Hpla010228.1
Basic Information
- Insect
- Hololepta plana
- Gene Symbol
- ZIPIC
- Assembly
- GCA_963695495.1
- Location
- OY968839.1:3009569-3012258[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5 4.2e+02 1.4 0.7 1 23 499 522 499 522 0.89 2 13 8.6e-05 0.0073 16.4 0.8 1 23 528 550 528 550 0.98 3 13 0.00015 0.012 15.7 1.0 2 23 553 574 552 574 0.97 4 13 0.0037 0.31 11.3 1.8 1 23 580 602 580 602 0.97 5 13 2.5e-06 0.00021 21.2 3.1 2 23 609 630 608 631 0.95 6 13 1.6 1.4e+02 2.9 1.8 5 23 644 662 643 662 0.95 7 13 0.00086 0.072 13.3 2.5 3 23 669 690 668 690 0.97 8 13 0.026 2.2 8.6 0.1 2 23 706 726 705 726 0.95 9 13 4.6e-05 0.0039 17.2 1.6 1 20 732 751 732 754 0.92 10 13 5.7e-05 0.0048 17.0 0.2 1 23 762 784 762 784 0.99 11 13 0.00032 0.027 14.6 3.2 1 23 790 812 790 812 0.98 12 13 7.1e-07 6e-05 23.0 3.3 1 23 818 840 818 840 0.99 13 13 0.00013 0.011 15.8 5.1 1 23 846 868 846 869 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTTTTAGACACCAAACAGGACATAGTTGTTATGCCAAAAGATCAAGAGGCTGaatcaaaattaatagaaataaatgatgatgaggatgaagaTTATGAGAAGGATGTTATACCTAAAGAAGAGGTGGAAGTTATTGGCAATAAAGAAGCGGGCGTGGGAACAGAACAAGATTTAGAAGTCTATCACATTGAGGATAAATGTACAACAgacgaggaaaataaaataattaacgataatgaCTTTGATCAAGAACATCACAGTCAACATTTTAATAAGGAAACGACAGAATTAAGTCAAACCAATAGTCAACACTGTAGTAACGAAATATTTGTTCAAGAGAGTGATAATATTTTACCAGAATCAAGTTGTATCAACAGTAATCAAGTATTTTATCAAGCGCAGACTGCGACTCAATGTTTCAATCACGACGAGAAGAGTTTTAACGAGAACACTACCCGAAATGATGAACCGTACGAAATCAAAGACGACAACAATGACTGTTTCacaaatttcaattccatCGTTAATGGCAGCATGAATATATTTAACGTCTCTCCGAACATGGTTCACATGGGCACGGATTCAGCGACTAAAGCATGCCAGACGACTAGTACCATGAACGAACCGATCCAAGGCAATTGCACGCAGTATGATGTAGCCGATGATGATGTGAAAGACGTTAATTTCATCGAGATGGACGGCATGAAATTGGTGCTGGCCAACGATTTCATGGCCAATCAAGTAATATCGCAGGTCGACGATTACGAATCTATCGATAGATCGAGGATATTGATGACAATCGGCGGTATGGATGGCatagataataaaaataatacgttGATGGACCACGATCCACTCGATACGGAATCCAATGCGCCCGATAGTATTTTGGCTACCGAGGACGAAGATCTATTGCTTAGAGATGACGAATTGATAACCGGCGATACTCTATCGACGGAGAGCGCGAATATTAGAACGAACGAAAGGATGCCGGCCCGCGGCGAATTGTCCGGACAAGAGGAGAGCAACGAGTGTTCGGACGACATGATTTGGTGTAAGATTCATCGGGACAGTTCACGTGAAGCGTGGGAGCAATTGGAACAGTCGAGTAACGGAAACGCTCTGCCGCCGATGAATCCAATAGAGCAAAGCGATTTCAATCAGGAACAAATGAATTTCGGGCAACAGGCGTCAATTTCCGAAAATTACGCCGGCGAGAATGCAATAAACGGAATTGATATAGCCAATGGGCAAGATGCAATGCTAAATGATTATGCGTCGGACGTGAGAAAGTCGGAAATTGCGGAAACGGGAATGGCCACGAACAAGAAGAttgtttttgtaaaacaaacgaaaaccCTAACCGAAAGGCGTAttaagaaagaagagaaagagtcGAATTTCGAAATGTTTTCGAATGAATGTAGCGTGAAAGAGGACAAAGACATAGATGTAACTGATACGAAGATACAACGGGAAAGTTGTCAATTTTTATGTACGACGTGCAGTACCTTTATGCCTTCTATGAAAGATTTAAAGGAGCACAAGCAAGAAGTACATAAAGAATGTTGTAAATATAAGTGCAATACGTGTGGCACGACATTTCAGTCGGAACCTATGTATACTAATCACTTGCAGATACATCCATTGGAATGTAAACTATGCGGAAAGTACTTTTATAGGAAACAAGGACTGGACCTCCATCTGAAACGACATTTGGGCATTAAACCGTTCAAATGCGACGTCTGTAATAAATCGTTTCTGACCAAGCAGAAGAGAGAGGAGCATCAGAACATTCATACCGGAGCGACCCCCATCAAGTGTAATTTGTGTGACGAAACATTCCGACGTTATTCTAATTTGATACAGCACCGAAATCGGCATCACTTAAAGCTCAAACGGAAACTGAGGGACTTCATGTGTCATTGCGGCGAGATCTTTCATTCGGTAAAAAAGTTAGCGTGGCACAAAGAGATACACGATTTGAAACCGAAAGCATGTACTTATTGTAGCGAGAAGTTCCTTCACATGTCCAGTTTAACTAGACACATGCGACGCGCCCATAACGAGAACTACATGCCGAACGACGAGCGTAACAAGGAAAACGTCGAATGCCCAGTATGCAAGGGCATCTATTTGAAATCCTCCCTGGAAACGCACATTCGGAGTCACAGCGGCGAAAGGCCGTACAATTGCCTAGTTTGCAACAAATCGTTCACGACCAAATGGAACCTGAAGTTACACAAGTGGACGCACGCCGCGCGAACCTCGAAACCGTTTAAATGCGATCAGTGCAATGGTGCTTTTATAAGGGAGAGCGATTACGTCGCTCACATGAATTCGCATCGAAGCGTTAAACCGTACACGTGCAATTATTGCGGCGCGCAATTCATACGGAAGAACAATTGTCAGCGGCACGTGCGGGAgcacgaaaaggaaaaaacttACGTGTGCGAGGTGTGCAATAAGGAGTTTCATCGTTCGTACTACTTGAAAGATCACATGCGAACGCATACGGGAATTCGACCGTATTCGTGTTCGATTTGCGGCAAAACGTCTACAACCAAATCGAATCACAACAAACACGTGCGGATTCATCATGCACGCGAGCCCATTAGTACTgagaattaa
- Protein Sequence
- MEVLDTKQDIVVMPKDQEAESKLIEINDDEDEDYEKDVIPKEEVEVIGNKEAGVGTEQDLEVYHIEDKCTTDEENKIINDNDFDQEHHSQHFNKETTELSQTNSQHCSNEIFVQESDNILPESSCINSNQVFYQAQTATQCFNHDEKSFNENTTRNDEPYEIKDDNNDCFTNFNSIVNGSMNIFNVSPNMVHMGTDSATKACQTTSTMNEPIQGNCTQYDVADDDVKDVNFIEMDGMKLVLANDFMANQVISQVDDYESIDRSRILMTIGGMDGIDNKNNTLMDHDPLDTESNAPDSILATEDEDLLLRDDELITGDTLSTESANIRTNERMPARGELSGQEESNECSDDMIWCKIHRDSSREAWEQLEQSSNGNALPPMNPIEQSDFNQEQMNFGQQASISENYAGENAINGIDIANGQDAMLNDYASDVRKSEIAETGMATNKKIVFVKQTKTLTERRIKKEEKESNFEMFSNECSVKEDKDIDVTDTKIQRESCQFLCTTCSTFMPSMKDLKEHKQEVHKECCKYKCNTCGTTFQSEPMYTNHLQIHPLECKLCGKYFYRKQGLDLHLKRHLGIKPFKCDVCNKSFLTKQKREEHQNIHTGATPIKCNLCDETFRRYSNLIQHRNRHHLKLKRKLRDFMCHCGEIFHSVKKLAWHKEIHDLKPKACTYCSEKFLHMSSLTRHMRRAHNENYMPNDERNKENVECPVCKGIYLKSSLETHIRSHSGERPYNCLVCNKSFTTKWNLKLHKWTHAARTSKPFKCDQCNGAFIRESDYVAHMNSHRSVKPYTCNYCGAQFIRKNNCQRHVREHEKEKTYVCEVCNKEFHRSYYLKDHMRTHTGIRPYSCSICGKTSTTKSNHNKHVRIHHAREPISTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -