Hvit025851.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK962998.1:30689-33457[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-12 8.8e-10 39.0 0.0 2 37 116 151 115 156 0.92 2 2 2.9 1e+03 0.3 0.0 14 26 573 587 566 592 0.71
Sequence Information
- Coding Sequence
- ATGTGCAGTTTATATTCTGTATCAAGGAAAACTCGTATATGGCCTTTAGTGATCTTCTTCTGTTTGCTGAATACTGTAGGCATAAATGCTCAGGTAATTCACTCATCAAACCACAACTTTGAGAGGAGAATAATCAGaagaaaatttttgaaagaaattagcCTAAGTCTTGTAAGGCCATTCATGCCAATAAGAGTGCACATTCTGCGTCTTCCTGGAGAACTTCGATCAAGTATTAAGAAGTTTCTGCCTGAAGAAGAAGTAGAGGCAAAGGTGGTATTATGGGCTATGCCTAGGAAAGTTTTAAATCCACGTAAGAAGAAACATAATCGGCAATGTTGGGACCAAGACAAAATGAAAGCGGCAATTGAAGCTGTGTCAGAGAAGAAGATGGGCTTTTTAAAAGCTTCCAAAGAATTTTCGGTACCTCGGACTACGCTTCAAAGACTAGTTCATCTGGGAATACCTCCTGAAGAAGCGGTTTCAAGAAAATTGGGAAGGAAACCAATTATGCCCAGTGAAATGGAAGACGAACTGGTTTACTATTTGCTTCTTATGGAACAAAAGTTTTATGGTCTAACGAGAGATGATGTTAGGCGTTTAGCCTTTCAACTGTGCGAAAGGAATGGAGTAGACCATCCATTTTCTGGTATTGGAATGGCTGGCAGAGCGTGGTTTGACCACTTTTTACACCGTCATAAGGATGTGTTGTCTGTTCTAAAACCAACAGCTATATCATTTTCTAGAGCTAATGGCTTCAATGAAGATGCTGTTAATGGGTTTTTTGATATCCTAGAGGCAGAGTTAAGAAAGTGCAACTATGCTCCTGACCGCATATTTAATGTGGATGAGACCGGTTTGTCCGTCGTACAGAGTAAGGTACCTAAAGTTGTGGGCTTTAAAGGTAAACGGCAAGTTGGTGCCTTAAGTGCTGCCGAAAGAGGGTCTCTTGTGACTGTTGTGTGTTGTATGAGCGCCAGTGGGACATTTGTTCCACCACTGATGATTTTTCCTAGGAAAAACATGACAGATGTCTTGATGAAAGGTGCCCCTCCTGGTTCCATAGGAAGAGCCCATCCATCTGGTTGGGTTCAAGGAAATTTATTCACCGAGTGGTTAAACCATTTCATCAAAAAAGGTAACCCTACAAAGGAAAGTCCGGTTCTTCTTATCCTTGATGGGCATAACACCCACACTAAGAATATTGATGTTGTAGATATTGCAAGACGCAACCACATAACAATAATTAGCTTACCACCCCATACCTCTCACAAGATGCAGCCACTAGACAAATCATTCATGTCTCCACTCAAACATCATTATAGTGAAAATGTTAGGCAATGGATGCTCCATAATGATAAACCACTCGGACCGTATAACATAGCTGAGCTGTTTGGAAAAGCCTATCTAAGGTGCCAAAGTGGTCAAATAGCCGTCAATGGTTTCGAACTTTGTGGAATATATCCATGCAACCGAAACATCTTTTCAAATGTGGACTTTGGTCCTTCAAATATGGAAGAGTTGGACATAGACACTCTTCGTGCTCTTAAGGGCAGGAAGAAATCCATAAACACTCCATGTCTTGCGCCTCAAGAGGACATTATCAATGGCCCAGGGACCGCACCCCAAGCCACTGGGAGCACACAACAGCTTCAGAAATCTAGCGCAGTCCAGAGCAACACACTCTGTGCTAAAGACCTAGCAGAAGCTTGTCCTTCAGGCATGTCATCCATGTCAATGAAAAAGGCAATGAGACATTTTACCTGTTCCAAAAACAAGAAAAGATTGACAAATAAAGGACCCAAACCAGCAAAAGCTGCAGTTATAACATCGTCaccatataaattaaatttggaagaaGCTAAGAGAAAAAGTGAGGAAAAGGAAGGTGATAAGCAAAGGAAGTTACCAATTGGAGTTGAAATCTCCACAAATGAAGACGCTCCCTATATTTTCTGTGATGAGTTATATTCAAATGATAGGAAAGGAGAATTATGGGTTCAATGTTTAATGTGTGGAATGTGGGCTCACAATGAGTGTGCTGGCTGCGAAACTGAACATTATATTTGCGATTTCTGTAGACCaaataaagtctaa
- Protein Sequence
- MCSLYSVSRKTRIWPLVIFFCLLNTVGINAQVIHSSNHNFERRIIRRKFLKEISLSLVRPFMPIRVHILRLPGELRSSIKKFLPEEEVEAKVVLWAMPRKVLNPRKKKHNRQCWDQDKMKAAIEAVSEKKMGFLKASKEFSVPRTTLQRLVHLGIPPEEAVSRKLGRKPIMPSEMEDELVYYLLLMEQKFYGLTRDDVRRLAFQLCERNGVDHPFSGIGMAGRAWFDHFLHRHKDVLSVLKPTAISFSRANGFNEDAVNGFFDILEAELRKCNYAPDRIFNVDETGLSVVQSKVPKVVGFKGKRQVGALSAAERGSLVTVVCCMSASGTFVPPLMIFPRKNMTDVLMKGAPPGSIGRAHPSGWVQGNLFTEWLNHFIKKGNPTKESPVLLILDGHNTHTKNIDVVDIARRNHITIISLPPHTSHKMQPLDKSFMSPLKHHYSENVRQWMLHNDKPLGPYNIAELFGKAYLRCQSGQIAVNGFELCGIYPCNRNIFSNVDFGPSNMEELDIDTLRALKGRKKSINTPCLAPQEDIINGPGTAPQATGSTQQLQKSSAVQSNTLCAKDLAEACPSGMSSMSMKKAMRHFTCSKNKKRLTNKGPKPAKAAVITSSPYKLNLEEAKRKSEEKEGDKQRKLPIGVEISTNEDAPYIFCDELYSNDRKGELWVQCLMCGMWAHNECAGCETEHYICDFCRPNKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00808250;
- 90% Identity
- -
- 80% Identity
- -