Hpla006851.1
Basic Information
- Insect
- Hololepta plana
- Gene Symbol
- su(Hw)
- Assembly
- GCA_963695495.1
- Location
- OY968835.1:14120402-14132853[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.1e-06 0.00068 19.6 2.4 1 23 548 571 548 571 0.96 2 13 0.025 2.1 8.6 1.1 2 23 609 631 608 631 0.93 3 13 0.00093 0.078 13.1 2.3 1 23 642 664 642 664 0.99 4 13 5.1e-05 0.0043 17.1 3.1 1 20 670 689 670 691 0.95 5 13 2.4e-07 2e-05 24.4 1.8 1 23 702 724 702 724 0.98 6 13 3.1e-06 0.00026 20.9 0.4 2 23 736 757 735 757 0.97 7 13 2e-06 0.00017 21.6 0.8 1 23 763 785 763 785 0.99 8 13 4.2e-05 0.0035 17.4 2.3 1 23 791 813 791 813 0.99 9 13 8.3e-05 0.007 16.5 2.0 1 23 819 841 819 841 0.94 10 13 1.5e-05 0.0012 18.8 2.6 1 23 847 870 847 870 0.96 11 13 1.4e-05 0.0012 18.9 0.2 2 23 877 898 876 898 0.97 12 13 5.2e-07 4.4e-05 23.4 0.9 1 23 904 926 904 926 0.99 13 13 7.1e-06 0.00059 19.8 3.1 2 23 933 955 932 955 0.94
Sequence Information
- Coding Sequence
- aTGGCGGgaaaggaggaggagaagaagtcGATCGAGTTGTTGTTGACGGATCGTCGATTGGCGGCGAGTGTCGATGGCGACGATCGGGCGGTCGTCATCGATATCGCGTTGGAGGAGgaggcgacggcggcggcggctgcGGTGGCGACGACGACCAAAGAGGAGATTGGCGTCGAGGATGGGGAGGGGGCGGAGGCGGTGACGACGAAGGTGCATTTCGTGGAGGCCGTCGGGGCGgtagacgacgacgacggggGGGAGGAGGAGCTGGAGACAAAGACGATTGAGGATATTTCACATAATAGATACGCCGAAACCTATCGCATCCAAACCATTGACGAGGTGAACAATCACCATAACGAcgacgcaacaacaacaatcaaacaacaagaagacgacaaaacaacaataacaacaacaatcgacgAATCACCATTaacgccaacaacaacaatcaacaCAATAATCAccacagcagcaacaacaacaacaaccgccaCCAGCAACAACAGCGACACCTACTACATAACAACGGacgatcaacaacaacaacatcaactcgtcgaggaggaggaggtggaGGGGGAGGAGGCGGGCGGCGAAGAGGTGGTGATCCAAGAGGAAGACGACGGGGAGGAGGGGGAGGAGTTGATAGATGGCGCTGCCACCACCATGCTCCTCCTTAACGACCGCACGAACAACGTGAAACTGATTCAGATCCATCACcatggcgacgacgacgacgacgacttgCCTCCGGAGGATGTtaacgaagaggaggaggatcAGTCGACGACCATCGTGACGACGGAGGAGATCGTCGATGGGGATCGTGTGAAACGGCGCAAATACGCCGTCATTCGCATCGTGAACGCAGATGGCAGCACGAGTCTCATACACCAGGAGGTGGTGGACGAAGACGAGGGGGAGGGGGAAGAGGACGGggaggaagaagacgatgatgatgatgatggaatgcAACAATCGGAGACGATTTACATTGCGAACGAGAcgggggaggaggaggaggaggcggcgATGGAGTTggagggggaggaggaggaggcgatgatgatgggagTGGGAGGAGGAAGTTTGGGAGTGGGAGGAGGACTGGGAGGGGCGGGAGGAGGACTGGGAGGGGCGGGAGGAGGACTGGGAGTGGTGGGAGGAGGGAGTTTGGGAGTGGGAGGAGGGAGTTTGGGAGTGGGAGGAGGGAGTTTGGGAGGTCGTCGATTGCGGGGGAGGAAGTTGACGGCTGTGGAGGAGGTGATggagggggaggaggaggTTCATTTTGAGGTCGAGGAggagggggaggaggaggaggagttGCTCCTCGTGCGTAGTCAACAAGTGACGAAATCGAGGCGGGgaggtcgtcgtcgtcaaggGGTTGTCGTCGTTGGCGGGGGAGGTGGGGGTAAGAGACGGAGACGAAAGAGgtcggaggaggaggaggaggtggtGGAGGACGATGACGATCCGGACGACCCGGACTACGAGGTGGATGGGAGTGGGGGCAGCGGTGGGAGTCGAGGTGGCGGTGGGGCGAAACGGAGGAGGAAGCGGCAGTCGAtgggggaggaggaggaggagcgggaggaggaggatgatgatgaggaggaggaggtaCAGAGCCATCGTTGTCCGATCTGTCCCAAATCGTTCAACTTGGAGGCGAGTTTGAAACGTCACATGACCGTGTGTCATCCGCGGGAGGACAAGAACGCGTCGACCAATTCCGAGGACGATCCGTTGGCGTTCAAGTTGTGTCTGTGCTGCGGCGAGCCAGAGGACACGGCGCACATTaCGGGCGACGTCCAGTGCGACCGTTGCGACCTGCTGTTCTCCGTCGCGAAGCACATGCAGCGCCACCGGAGCCTCGACCATCCGGACGCGAGCGCCGCGACGGCGGCCCCGTACAAGTGCTGCGAGTGCGACGCGGCCGTCGCCACCCGCACGGAAATGTGCGATCACATGCGCACGCACCCGATCGCGAAACCGTACAGGTGCAAATATTGCACGCGCGAATTCACCCGCAAATACCACCTGGACCGACACGTGTCGCAAAAGGGCTGCGACGGTTACCCGCGCGACGAGTTCCGGTGTCGCGTGTGCGAACGTACGTTCACGCGCAAAGACAATTTGCGCGATCATTTGCGCGTGCACACGGGGGAGTCGCGGGCGCCGAAGAAGCTCGTCTATTGCAACTATTGCAACAAGGGTTTCGGCAGTTCCGCCTTCCTCACGGTGCACATGCGCACGCACACGGGCGAACGGCCGTACAAGTGCGACCTGTGTCCGAAACGGTTTCCCTCCAGCGGCGCGATGAAGAAACACCGACGGATGCACACCGGGGAGAAGCCGTACGAGTGCTCGCAGTGCAAACGCCGTTTCGCCGCCAAGGAAACCCTCAATCGCCACTTTCGCACGCACACCGGCGAGAAACCGCACGCGTGCCAATTCTGCGGCAAATCGTTCATCCAGGCGATCCAACTGCGCGCCCACATCTTCCATCACACCGGCGAGAACGCGTTCACGTGCCCCCACTGCAATCGCGCCTTCAACCGTCGCGTCCGACTCACGACGCACATCCGATTCGTGCACGAGGGCGCGAAACCGATCGAGTGCGCCGACTGTGCGAAGACGTTCTTCCGCAAGGAGGATCTCGCGCGGCACATGATCAAGCACACCGGGGAGAAACCGTACGAGTGCCCGACGTGTCGCAAACGCTTCGCCGTCAAATCCTCCCTCAACACGCACATGCTGACGCACCGCAAGGAGCAGCCGTGCAGTTGCGACGAGTGCGGCCGCGCGTTCATCCGCCAGGACTGTCTGCTGCGGCACATGCGCGCCAAACACCGCGACATCCTCGAGGACATAATGGCGGAGGCGGAGAAGAAACGGCTACAGAAACACCTGTTGAGCGTCGCCAGCCGTATGTCGAGCGGTTCGTCGCGAGATGGCGCTACGAGCGCGTCCGGCGGCTGCGGCGGCGGCCCGAAATTCAAAATCACCGAGACCAAGGTGTGGGACGAGCTGACGTTCACCGACAGCGTCAAGGAACTGCTATCGTTGCTAGTCGACGAGTCGACGCTGCACGTCCTCGGCTGGCCGAACACGCCCGTCGACAAATTGCTGGACTTGGTCATCAAACGTTGCGGTCACGAGCCGGCGTCGTGCGAGGATTTCGACTATTTGGGCCGGTTGCGGGAGAACGCGAAACTCTTGTTTACGGTCGTCATTGACGACGAGGCCGTCAAATCGTTGCTCAACAATCAGACGGTCGACGAGGTCATTATGCACGTGCTCAAGTTGGCCAAGGACACGGAtcaagacgaggaggaggaggagggcgTCGTGAACAATAATGGTGGggatgaggaggaggaggaggaggagcaAGATGGCGGCGATGGTGCTGGCGGggaggaggacgaggacgaggaggagtCGTAA
- Protein Sequence
- MAGKEEEKKSIELLLTDRRLAASVDGDDRAVVIDIALEEEATAAAAAVATTTKEEIGVEDGEGAEAVTTKVHFVEAVGAVDDDDGGEEELETKTIEDISHNRYAETYRIQTIDEVNNHHNDDATTTIKQQEDDKTTITTTIDESPLTPTTTINTIITTAATTTTTATSNNSDTYYITTDDQQQQHQLVEEEEVEGEEAGGEEVVIQEEDDGEEGEELIDGAATTMLLLNDRTNNVKLIQIHHHGDDDDDDLPPEDVNEEEEDQSTTIVTTEEIVDGDRVKRRKYAVIRIVNADGSTSLIHQEVVDEDEGEGEEDGEEEDDDDDDGMQQSETIYIANETGEEEEEAAMELEGEEEEAMMMGVGGGSLGVGGGLGGAGGGLGGAGGGLGVVGGGSLGVGGGSLGVGGGSLGGRRLRGRKLTAVEEVMEGEEEVHFEVEEEGEEEEELLLVRSQQVTKSRRGGRRRQGVVVVGGGGGGKRRRRKRSEEEEEVVEDDDDPDDPDYEVDGSGGSGGSRGGGGAKRRRKRQSMGEEEEEREEEDDDEEEEVQSHRCPICPKSFNLEASLKRHMTVCHPREDKNASTNSEDDPLAFKLCLCCGEPEDTAHITGDVQCDRCDLLFSVAKHMQRHRSLDHPDASAATAAPYKCCECDAAVATRTEMCDHMRTHPIAKPYRCKYCTREFTRKYHLDRHVSQKGCDGYPRDEFRCRVCERTFTRKDNLRDHLRVHTGESRAPKKLVYCNYCNKGFGSSAFLTVHMRTHTGERPYKCDLCPKRFPSSGAMKKHRRMHTGEKPYECSQCKRRFAAKETLNRHFRTHTGEKPHACQFCGKSFIQAIQLRAHIFHHTGENAFTCPHCNRAFNRRVRLTTHIRFVHEGAKPIECADCAKTFFRKEDLARHMIKHTGEKPYECPTCRKRFAVKSSLNTHMLTHRKEQPCSCDECGRAFIRQDCLLRHMRAKHRDILEDIMAEAEKKRLQKHLLSVASRMSSGSSRDGATSASGGCGGGPKFKITETKVWDELTFTDSVKELLSLLVDESTLHVLGWPNTPVDKLLDLVIKRCGHEPASCEDFDYLGRLRENAKLLFTVVIDDEAVKSLLNNQTVDEVIMHVLKLAKDTDQDEEEEEGVVNNNGGDEEEEEEEQDGGDGAGGEEDEDEEES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -