Hvit020105.1
Basic Information
- Insect
- Homalodisca vitripennis
- Gene Symbol
- -
- Assembly
- None
- Location
- KK962648.1:889818-927372[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.9e-09 1.8e-06 28.4 0.0 1 42 11 52 11 54 0.92 2 4 5.1 1.9e+03 -0.5 0.2 31 41 167 177 166 180 0.81 3 4 3.9e-10 1.4e-07 31.9 0.0 2 42 214 255 213 257 0.94 4 4 1.5e-08 5.5e-06 26.8 0.0 1 38 258 295 258 300 0.88
Sequence Information
- Coding Sequence
- atgccgttttataaaccaaaactaaaatacacaGAAGAAGCTGTAATTAAGGCCATCAAAGCTGTTGAGAATGGAAGTACATTCAGAGCAGCAAGCAAAAAGTTTAATATTCCTGATTCTACTCTTCGAGACAAGTACTATGGGCGATCTCCGATGGAAACCACTGAAGATTGCCGAACGTCCATTCCAACAGTCGAAAAGGAGAAGATGATCGCTGAAAGGGTAAGAACAATGATGCAAGATGGATTTCCCGTCTCCAGGCAGCAACTGCTGGCTATAGCATGTGACACTTTGAATACACCAAGTACCAAAAGATGTACCAAGGACAATTATGCACCTAATATGAAGTGGATAGCTGGTTTTCTGCAGAGACACCCGGAAATATCGGACCTGATGGAGTATAGCCAAGCTGTAAGCGAGAGGAACATTTTTGAAGTTGACGGAAATGTGGTTATCGAAGTGGTCGATGATGATGATAAAACAATCGCATCAAGGTCTTCTACACTTAGAAGTTGTGTAAGGAGAGAGTCATCGAGGAGTGTCATCACATGGACATCTCCTCCAATCTCTCTTGGCGGGGAAGATAATTTGAAAAGGAAAGTACCTAAGAGAAGGAAAAGGACAAGAAGACAATACACTTCTGAAGACTTGAACAGAGCCATACAAGCTATCAGATGTGGTGCTTTTAATGTGGCTACAGCTGCTAGGCTGTTTGGAATACCCCAAACAACGCTAAACGATAAGACAAAGAAAAGTAATTATAAAACGTACACCAATGAAGATGTCGATCAAGCTATCAAGGCTATCAAGGAAGGGAGTACTTGCACTCAAGCTGCCAAGACATTCGGACTGCCACGATCAACGTTGCAGGACAAATTCAAccaaaaatacaatttgacaCATGCATTTTCTGTAACATGTGAAGATGAAAAGACGATTATAGAAAAGTTTGAATCGATCTCACAGGAAGGTTTTCCCATCTCTGAGCAGCAGCTAGTGTCTATAGCTGTCAACACTCTCAACAGCAAACACAGAGAGAGCTCCACTCCACCTATCAAACATGACATGAAATTGGACTTTTGGCTCGCAAACTTTCTAAGCAGACACCCAGAGATAAAGGAGAGACTGTCCCTAGCACCACCCACCGAGGACCAGCTGCTCAGCTGGTTATGTGAtgatgataataaatatttgtaa
- Protein Sequence
- MPFYKPKLKYTEEAVIKAIKAVENGSTFRAASKKFNIPDSTLRDKYYGRSPMETTEDCRTSIPTVEKEKMIAERVRTMMQDGFPVSRQQLLAIACDTLNTPSTKRCTKDNYAPNMKWIAGFLQRHPEISDLMEYSQAVSERNIFEVDGNVVIEVVDDDDKTIASRSSTLRSCVRRESSRSVITWTSPPISLGGEDNLKRKVPKRRKRTRRQYTSEDLNRAIQAIRCGAFNVATAARLFGIPQTTLNDKTKKSNYKTYTNEDVDQAIKAIKEGSTCTQAAKTFGLPRSTLQDKFNQKYNLTHAFSVTCEDEKTIIEKFESISQEGFPISEQQLVSIAVNTLNSKHRESSTPPIKHDMKLDFWLANFLSRHPEIKERLSLAPPTEDQLLSWLCDDDNKYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -