Hpla007866.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hololepta plana
Gene Symbol
-
Assembly
GCA_963695495.1
Location
OY968836.1:9004892-9007365[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0076 0.64 10.3 5.1 2 23 115 136 114 136 0.96
2 15 7.3e-07 6.2e-05 22.9 2.3 1 23 141 163 141 163 0.96
3 15 0.00037 0.031 14.4 3.4 1 23 169 191 169 191 0.97
4 15 0.0028 0.24 11.6 1.3 1 20 197 216 197 218 0.92
5 15 5.7e-07 4.8e-05 23.2 0.4 1 23 225 247 225 247 0.98
6 15 4.8e-06 0.00041 20.3 1.7 1 23 430 452 430 452 0.97
7 15 1.1e-06 9.4e-05 22.3 1.8 1 23 458 480 458 480 0.98
8 15 2.7e-05 0.0023 18.0 1.5 2 23 487 509 486 509 0.94
9 15 8.8e-06 0.00074 19.5 1.0 1 23 521 543 521 543 0.99
10 15 1.4e-05 0.0012 18.9 5.1 1 23 549 571 549 571 0.98
11 15 9.5e-07 8e-05 22.6 0.5 1 23 578 600 578 600 0.96
12 15 1.9e-06 0.00016 21.6 1.0 1 23 606 628 606 628 0.98
13 15 1.8e-07 1.5e-05 24.8 0.9 3 23 636 656 634 656 0.96
14 15 1.2e-05 0.001 19.1 0.2 1 23 662 684 662 684 0.99
15 15 0.044 3.7 7.9 0.4 1 23 689 712 689 712 0.94

Sequence Information

Coding Sequence
ATGGAAActaacgatttaaatttaaggaTAATATGCAGGACGTGTCAGAGCGATTCGCCGGAGATGGAATTGATATTTGAAGCGAGTAATAATCTAGACGAGAATCTCCGTATTGACGAGATGCTAATGGAATGTACATCCTTGCAGgtATTATGTGAAGATGGTTTACCAAAATATATTTGTCAAGTGTGCAAAGCGCAATTGTTTAGTGCTTATGCGTTTAAAAAGCAATGCGAAAAATCGTATGCAAGCTTTCAGGAAACGTTTAACATtccaaaaaatgaaaacgcgACGAAAAGGGATTACATTCAAATATTAGATAACACAAATCAATTATTGTTAACATGTTGTACATGTGGCAAGATGTTTACGACATTAGATGGTTTAAGATGCCACAAGAGGATTCACACTGGTCATTTCTTCAAGTGTAAGGAATGTGATAAATCATACACTAGATTAGCTCATTTGCAAAGACACGAGATGGCACATGATAAGAAGAAGGCTCACATGTGTAAGATATGTAACAGGATATTGACAAGGATAGAACATTTAAAGAGGCATTTGGTAACACACTTAAAAGACAAACCACATGTATGTGCTAAATGTCAGAGAGGATTCAACAGGGCAGAACATTTGTCCTCACACAGTCAAAAGTGTTCTGGTGCTAAAGTATATTCATGTGATATTTGTAATAAAGCATTTAGCAGGAAGGATAGCTTAGATGTGCATAGACAGGTACATGACGGTAATATGCCAGTTTTACCTAAAATTGGCAATCTGGACAATATAGATGAACATTATGTGGAAATTGATATGGATGACAAAATTCTGTCCGATAATGAGCTATCAGAGGAAGAATATGATCTGCTGGATGTTGAAATTGAGGTGAGAGAAAATGTTTTGGTGGATGTGGGCAAAGATCTGATAAAGGATGAACAACCTGTGACCACAATTAAGCAAGAGTTGGATATGGAGACTACATTTATTGATAAATCAGTTCAGAGTGAGAACATTATATTGGAAGGAGATACAAAAGCAGAAGTAAAGGATAATTATGTGGATGATGAAGTGAACGACTCCGAAAGCGTCCATTCCGAATATCTTCCTACTAAACCTAAGAAAAGGGGCAGGGGCCGACCTAGGAAGCATATTAACAAAAGGCCAAGAGGTAGGCCACCTTCGAGGAAGATTAAAAAGGAATGCCCACACAAAGAAGAGGGTGATGACGAACCATGTGAAATGTGTGAAGACAACAAACAGGACATGAATTTAGATGATAATCTTCTTCATATATGTAGTATATGTAATAAGGTCTTTCCGCGAATCACGTATCTAAAACGCCATTTAAATTCacataaaattgttaaatcgtACGCCTGTGATAACTGCCCGAAATCGTTCATCAAAAAAGCCCATTTAAGTCAACACATGAAATCGCACGTAAAGTCACCTCTCTTGCCATGCGACGAATGCGATAAAATATTCCGTAACGTCGAGCATTTAACGAAACACAAGGAACGCAAGCATAGCGGCAACGAGAAATTGATCGGCGAGAAGAAATTCAAGTGCGACGTTTGCGAGAAAGCGTTCACGACGGAAAAATACCGAGAAGTCCACATGAGAAGTCACACGGGCGAGAAAACGTTCAAGTGCCGCTCGTGCGAGAAATCTTTCATATCCAAATCACATCTCACCGAACACATGAAATTCCACAACGACAATTCGAAAAAGTTTCTCTGTTCCGAATGCGGACAGCGATTCATTAGGAACGATTATCTCGTCATACACATGAGACGGCACCGAGGTGAGAAACCGTTCAAGTGCCAGTATTGCGGGAAAGGTTTTCCAAGGACCACAGACTTAACCGTCCACGAGAGATATCATACGGGCGAGAAGACGCATCTGTGTACGATCTGCGGCCGCGGGTTCGGCAGAGCCTATAATTTGACCGTGCACATGAGAACGCACACCGGCGAGAAGCCATATCGATGTACTTATTGTGATGCGGCGTTCGCACAGGGTAACGATCTAAAGGCGCACGTCCGTAGGCATACGGGCGAACGGTTCCAATGCGAACTTTGTCCAGAAACGTTCCTCATGGGATACTTGTTGACGCAGCACAAGAGGAACGTTCACGGTTTGAATGTAGTGAGCAACATCAGGAGATTAAAACCGGTTACAAAATTGAATAGTACCGGTGAACCACCGATTACGATACCGTTACCCAAACCGGTGATACCGACGACTATAAATTTGCCTCTCAATATGGTTTAG
Protein Sequence
METNDLNLRIICRTCQSDSPEMELIFEASNNLDENLRIDEMLMECTSLQVLCEDGLPKYICQVCKAQLFSAYAFKKQCEKSYASFQETFNIPKNENATKRDYIQILDNTNQLLLTCCTCGKMFTTLDGLRCHKRIHTGHFFKCKECDKSYTRLAHLQRHEMAHDKKKAHMCKICNRILTRIEHLKRHLVTHLKDKPHVCAKCQRGFNRAEHLSSHSQKCSGAKVYSCDICNKAFSRKDSLDVHRQVHDGNMPVLPKIGNLDNIDEHYVEIDMDDKILSDNELSEEEYDLLDVEIEVRENVLVDVGKDLIKDEQPVTTIKQELDMETTFIDKSVQSENIILEGDTKAEVKDNYVDDEVNDSESVHSEYLPTKPKKRGRGRPRKHINKRPRGRPPSRKIKKECPHKEEGDDEPCEMCEDNKQDMNLDDNLLHICSICNKVFPRITYLKRHLNSHKIVKSYACDNCPKSFIKKAHLSQHMKSHVKSPLLPCDECDKIFRNVEHLTKHKERKHSGNEKLIGEKKFKCDVCEKAFTTEKYREVHMRSHTGEKTFKCRSCEKSFISKSHLTEHMKFHNDNSKKFLCSECGQRFIRNDYLVIHMRRHRGEKPFKCQYCGKGFPRTTDLTVHERYHTGEKTHLCTICGRGFGRAYNLTVHMRTHTGEKPYRCTYCDAAFAQGNDLKAHVRRHTGERFQCELCPETFLMGYLLTQHKRNVHGLNVVSNIRRLKPVTKLNSTGEPPITIPLPKPVIPTTINLPLNMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-