Hpla007773.1
Basic Information
- Insect
- Hololepta plana
- Gene Symbol
- Prdm15
- Assembly
- GCA_963695495.1
- Location
- OY968836.1:8078189-8080830[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.7 5.6e+02 1.0 0.1 2 23 211 232 210 232 0.83 2 12 0.0034 0.29 11.4 0.4 3 23 241 262 240 262 0.96 3 12 0.00029 0.024 14.8 0.6 1 23 357 379 357 379 0.95 4 12 0.0016 0.14 12.4 4.5 1 20 383 402 383 404 0.95 5 12 3.8e-06 0.00032 20.6 1.6 1 23 411 434 411 434 0.97 6 12 0.082 6.9 7.0 4.3 1 19 438 456 438 458 0.95 7 12 0.026 2.2 8.6 5.1 1 23 469 491 469 491 0.97 8 12 4.2e-05 0.0035 17.4 1.7 1 23 505 527 505 527 0.97 9 12 3.5e-05 0.003 17.6 1.0 1 23 532 555 532 555 0.97 10 12 5.8e-05 0.0049 16.9 3.0 1 23 560 582 560 582 0.98 11 12 5.8e-05 0.0049 16.9 4.7 1 23 587 610 587 610 0.96 12 12 3.2e-05 0.0027 17.7 1.8 1 23 622 645 622 645 0.97
Sequence Information
- Coding Sequence
- ATGGCGGACAATCATAGGAGTAATAAAGCTGAATCTATGTTGATAGGTGAATGTGGAATATGTGGTACAAATCATGAAAGAAACAAGTGTGCTGTAATACAGATTAAGGGTAATATTGAGGATGAGAAAATTCCAAGCATGGCCAGACTAACATTGCCCAAAAAGTTTCGCATTGAAAGAATGTCTGAGGGCACTTTGTCTATAATAACCAATGAGTTTATAGAGAAGGGTACACAATTTGGACCATTGAAAGCTCAGAAGGTGTTCTCCTTGAATCCAGAGATATTGTTCCCATTGAAAATATTCACCaccaatgattatttcaatGAGTACTTTCTAGATCTAACTGATGAAGATAATTGTAATTGGCTGATGTTCATGAATGCTGCACAGAATTTGGAAGAGCAAAATGTCATCTGTTATCAAGAAAATTCTGAAATATATTATGTTACCATTAAGAACATTTCACCTGGGGAGTTTCTAAAGGTCTGGTATGCACCTTTCTATGGGAAAAAGatgaataaaatgaatttggAGTCATGTAATATAATAAGCAATGAGTTTGATGTACCCAAAGATATCAATGGACTGCttaaaaagcaacaaaatatTGTGATAAGAGATAATTGGATTTGCAAGTTTTGTGGCATAGTTGAAACTAATATAACAAAATTTGCTATTCACATTACTGACCATTACACAAAACAGTTAaggaaaatttgcgaaatctGTAAAGCCACATTCCTAACTAGAAAGGGTCTGAAGAAACATCTCAAGATAGTTCATGGACCAAAAGTGGTCGAGTTGGATAAAATAACTAAAATCAAACCGATTAAGAATCACGTGAAAGATTCATTAGTTGGTGGACCGTTACTAAATGAGGTCCTCACAGAAAGTTTAGATAATTCGAACATTTTGCTGCAACAGACTGATGTAACGCAATTCGACATTGGAAGTATTGACAATTTAAACATGCAGCTCGATTCGGAAAATTTTGGCGTCGACAATTTGTTAACAGACAAATATCTGGAACACTTTAATTTCGACATCGACGAAAGCCAAGAGCAATTCTTGTGCGACATTTGTTTGAAGAGTTTCTCCAAACTGAAACTGTTGGTACAACATCTCAAATGGCACACGGGCAAATACATGTGTCCACATTGTTTGACGATATTTTGTACGAACGAAAATTTGAAAGCGCACACCTGTTTCAATTTCGatcaaaagaaattcaaatgcGATCTGTGCGATCGCAAGTTTTCCTTAAACAAGTACTTAACTCGTCACATTCGAGCCATGCATAACAAACGGTTTCAATGCAAGAATTGTCTCAAATCGTTTTTCTCCAACAAAGAGATGAAGGAACACAATTGTGCGGCCGTACCATacgaggagaaagagaaacacaGTTGCCTGATATGTAACAAGGTCTTTTTGCGTGATCTCTACTTGAAGAGGCACATGAAACACCACGAGAACAGAACGCGGTGCTCCGTCGACGGCGAAAAGAAGTACATGTGCGAAATTTGCGCGAAAACGTTTACGAAAATCTCcagtttaaataaacatttcaagAATCACAAGAATCCGACTTACAAATGTACCATGTGCGACAAGAAATATTTCCGCAAGGACGTGCTAAACAATCACGTACAAGTGGCGCACAAAAAGGAGCAATTTCAATGCGACACGTGCAAAAAGGCGTTCCGAAGTatgaaatatttgaatattCACAAGAGACAACACGAGGACAAAAAGTATCATTGCACGGACTGCAACTTGTCGTTCGTCTATCGCTCGAACTTCACCAAACATACGAAGAACCTTCACAATCGATCACCGTCCAGCGCAAAAGTTACGCATTTTGTTTGTACGATTTGCCAGAAGGACGTCAAGTATAAAACGTCGCTGTTGAGGCACATGAAGAAGAATCATCCGGATTCGAAAGTAGAAGTCAAAACTATCGATAAGACGGTGTCGTTCGCCAACAATAAAGTGAAAACAACAGCGACGCTCGACAATGGAGTGATCGACTTTCCTGAGAATCTCATCAACATCATGGACGAGGATAATGTTGAAAACGATATGATAATGACCGCTAGCGTGCCGACGAAACAGATTGATGGTGTTAATTTCCATGCTGATGAGCAAAGCGTTTCTTGCAGTAAAGGCATCTGTTTGTCGGTGCCCGTGATGGACCAACAAATTACATTGCAAGAAGACGCTTACATAATGGACAACGGTACGATTGTACAGCCATTGGACCAAAGTAATGTGATTTTGTATGTCTTAGAGACAAAAGGATGA
- Protein Sequence
- MADNHRSNKAESMLIGECGICGTNHERNKCAVIQIKGNIEDEKIPSMARLTLPKKFRIERMSEGTLSIITNEFIEKGTQFGPLKAQKVFSLNPEILFPLKIFTTNDYFNEYFLDLTDEDNCNWLMFMNAAQNLEEQNVICYQENSEIYYVTIKNISPGEFLKVWYAPFYGKKMNKMNLESCNIISNEFDVPKDINGLLKKQQNIVIRDNWICKFCGIVETNITKFAIHITDHYTKQLRKICEICKATFLTRKGLKKHLKIVHGPKVVELDKITKIKPIKNHVKDSLVGGPLLNEVLTESLDNSNILLQQTDVTQFDIGSIDNLNMQLDSENFGVDNLLTDKYLEHFNFDIDESQEQFLCDICLKSFSKLKLLVQHLKWHTGKYMCPHCLTIFCTNENLKAHTCFNFDQKKFKCDLCDRKFSLNKYLTRHIRAMHNKRFQCKNCLKSFFSNKEMKEHNCAAVPYEEKEKHSCLICNKVFLRDLYLKRHMKHHENRTRCSVDGEKKYMCEICAKTFTKISSLNKHFKNHKNPTYKCTMCDKKYFRKDVLNNHVQVAHKKEQFQCDTCKKAFRSMKYLNIHKRQHEDKKYHCTDCNLSFVYRSNFTKHTKNLHNRSPSSAKVTHFVCTICQKDVKYKTSLLRHMKKNHPDSKVEVKTIDKTVSFANNKVKTTATLDNGVIDFPENLINIMDEDNVENDMIMTASVPTKQIDGVNFHADEQSVSCSKGICLSVPVMDQQITLQEDAYIMDNGTIVQPLDQSNVILYVLETKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -