACATTGTTCAGGGAGAAGAGCAGACTTGTGGAGGCTGGAAAGCTACCCTTGTCATGCTTGAACCGACGAGTGCCTAACAATGATAGCCATAAGCAGGTGCGGCTCACACAGGCAGTTGCGGCATGTAAGGAGGGACGCATGTCACAGGCAGCAGCCTCATCAACATTCAAGGTTTCGAAAACCACAATATGGAGAAGGTTACATCAAAGTGGAGGAACaaaacagatgaaatatttagaGCCAAAGACTGAGCCAgaAAATGAAGATCAATCTGATTTCAGCTTACATATTGCTACTCAAGCTCCAGAAAATAAAAGAAGACGTAAACGGGAGTTTTCTAAGAAAGATTATAGGTATAAATTG
- Protein Sequence
- LHVVSDENTTKVSENLIPVQVKEEILGSEDGSISLGNNLEIVSTNLGQNDGSTSFTIIADIPKTTLFREKSRLVEAGKLPLSCLNRRVPNNDSHKQVRLTQAVAACKEGRMSQAAASSTFKVSKTTIWRRLHQSGGTKQMKYLEPKTEPENEDQSDFSLHIATQAPENKRRRKREFSKKDYRYKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -