Basic Information

Insect: Hololepta plana
Gene Symbol: -
Assembly: GCA_963695495.1
Location: OY968837.1:5705913-5708894[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.5 5.5e+02 1.0 0.1 3 10 65 72 63 79 0.62

2 12 1.7e-05 0.0014 18.7 1.6 1 23 230 252 230 252 0.99

3 12 3.8e-05 0.0032 17.5 0.2 2 23 260 281 259 281 0.97

4 12 1.5e-06 0.00013 21.9 3.5 1 23 287 309 287 309 0.99

5 12 4.1e-05 0.0034 17.4 2.7 1 23 316 338 316 338 0.99

6 12 2e-05 0.0017 18.4 1.6 1 23 344 366 344 366 0.97

7 12 8.2e-06 0.00069 19.6 0.1 1 23 372 394 372 394 0.98

8 12 4.2e-07 3.5e-05 23.7 1.2 1 23 400 423 400 423 0.96

9 12 5.2e-06 0.00043 20.2 0.4 1 23 429 452 429 452 0.96

10 12 5.7e-06 0.00048 20.1 2.1 1 23 458 480 458 480 0.99

11 12 6.3e-05 0.0054 16.8 0.4 1 23 486 508 486 508 0.94

12 12 0.00031 0.026 14.7 0.1 1 21 514 534 514 538 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.5	5.5e+02	1.0	0.1	3	10	65	72	63	79	0.62
2	12	1.7e-05	0.0014	18.7	1.6	1	23	230	252	230	252	0.99
3	12	3.8e-05	0.0032	17.5	0.2	2	23	260	281	259	281	0.97
4	12	1.5e-06	0.00013	21.9	3.5	1	23	287	309	287	309	0.99
5	12	4.1e-05	0.0034	17.4	2.7	1	23	316	338	316	338	0.99
6	12	2e-05	0.0017	18.4	1.6	1	23	344	366	344	366	0.97
7	12	8.2e-06	0.00069	19.6	0.1	1	23	372	394	372	394	0.98
8	12	4.2e-07	3.5e-05	23.7	1.2	1	23	400	423	400	423	0.96
9	12	5.2e-06	0.00043	20.2	0.4	1	23	429	452	429	452	0.96
10	12	5.7e-06	0.00048	20.1	2.1	1	23	458	480	458	480	0.99
11	12	6.3e-05	0.0054	16.8	0.4	1	23	486	508	486	508	0.94
12	12	0.00031	0.026	14.7	0.1	1	21	514	534	514	538	0.92

Sequence Information

Coding Sequence: ATGTCCATAGTTGCAGCAAAGGACAGTCAGCTTTGTTTAATATGCAGTGGCAGAGTTGGGGTGTCAACAAGAACATCATTGCCAATATTTTCAAAAGAGACACAGACATGTTCAGAAAGGCCATTAACTACTATCATGGCAGATGTCCTAGGACAAGAAATCAAGGAAGATAGCATACATTCATATTTGATATGTAAAAAGTGCTTTAAACTGTTTGATGAAGTGGATGAATTGGAATTACGTATAGTTGAATTAAAAACTGAgatattaaacaattacaagAAATCAGTGCACAAAAGTAAAAATGGTGAATTAAATGAGGAACATCATAAAACATTTGTTCAAAAGGAATCAAATAAAGAGAATCGAATTCCTAAAAAAATTCTGGACATTCCATCATCTGATGATGAGAACATTCAAACTGAAAAACCTGGCCTGAACATGCTTGAGGATATTGAAATGGAATTGGTTAAAATTCATGgtggaaatgatgatgatgatgaaaagtCTGGAGAAGTTTTTAAGGATGATCCTGATGATGAATTGGAAGACTCTAATCAAACATTCCATGGTTTTCCAACTGGTGATGGTGATGCTGGTATGATGGAACATTCTTCAGATGAAGAATATCAGCCAGATTCATACATTTCAGAAAAAGGCTTTATGGAAAAGGGTTTAGAAGGCGACTTTCAATGTGAAGTATGCAATCGAATATTTAGTAATTTACGATTATTCCGCATACACAAAAGGATGCATTACCCACAAAACAAAGCTTGGACATGTGATATCTGCGGTCGAAAATATAGCTCTAAAAATCTACTTGATGAACACTTAAATGTACATAATGGCATACGACCATATGTTTGTCATGTTTGTAACAAGAGCTTTGCCTCCAAATATACATTTAAGGCACACGAGAAGACGCACGAATTTCGACCTAGACCCTTTCAGTGTTCACAGTGTACTAAGAGTTTCCTCAGTCAACAGAACTTGAACCAGCATGAAAGGACGCATTCTGGTTTAAAGGACTATCAGTGTCATTTATGTGATAAACAGTTTGGTTCGGCACATAATTTAGAAGTTCATTCGATCGTACACACCGGATATAAACCATATATATGCGGTACGTGTGGCAAGGCGTTTGCCAGAAAAGCCGAGATCAGGGATCACGAAAGGACTCACACCGGCGAACGACCGTATCAGTGTGAATTTTGCGGAGCCACATTCAGTCAACGATCGAATTTGCAATCGCATAAGAGAGCCACCCATTACGACGATAAGCGGTACATTTGCAACGTATGCGGCAAGGGGTTCAAGAGGCGAAGgCTTTTGGATTACCACATGAAAGCTGCACACACAGGCGAACGACCGTTTAAGTGCGACATTTGTGAGGCGACATTCGTATATCCCGAACATTTCAAGAAACATCGAAGGATCCACACGGGCGAGAAGCCGTTCCTATGCGAAGTTTGCGGCAAAGCTTTCAACAGTAGAGATAACAGGAATGCTCATAGATTCGTGCATTCGGATAAGAAACCCTACGAATGTTTAATATGCGGCACTGGGTTCATGAGGAAACCTTTGCTTTATCAGCACATGCAGGCACAGGGTCACTTGAACGATACGATTGTAGTGAATCAACCGCGTCTAACCACCGACGACGATCAAGTTATTACGgTGAATGCACGTGGTGAGATGGAAATAGTTGATGGCGATGTGAGCACGCTGGAACATATCGATCCGAATGAAGCGGCCGAATTACAAGACGATTCGAAATTGTACATAGCGGACTTTAAGAATCGCATGCTCCTCGATAAGAACGAAATGTTCAGTGATAATAAGAACTCTTTAATCGTCGGTGGCAACATGAACGAGGAGCATATGGAAGAAAACGAAGCCGTCGAGCACATTATTATCGATGGACCTCTTCAAtacgccgaagaagaagaggaggaggaagtcGAAGAAGTGGAAGGCATCGAACAGCAGCAGGACTTAAACACGAACGAATACGAGGGAATCAGCGAGGCTTTCGTTAATGGCGAAACACAAATCATACAAACGAAAGATGGCCCCATACAATTAGTCCAAGTGCGAATACCGAACGATAACGGCGAAGAGGAGAACGCGTGGATTAAGATTATACCTTAG
Protein Sequence: MSIVAAKDSQLCLICSGRVGVSTRTSLPIFSKETQTCSERPLTTIMADVLGQEIKEDSIHSYLICKKCFKLFDEVDELELRIVELKTEILNNYKKSVHKSKNGELNEEHHKTFVQKESNKENRIPKKILDIPSSDDENIQTEKPGLNMLEDIEMELVKIHGGNDDDDEKSGEVFKDDPDDELEDSNQTFHGFPTGDGDAGMMEHSSDEEYQPDSYISEKGFMEKGLEGDFQCEVCNRIFSNLRLFRIHKRMHYPQNKAWTCDICGRKYSSKNLLDEHLNVHNGIRPYVCHVCNKSFASKYTFKAHEKTHEFRPRPFQCSQCTKSFLSQQNLNQHERTHSGLKDYQCHLCDKQFGSAHNLEVHSIVHTGYKPYICGTCGKAFARKAEIRDHERTHTGERPYQCEFCGATFSQRSNLQSHKRATHYDDKRYICNVCGKGFKRRRLLDYHMKAAHTGERPFKCDICEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLICGTGFMRKPLLYQHMQAQGHLNDTIVVNQPRLTTDDDQVITVNARGEMEIVDGDVSTLEHIDPNEAAELQDDSKLYIADFKNRMLLDKNEMFSDNKNSLIVGGNMNEEHMEENEAVEHIIIDGPLQYAEEEEEEEVEEVEGIEQQQDLNTNEYEGISEAFVNGETQIIQTKDGPIQLVQVRIPNDNGEEENAWIKIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -