Hpla007889.1
Basic Information
- Insect
- Hololepta plana
- Gene Symbol
- salm
- Assembly
- GCA_963695495.1
- Location
- OY968836.1:9431908-9439057[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.47 39 4.7 0.1 3 20 2 19 1 21 0.92 2 10 3.1e-06 0.00026 20.9 0.9 1 23 331 353 331 353 0.98 3 10 4.2e-06 0.00036 20.5 1.9 1 23 359 381 359 381 0.98 4 10 0.039 3.3 8.1 3.8 2 23 703 724 702 724 0.98 5 10 2.7e-08 2.2e-06 27.4 0.6 1 23 730 752 730 752 0.97 6 10 5.4e-05 0.0046 17.0 1.7 1 23 762 784 762 784 0.98 7 10 0.0056 0.48 10.7 2.4 2 23 1059 1080 1058 1080 0.97 8 10 0.022 1.9 8.8 1.0 1 13 1086 1098 1086 1100 0.92 9 10 8.6e-07 7.2e-05 22.7 4.0 3 23 1292 1312 1290 1312 0.96 10 10 1.2e-07 1e-05 25.4 0.9 1 23 1318 1340 1318 1340 0.98
Sequence Information
- Coding Sequence
- ATGTGTCCTAGGTGTCAAGAACAGTTCACCGATGTGCAAGAGTTTCTCACGCATAAAGAGGAGTGCGCACGTAAAGCGAAGAAGCACGAGGAACCGGCTCATTCCGACCCGGAGGACATGGTAGTGTCCGAAGACGACGACTACGACGAGGACAGCGGCagcgtcggcggcggcggcggcaagcGATTGGAACGGATGCGACGGCATCGGCAGGACGCggcgaataacaacaacagcgtcGACGACAATTCGCCGGAAGAGAACGAGAACAGCGGGCAACGCATGGATTTTCCGTTCCCCGTGGCCGGCTCGGCTAGCCACGTGACGCTGGAAGCGTTGCAAAACACGAAAGTCGCCGTGGCGCAGTTTGCCGCGACGGCGATGGCGAACAACACCGACAACGAGACGGCCCTGCAAGAGTTGGCCGTGCTGCAATCGACGTTGTTCACGTTGCAGCACCAGCAAGTGCTCCAGTTGCAATTGATCAATCAACTGCAGCAGCAATTGTCGATAAACCGATCGAAAACGAGCAGTCCGGTGTCGCCGAATCCGGAAAACGACGCGGAACCGCTTCAGCCGGAGACGCCGCCACCCCAACAAGCGATGTCGCGCGAACCGACGCCCGACGTCCCAATCGTGCCGTTACCGCCGCCACCGCCCACGTCGCAGCCGTTGCCGCAAACGCGAACGCCGCCCGGACCGTTGCCGGAAGTGACCAGTGTGCCGTCGTGCTTACCGCCGCAAATCCAACCGCCGCTATGTTCGATATCGTCGTCGCTGGCAGAGACAATTATCACGCACAGTAACGATCCGCCGTCTTTGGACGAACCGAACACGTTGGAGATGTTGCAGAAACGCGCGCAAGAAGTGTTAGATAACGCGAGTCAAGGCCTCCTGGCCACGAACTTAGCGGACGAATTGGCCTTTCGCAAGTCGAAAGGTTCGATGTCGCCGTACGATTCCAAAGGTAGGAACGAGCCGTTCTTCAAGCACCGCTGCCGCTACTGCGGCAAAGTGTTCGGCTCCGATTCCGCACTGCAAATACATATCCGATCTCACACCGGCGAGCGGCCGTACAAGTGCAACGTGTGCGGCAGCAGGTTTACGACGAAAGGTAACTTGAAGGTCCACTTTCAGAGGCACAGCGCCAAATTTCCGCATATCAAAATGAACCCGAACCCCGTGCCGGAACATTTAGACAAGTATCATCCGCCGCTGTTGGCCCAACTGGGCCAGCAGCAGCCGGCGTTGTCGCCGGGCGGGCCGCCGCCCGGCCATCCGCCGCACATCGGCTTCCCCGGCGGCCACCATTCGTTCCCGCCGACGACGATACCGTTGTACAGGCCGCCggggccgccgccgccgccgcccccgCCCGAAATCGTCAACAATCGAttgccgccgtcgccgcaTCGGCCGCCCGAACCGCGCATCTTCCCGCCGCATCCGTTCGCGTTGATGAAGCGCGAGGAACAGGAGGTGCCGGAGAATTTGAGCAAAATGCCGCGTTCGTCGCCCGCGACGCCCGTGCCCCACGAGCAGCGGATTAAGACGGAAGTGAACGAGGAGAAGCGCGACGCGCTCGGCGACGAGGCGAAAGTGTTGGCGTTGAACGTGCCGCAGATCACGCCCAAGCAGGAGATGGACACCGACAACGAGCCGGAACAGGAGCCGGAACGCTTCCCGTCGCCGAACCCGTACGACGAGTGCGAGAGCATCGACAGTAAGTACAGCAACGAGGACTTGCGCAGTCCGATGGACCATCAGTCGGAGAACATGCAGGACGAGCCGGAGAATTTGTCGAACAAGAGCAATTCGGCGACCGGGCCGCTCACGATATCGACCGGGCAACGTTTGCCGGCGAACTTTCCATTCGCGCACGCCTCGTCGCCGCCGAGCAGCGCCTCGTCCGGCAGCCTCGGTCCGTTTCCGTCGACGCCGCTCCAAGATCCGGCCCGCGATCCGGCCATTTACACGAACCTCCTGCCGCGGCCGGGCAGCAACGACAACTCGTGGGAGAGTCTGATCGAGGTGACGAAAACGTCCGAGACGAGTAAACTCCAGCAGCTGGTCGACAACATCGAGCACAAACTGTCCGATCCGAATCAGTGCGTCATCTGCCATCGCGTGCTGTCGTGCAAGAGCGCGCTGCAAATGCACTATCGCACGCACACCGGCGAGCGGCCGTTCAAGTGCAAGATATGCGGCCGCGCGTTCACCACGAAGGGCAACCTGAAGACGCACATGGGCGTGCACAGGGCGAAACCGCCGATGCGCGTGCTCCACCAGTGTCCGGTGTGTCACAAGAAGTTCGCGAACGCGCTCGTGCTGCAGCAGCACATCCGCTTGCACACGGGCGAGCCGACCGATCTGACGCCGGAGCAGATCCAAGCGGCGGAGGTGAAGGATTTCCCGTCGCCGGGCGGTTTCCCGCCGCTGCCGAACTCGATGAACCCGTTCATCGGGCAAGGCTTCCACGTGCCCGGCCTGTCGCCGTTGGGCCACGGCGGCGGGTTTCCGATCAACATGAAGCTGGGCGACGAGAGCAAATCCGAACAGGACTAcatggacgacgacgacgacgacgacgacgacatgaGCACGTCGGAGCCGCACTTGCAGCCGTACAACTCGTCGCTGATGGACctgcatcatcatcaccatcagaGCAACATGAACAACGCGATGCCATCGAATCTGTCCACGTCCGGTCTGAGCTGTTCGGCGGAGGACCTCTGCTCGAACCGCACCAGTCAGAACATGTCGCCGATGCAGAACGGCGAGAAGTCGCCGGCGCGATCCGGGATCACGAGTCCGGGCAGCTCGGATATCGTGCGATCGTCGCCGAACCAAATGTCCACACCCGTCCAGGTCCCGCGGCCGCCGTCCTCGCAGCAGCCCGGCAGTCCGACGCCGTCGGAATCGAATTCGCTCGGCGCGCTCGACCTGACGCCGAGGACCGCCCAGCCGCCGCTGTCGAGTCCCGGCCAGCCGGGCAACAACCCGGGGCCGCCGTCGCTCTTCCAATCGTTCGGCCTGTTGCCGCCCTCGCAAGCGGCGGCCGGCAGTCCGCTGATCTCGTCGGCGCTCTCGTCGCTCACCTCCTCCGTGCTCACGTCGACCGCTTTCAGTCCGTTGCGATTAGCCGTCGGGCCAGCAGTGAGAGGTAACACGACGTGCAATTTGTGTTTTAAAACGTTCGCTTGCAATTCGGCCTTAGAAATACATTATAGGAGCCACACGAAGGAGCGGCCGTTCAAATGCACCATCTGCGATCGGGGCTTCTCGACGAAGacTGGCGAAGAGTGCATGTGTGGTCAGAGGCGTATCCAGGATGAAGCGGAGCTGCCGTGGGTgcataataatagaaaaccGCCCAGGTCGCGACGCAAGAAAATCCCATCGTCAGCAGCATTGCCGATGAGCCCTGGATACGCCACTGGCATGAATTGGCCCGCGCTAGCGGGCAACATGAAGCAACACATGCTGACGCACAAGATACGCGACATGCCGCAACACATGTTCGACAAGCCGCCGCCATCGGAAGAcagccaacaacaacagcagcagcaacaacatctgcagcaacagaaacaacaacaaccgcctCCGCCGccacaacagcaacaattacCGCCAtcgcaacagcaacaacagcagcaaccgccgccgccacttCCGTCGATTGCCCAGCAGTTGCACAGTTCGCGAGACTCGACGCCGCATCACGAGATCAGCAACGATCAGTCGCCCTCGCAGATGTTGCCATCGCTCCATGAGCCCAACAACGAGCCGACGGTGAAGAGGGCGCCCAGCGAAAGCGAACTGCCCTTACCGAAACGACCGCCGAGCTTGCAGGCCAATAAACACTTATGCCACGTATGTAATAAGAACTTCTCGTCCAGTTCGGCCTTGCAGATACACATGCGAACCCACACGGGGGACAAACCATTCAGATGCACCGTCTGTCAGAAGGCATTCACCACGAAAGGAAACCTTAAGGTTCACATGGGCACACATATGTGGAGCAACGGGGCATCGCGACGCGGCCGACGCATGTCCCTAGACCTGCCGCCCATTCCCATGACGCCCAAGGATTCCGAATTTCTGCAGCGGAGGCCCGACCTCTTCTACCCGTACCTCCCGGCTCCGTTCCTTAATGGCATGCAACAGAAGTTGAACGAGATCTCAGTGGTACAAGCGCCGCCGAACGGTCTCGGTAATCCGGGCAAGTACGGCGGCTTATTGGGCTTCGGCTATCCGCCGCCGGAGACGTTGCGCTCGCAGGCCGACGACTCGCCGGAGCGGCCGGCGTCGCGTCCGCCAAGTCGCGAACCGGACCGGATATGGGACATACACTTCGATCGGAAGTCGAGCGGCGACGCGCCGTCGAGGGACGAACTGATGCCGCCCGGACGCGAAGGCCTAGCGGCCTAA
- Protein Sequence
- MCPRCQEQFTDVQEFLTHKEECARKAKKHEEPAHSDPEDMVVSEDDDYDEDSGSVGGGGGKRLERMRRHRQDAANNNNSVDDNSPEENENSGQRMDFPFPVAGSASHVTLEALQNTKVAVAQFAATAMANNTDNETALQELAVLQSTLFTLQHQQVLQLQLINQLQQQLSINRSKTSSPVSPNPENDAEPLQPETPPPQQAMSREPTPDVPIVPLPPPPPTSQPLPQTRTPPGPLPEVTSVPSCLPPQIQPPLCSISSSLAETIITHSNDPPSLDEPNTLEMLQKRAQEVLDNASQGLLATNLADELAFRKSKGSMSPYDSKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPYKCNVCGSRFTTKGNLKVHFQRHSAKFPHIKMNPNPVPEHLDKYHPPLLAQLGQQQPALSPGGPPPGHPPHIGFPGGHHSFPPTTIPLYRPPGPPPPPPPPEIVNNRLPPSPHRPPEPRIFPPHPFALMKREEQEVPENLSKMPRSSPATPVPHEQRIKTEVNEEKRDALGDEAKVLALNVPQITPKQEMDTDNEPEQEPERFPSPNPYDECESIDSKYSNEDLRSPMDHQSENMQDEPENLSNKSNSATGPLTISTGQRLPANFPFAHASSPPSSASSGSLGPFPSTPLQDPARDPAIYTNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQCVICHRVLSCKSALQMHYRTHTGERPFKCKICGRAFTTKGNLKTHMGVHRAKPPMRVLHQCPVCHKKFANALVLQQHIRLHTGEPTDLTPEQIQAAEVKDFPSPGGFPPLPNSMNPFIGQGFHVPGLSPLGHGGGFPINMKLGDESKSEQDYMDDDDDDDDDMSTSEPHLQPYNSSLMDLHHHHHQSNMNNAMPSNLSTSGLSCSAEDLCSNRTSQNMSPMQNGEKSPARSGITSPGSSDIVRSSPNQMSTPVQVPRPPSSQQPGSPTPSESNSLGALDLTPRTAQPPLSSPGQPGNNPGPPSLFQSFGLLPPSQAAAGSPLISSALSSLTSSVLTSTAFSPLRLAVGPAVRGNTTCNLCFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKTGEECMCGQRRIQDEAELPWVHNNRKPPRSRRKKIPSSAALPMSPGYATGMNWPALAGNMKQHMLTHKIRDMPQHMFDKPPPSEDSQQQQQQQQHLQQQKQQQPPPPPQQQQLPPSQQQQQQQPPPPLPSIAQQLHSSRDSTPHHEISNDQSPSQMLPSLHEPNNEPTVKRAPSESELPLPKRPPSLQANKHLCHVCNKNFSSSSALQIHMRTHTGDKPFRCTVCQKAFTTKGNLKVHMGTHMWSNGASRRGRRMSLDLPPIPMTPKDSEFLQRRPDLFYPYLPAPFLNGMQQKLNEISVVQAPPNGLGNPGKYGGLLGFGYPPPETLRSQADDSPERPASRPPSREPDRIWDIHFDRKSSGDAPSRDELMPPGREGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -