Hpla010977.1
Basic Information
- Insect
- Hololepta plana
- Gene Symbol
- -
- Assembly
- GCA_963695495.1
- Location
- OY968840.1:3141584-3150749[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0095 0.8 10.0 4.2 1 20 11 30 11 32 0.95 2 23 0.0029 0.25 11.6 2.7 1 20 83 102 83 104 0.95 3 23 0.0026 0.21 11.8 2.6 1 20 112 131 112 133 0.94 4 23 0.016 1.3 9.3 0.2 3 20 140 157 140 159 0.95 5 23 0.00058 0.049 13.8 2.3 3 23 168 189 167 189 0.93 6 23 2.9e-05 0.0024 17.9 1.3 1 21 246 266 246 267 0.95 7 23 0.65 55 4.2 2.0 3 22 277 296 275 296 0.95 8 23 3.4e-05 0.0029 17.7 0.3 3 22 634 653 632 653 0.95 9 23 3.6 3.1e+02 1.8 4.8 1 21 661 681 661 682 0.95 10 23 2.6 2.2e+02 2.3 0.4 5 21 719 735 717 736 0.91 11 23 0.031 2.6 8.3 6.3 1 19 744 762 744 764 0.96 12 23 0.052 4.4 7.6 0.8 5 21 820 836 819 837 0.94 13 23 0.00024 0.02 15.0 0.7 1 20 845 864 845 864 0.97 14 23 6.4e-05 0.0054 16.8 0.6 3 21 933 951 932 952 0.97 15 23 0.0074 0.63 10.3 4.0 1 21 960 980 960 981 0.95 16 23 8.6e-05 0.0072 16.4 0.2 1 21 1004 1024 1004 1025 0.94 17 23 0.1 8.6 6.7 5.3 1 19 1033 1051 1033 1053 0.95 18 23 0.0029 0.25 11.6 0.7 2 21 1094 1113 1093 1114 0.95 19 23 6.7e-05 0.0057 16.7 3.9 1 22 1122 1143 1122 1143 0.97 20 23 3.3e-06 0.00028 20.8 0.6 1 21 1165 1185 1165 1186 0.96 21 23 0.0039 0.33 11.2 5.4 1 20 1194 1213 1194 1215 0.95 22 23 0.019 1.6 9.0 2.3 1 21 1239 1259 1239 1260 0.95 23 23 0.00034 0.028 14.5 2.1 1 22 1268 1289 1268 1289 0.95
Sequence Information
- Coding Sequence
- ATGCCGCGTAAACCGCAGAACGGCGCGCGGCACAAGTGCACGCGATGCGACAAGAAGTACTTGCGGAAGCAGCACTTACGCAGACACATCGAGTACGAGTGCGTTAACGGGCCGTTGTTCCATTGCCCGCTCTACGAATCGCAACCGCACGACCGTCTGCTGGAaatcgacgacggcgacgagacCGTCGTCGAGCGGATCCGCCAGGGGAACCGCGCGATCGCCGCTTACTATCCGGCGAAGAAGTTCAAGTGCTTCCGTTGCACGAAGTCCTACACGTTAGAGAAGAACCTGAAGCGGCACCTCACTTACGAGTGCCTCTACGGCCCGCGTTACAATTGCCAGTATTGCGCGAAGAAGTTCAACTATCAGTTCTTGTTGCGTAAACATTACGAGAAATATGCGATCGGCTTGGGGTGTAACAGGTGCGGCAAGCGGTTTCAATTGCCAGGCAGCTACAAGCGGCACGTGTTGGGCTGCCTCAAGATACGCACGCTGCTTTGCCCGCGGTGTCCGTACACGACGTCGCGCAGGGACAACTTGCGCCGACACCTGGACCACAAGCACGACATCAAAGTGAAACTGGACGTGCAGCGCATCGTGCTGAAGAACGAGTGGACGCAAtcggcgccgccgccgccgccgccaccgtcGACGGCCACTAATTACGGTCGGTGCGACGTCGTCGATCGACTGATCGTGCGCAAAGTCGAGTCGACGGCGCGGAAGGAGCGGCACGAGTGCGTCATTTGCGGCAAGACGTACGCGCACCGCACGAACCTGCTGCGGCACACGCGGTACGAGTGCAACAAGGAGCCGCGCTTCGGTTGCCGCAATTGCGCGTACCGCACGTACTACAATTTCCATCTGAAAAATCATTTGCGCACGTGCAATAAGACGAGTGTCGAACAGTTGGAGCTaacgaagacgacgaggacgacgatgcACGTGATCTGCAAAAACTGCACCCGGATGTGGACGACGAAACAAGCGGCGAATAGAAACAATCAGTGCCGGTGCCACGAACTGGTCGTGAATCAAGAAAATTTAAATCCGCAGGATACGTCCGCGTCTGCGAACGACGCGCCGAACCCGAATAAGAAACGCGGGCGACAAAGATCGAAGAAACAGAACCTGCTTTGCGACCGGTGCTTTCAGTGGTACTCGACGGCCGCGATCCTCAAGGTGCACAGAAAACTAAACTGCAAGTCGCCCGCTCAAGCGAAAAAGACCAAGCAAAATCGCAAATCCGTGGAGGAAGTACAAGAGGCGAAAGAACTTGGATCGGCCGTTCGTCTGCAGCACGTGCTATCGCCGGTACGCGGCGAAACGCTCGCTGATGCGGCACCTGCGGAATCAATGCACGCCGATCGCTTACTGAACTGCAAACGACGcctctaCGATTTGTACACGTTCCCCGTGAAATCGGTGCACGCGTTGCAGACGTTGGAGAAATCGTTGGCGTGTCCGATAAACTTCCGGAAATACGTGAGTATCGCCATCGCCGAACGACGACGTCATCGTCGGTCATATTTCGCCGTCGGTTTCCAGGTCGAACTGATGAAACGCTCGCTGAAATCGTCGCAACTGCCCAGCGACAACGTGGCCGTCAAACTGCTCGACCAACTGATCGATCGCAACGTCCTCTGGCACTACTGCTGGGAGACGTCGAAAGAGCCGACGGCCGACGGCAAACTGTCGTTCAACGCGCTCCACCAGATCAATCGTCTGTTCTATACGATCGTGCGAAGCGGCAGCCGACGGTTCACGCTCGCCAATCACGAGGACTTCTTCAGGTGGTACCTGGCGATGCCGACGAGCAAACGGACGACGCGCAGCGACAATCGGACGAAGAGAAAACGCTCTTGCGTACTTACAAACACGAGGAAACCGTTTGGTTGCGGATCGTGCGGTAAAGCGTACACGACGAGGGGCAACTTGAATCGGCACCGTCGGACCGAGTGCGGCCGGCCGAAGAAATTCCGCTGCGTATTTTGCACGTTCGAGGTCAACCGGCGTCAGCACTTCCACAAGCACAAGCGGATAAGATTGCCGATTGATGATTGCAAGAAGCTGGCGCACGTTTGTCCATTGATTTGTTTTGCCGTAGGgcaatcgtcgtcgatcgccgcgaaaacgaaaaagttcaCGTGCGGCTGCGGTCGCTCGTACCTCGCGAAGTACAGCTTGAACAGGCACAAGCGGTACGAGTGCGGCGTGACGCCGCAGTTTCAATGCTGCAAGTGTAGGCGATCGTTCGCCTATAAACACTATTTGAAACAGCACGAGACGCTGTGCAAGGGCAAAAGGAAGTTGCTAATACAGATTAGTAACGTTTCCGGCTTGATTTTCCTCGATCACCTCCACCCGGAATCCGGCAATTGGCCGCAAGaccCTTACGAGCCGAACAAACGCGGCCGCCGCTCCAAGTATCTGCGGGTGCGCAAATACTTTTGCCAATGCGGCCGCTCCTACACGGCCGAGTACTGCTTGAAGCGGCACATCCGCTACGAGTGCGGTATCGTGCCGCAGTTTCAGTGCACGATGTGCGAACGCCGGTTCGCCTACAGGAACTACTTGAATCGGCACATACCGATTTGCAAAGGCGTGAAACAGAACGGATACCGACGCCGTCGACAGCAGCGCCGCGATGCCGATGCGCTTCGCGCGTACAAAATGCAGCGTTACTACGCGCACCGTTACGTCAAATCGTCGGAGGAGATCCACGAGttggaggacgacgacgacgaggaggaggacgtCAAAGAGTTCGACGGCGCCGCGTCGATACACGGTTGTCCGACGTGCGGGAAACGCTACCGATTGAAATCGAGCCTGTCGCGCCATCAGCGCAACGAGTGCAACGTCGAGCCGAAGTTCGAGTGCGCGCTGTGCAAGCGGAAGTTCGCGCACAAGTTCAACATGAAGCATCACGTGAAGAAGTGCAAACGGTTCCATTGTTTCTATCGCAGCGGCAGGTACGCGTATCGCAAGACGTTGGACGGGCGCTTCGCCTGCGTGACGTGCGGTAAGTCGTACACGATCCGGGGGAACCTGACGCGGCACATCAAGAACGAGTGCAACGTCGAGCCGAAGTACGTGTGCATGTTTTGCCACCACCGATTCGCCCACAAGCACGACATGCGGCGCCACTCGATGTTCTCGTGCAAGAAAGGCTTCCGGCTGAAGAAGTTGTACAACGAGCCGCAAGAGAGAtcctttcgcaattttcccAATCCGGGATGCCTGCCGAAATGGAAGAGACGCGAGCACGGTCTCACGTGTCGCAAATGTTTGAAAAGTTTCAGCCTGCGGAACAGCCTCCTGGTGCACATGCGTTACTATTGTAACGTCGAGCGGCGCTACCAGTGCCACGCGTGCCTGAAGAAGTTCAGCCGCCGCAACAATCTCACCAAGCATCAGAGAAAGTACCGTCGCCAGAGGTACGACAATCCAAGCGGCGCGAACGGCAGCGGTGGATCGATGGAGACTTACCGGTGTAGCGATTGCGACAAGAGCTACTCGAGCATGCCGAACCTGCGCCGGCATCAGAAGCTCTATTGCAACAAGGAGCCGTTGTACCAGTGCAACGCGTGCCACCATAAGTTCTATCAAAAGTCCAATTTGTACAAACATCTCTTCCGGTACAAGGCGCTTATTAAGAAGTACAACAACAATGTGCAGTGGTCGCGTAATCCGAATCTGCGCGAGATTTACACGTGTCAGCGGTGCCGGAAGAATTACGTCTCGAAGACCGGCCTCTACAAGCACACGAAGTATTATTGCGGCAAAGAGCCGAAGTTCAAGTGCGAGGGCTGCTTCCATCGGTTCTACCAAAAGGCCAATCTCAATCAGCACTTGTCCACGTGCAAATCGTTCCGGAGCTTCCTCTTCTGA
- Protein Sequence
- MPRKPQNGARHKCTRCDKKYLRKQHLRRHIEYECVNGPLFHCPLYESQPHDRLLEIDDGDETVVERIRQGNRAIAAYYPAKKFKCFRCTKSYTLEKNLKRHLTYECLYGPRYNCQYCAKKFNYQFLLRKHYEKYAIGLGCNRCGKRFQLPGSYKRHVLGCLKIRTLLCPRCPYTTSRRDNLRRHLDHKHDIKVKLDVQRIVLKNEWTQSAPPPPPPPSTATNYGRCDVVDRLIVRKVESTARKERHECVICGKTYAHRTNLLRHTRYECNKEPRFGCRNCAYRTYYNFHLKNHLRTCNKTSVEQLELTKTTRTTMHVICKNCTRMWTTKQAANRNNQCRCHELVVNQENLNPQDTSASANDAPNPNKKRGRQRSKKQNLLCDRCFQWYSTAAILKVHRKLNCKSPAQAKKTKQNRKSVEEVQEAKELGSAVRLQHVLSPVRGETLADAAPAESMHADRLLNCKRRLYDLYTFPVKSVHALQTLEKSLACPINFRKYVSIAIAERRRHRRSYFAVGFQVELMKRSLKSSQLPSDNVAVKLLDQLIDRNVLWHYCWETSKEPTADGKLSFNALHQINRLFYTIVRSGSRRFTLANHEDFFRWYLAMPTSKRTTRSDNRTKRKRSCVLTNTRKPFGCGSCGKAYTTRGNLNRHRRTECGRPKKFRCVFCTFEVNRRQHFHKHKRIRLPIDDCKKLAHVCPLICFAVGQSSSIAAKTKKFTCGCGRSYLAKYSLNRHKRYECGVTPQFQCCKCRRSFAYKHYLKQHETLCKGKRKLLIQISNVSGLIFLDHLHPESGNWPQDPYEPNKRGRRSKYLRVRKYFCQCGRSYTAEYCLKRHIRYECGIVPQFQCTMCERRFAYRNYLNRHIPICKGVKQNGYRRRRQQRRDADALRAYKMQRYYAHRYVKSSEEIHELEDDDDEEEDVKEFDGAASIHGCPTCGKRYRLKSSLSRHQRNECNVEPKFECALCKRKFAHKFNMKHHVKKCKRFHCFYRSGRYAYRKTLDGRFACVTCGKSYTIRGNLTRHIKNECNVEPKYVCMFCHHRFAHKHDMRRHSMFSCKKGFRLKKLYNEPQERSFRNFPNPGCLPKWKRREHGLTCRKCLKSFSLRNSLLVHMRYYCNVERRYQCHACLKKFSRRNNLTKHQRKYRRQRYDNPSGANGSGGSMETYRCSDCDKSYSSMPNLRRHQKLYCNKEPLYQCNACHHKFYQKSNLYKHLFRYKALIKKYNNNVQWSRNPNLREIYTCQRCRKNYVSKTGLYKHTKYYCGKEPKFKCEGCFHRFYQKANLNQHLSTCKSFRSFLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -