Hpla003514.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hololepta plana
Gene Symbol
prdm10
Assembly
GCA_963695495.1
Location
OY968832.1:11660460-11663532[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 8.2e-06 0.00069 19.6 0.7 2 23 297 318 296 318 0.97
2 11 0.64 54 4.2 5.2 2 23 348 371 347 371 0.83
3 11 2.5e-05 0.0021 18.1 0.7 1 23 435 457 435 457 0.98
4 11 1.7 1.4e+02 2.9 3.6 1 23 465 487 465 487 0.92
5 11 0.00018 0.015 15.4 0.9 1 23 494 516 494 516 0.98
6 11 0.00069 0.058 13.6 2.8 1 23 522 545 522 545 0.96
7 11 8.1e-05 0.0069 16.5 2.3 1 23 550 572 550 572 0.96
8 11 1.7e-06 0.00015 21.7 2.4 1 23 578 601 578 601 0.97
9 11 0.0068 0.57 10.4 1.8 1 23 639 662 639 662 0.97
10 11 3.2e-05 0.0027 17.7 2.3 1 23 684 707 684 707 0.97
11 11 0.00091 0.077 13.2 3.4 2 23 745 767 744 767 0.96

Sequence Information

Coding Sequence
ATGGTAAATGAAACAGAAGATATTCAGGATGATACAGTCACTACAAATAGTAATACTGCCCCTAATGAATTAgcaattgataatgaacaagatgtggaattattaattactgaTCAAGCTACTGGAATATCATTTAGTGTAAATGCTCAGCAATATCTTGTAGAGCAGTGTTTAACTGATAACCAATTGCTGGAGACCTTAACACCTGATCCATTATTAGAAACTGACTTGCTGGCACTGGATGAAAATGCTCTAAAAACACAATTAGCAGATATTGCCTTGACTGCTGGTGAAAATATATCCACATCTGAAACTGATTTAAACAAGGAGAtcatttctttagattttgaTGATAGTGCCCTAAGGAGATCGCAGAGACAGCAAAACTTTGTCAATAGCATTGATTCAGATGAACAACTGTtaacTTGTGTACAATCCATAACTGATAAACCAGTACCTACTAGAGCAAGAGCAACATTAccagaaaattatttaaacattaacaaaattgatgatgacTTTGGTGTATTTGCAAAGAAACTTATAGCAAAATCAACTCAATTTGGGCCCCTGGAAGGAAATATTAGTACTAAAACATTTGAGGTAACTAATGATAAATTGGCCTTATTTATAGATAAAGGTGATGGGAATGTGGACCAGTTAGATATATCAGATGAAAATGCTGCAAACTGGATGTGCTACGTTCGTAAAGCTAGTAAATACTCGGATCAAAATCTTGTTTTAATGCAACAAGGAGATTCACTCTATTATATAACAACCAAACCAATTTTGCCAAAACAAGAATTAATGGTGGGATATGGAAGTTCTTATGCCAAAGCCCATAAATTAGAAGTACTAATGCCACCATCAGAAGAGAAAGATACTTGGCAGTGTTATGAATGTAGTCAAAGTTTTTCTACTTCACAACTCTTACAGAAACACCTTAATGTACATGATGATTCCAAAGACGAAAATTCAAAGCCAAAGAAGAGATCATTGAAGAAGAAGCTTGTcaagaaaaagataaaatgTGATATTTTACAATGTAATGAATGCAAGGAATGTTTTGTTAATCCTAAGCACAGCATTTTGAAAGATCACATGGTTACTCATGGATTTACTGAGGGGACAATCGAGGAAAAGTTTACCGTTACCAGGAGCAGCGACCAAAATCCGAATAAGGAGACAAATGGTGCTGACGGAGCAAAACAGTATTTTTGTACGAAATGTTGCCTTGTATTTGATAATATTGAAGACTATCATTCTCATTTTATAGTACATActcaagaaaataagaaaaattatcgATGTTCTATTTGCTACAAAGTTTTTGCAACGCGAGAAAGAATTCAGAAGCACATGCTTGTTCATGGTTCAGATGAATCAAAACCATATCTATGTGATAAATGTTCAAAGCGTTTCCTAAGCACATCTGCCTTAGCTTGTCACAAGAAAACGCATTTTTTCGGTAGGAAAGTGTTCGAGTGTCCGATATGCAAAGAGAGTTTTGTTCACGTGTTATTGCTGAAAGAACATACGAATAAGCACTGCATCGATGGTAAATTTACGTGTCCccattgtaataaaatatttacgaagTATAGCATAATAAGGAAACATATTCGGGCGTTTCATTGTGAAAGGAAGCACACGTGTACCGATTGCGAGAAATCGTTTCCTACGTTGGATAAATTACGCATGCACTCGCTTAGGCATTCTGATCATAGGGAGTTTTCATGCACAGAATGTGATAAACAGTTCAAAAGGAAAGACAAGTTGAAAGAGCACGCACGAAGAATGCACTCGGATGAACGCAAGAATAGTAACAGTAATAGCATGCTGATCGAACAAAACGTGCAGAATACAAGAAAGTTTACGCCAAAAGTCGAACCTACAGACTACCATCGTTTCATATACAAATGTCACACTTGCATGGTCGGATTCAAGAGACGAGGCATGCTCGTTAATCACTTGGCTAAGAGACATCCGGATATTAGTCCCGATACTGTACCTGAGCTGAATTTACCGATTTTGCGAACGAcccgcgattattattgtcaatATTGTGATAAAGTGTACAAgtcgagctcgaagaggaaagCGCATATTTTAAAAAACCATCCGGGTGCCGAATTGCCAATAAGCAATAGAAAAATTGGCACTAACGAGAATCCAGATCTTCCGAATGCAACGTATTCGCACGCGGTCGGTTCTATAACCACCCATCCGCAATCTTGTCAGTGGTGTCACAAGCAGTATGCTAGTAAAGCCAAATTGTTACAACACCAGCGTAAGAAGCATGCAAAGATATTGTTAGAGATGTCTATGAAACAGGATGATGGCAAGAACGAAATGTTGGCCGATCAAAATGTCCAAACGAATCAACTTGAAGATATAGCCGTGGATACACAATGTTTTAAACGCGATTTAAAAgTCTCTgatataataaacgaaatggTCGAATTTGATGATGGCCGTGGACAGCTATTTCATATAGTGCCAATGACCGTTTCGGATAATAATACTACCCCTACAGAAACTAATGAGATCAACGGTATCGATTCAAGATTATATAAACTATTGACTACCGGAAacaatATGGTACCACCGCGTTGA
Protein Sequence
MVNETEDIQDDTVTTNSNTAPNELAIDNEQDVELLITDQATGISFSVNAQQYLVEQCLTDNQLLETLTPDPLLETDLLALDENALKTQLADIALTAGENISTSETDLNKEIISLDFDDSALRRSQRQQNFVNSIDSDEQLLTCVQSITDKPVPTRARATLPENYLNINKIDDDFGVFAKKLIAKSTQFGPLEGNISTKTFEVTNDKLALFIDKGDGNVDQLDISDENAANWMCYVRKASKYSDQNLVLMQQGDSLYYITTKPILPKQELMVGYGSSYAKAHKLEVLMPPSEEKDTWQCYECSQSFSTSQLLQKHLNVHDDSKDENSKPKKRSLKKKLVKKKIKCDILQCNECKECFVNPKHSILKDHMVTHGFTEGTIEEKFTVTRSSDQNPNKETNGADGAKQYFCTKCCLVFDNIEDYHSHFIVHTQENKKNYRCSICYKVFATRERIQKHMLVHGSDESKPYLCDKCSKRFLSTSALACHKKTHFFGRKVFECPICKESFVHVLLLKEHTNKHCIDGKFTCPHCNKIFTKYSIIRKHIRAFHCERKHTCTDCEKSFPTLDKLRMHSLRHSDHREFSCTECDKQFKRKDKLKEHARRMHSDERKNSNSNSMLIEQNVQNTRKFTPKVEPTDYHRFIYKCHTCMVGFKRRGMLVNHLAKRHPDISPDTVPELNLPILRTTRDYYCQYCDKVYKSSSKRKAHILKNHPGAELPISNRKIGTNENPDLPNATYSHAVGSITTHPQSCQWCHKQYASKAKLLQHQRKKHAKILLEMSMKQDDGKNEMLADQNVQTNQLEDIAVDTQCFKRDLKVSDIINEMVEFDDGRGQLFHIVPMTVSDNNTTPTETNEINGIDSRLYKLLTTGNNMVPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
-
80% Identity
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