Basic Information

Insect: Hololepta plana
Gene Symbol: -
Assembly: GCA_963695495.1
Location: OY968837.1:5762921-5767744[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.14 12 6.3 0.2 2 23 32 52 32 52 0.95

2 23 0.00018 0.015 15.4 1.0 1 23 59 81 59 81 0.94

3 23 6.9e-08 5.8e-06 26.1 1.9 1 23 87 109 87 109 0.99

4 23 4.2e-08 3.5e-06 26.8 0.7 1 23 115 137 115 137 0.98

5 23 1.4e-05 0.0012 18.8 0.7 1 23 143 166 143 166 0.98

6 23 1.9e-06 0.00016 21.6 3.6 1 23 172 194 172 194 0.97

7 23 0.052 4.4 7.6 0.0 1 19 200 218 200 220 0.95

8 23 1.9e-06 0.00016 21.6 1.3 2 23 264 285 264 285 0.98

9 23 1.1e-05 0.00095 19.2 1.5 1 23 292 315 292 315 0.91

10 23 5.9e-08 4.9e-06 26.4 2.9 1 23 321 343 321 343 0.99

11 23 8.6e-06 0.00073 19.5 0.8 1 23 351 373 351 373 0.98

12 23 6.8e-08 5.8e-06 26.2 3.1 1 21 379 399 379 401 0.96

13 23 2.8e-05 0.0023 17.9 1.8 1 23 407 430 407 430 0.94

14 23 0.00049 0.041 14.0 2.3 2 23 463 484 462 484 0.90

15 23 0.0012 0.1 12.8 2.3 1 23 489 512 489 512 0.94

16 23 0.015 1.2 9.4 1.2 2 23 518 539 518 539 0.92

17 23 3.2e-05 0.0027 17.8 0.9 2 23 546 568 545 568 0.96

18 23 0.00087 0.073 13.2 4.2 1 23 573 595 573 595 0.98

19 23 4.2e-06 0.00035 20.5 2.4 1 23 602 625 602 625 0.97

20 23 3.4e-07 2.8e-05 24.0 3.0 1 23 630 652 630 652 0.97

21 23 3.7e-08 3.2e-06 27.0 1.8 1 23 658 680 658 680 0.99

22 23 3.6e-08 3e-06 27.0 0.8 1 23 686 708 686 708 0.99

23 23 1.4e-05 0.0012 18.9 0.1 1 23 714 736 714 736 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.14	12	6.3	0.2	2	23	32	52	32	52	0.95
2	23	0.00018	0.015	15.4	1.0	1	23	59	81	59	81	0.94
3	23	6.9e-08	5.8e-06	26.1	1.9	1	23	87	109	87	109	0.99
4	23	4.2e-08	3.5e-06	26.8	0.7	1	23	115	137	115	137	0.98
5	23	1.4e-05	0.0012	18.8	0.7	1	23	143	166	143	166	0.98
6	23	1.9e-06	0.00016	21.6	3.6	1	23	172	194	172	194	0.97
7	23	0.052	4.4	7.6	0.0	1	19	200	218	200	220	0.95
8	23	1.9e-06	0.00016	21.6	1.3	2	23	264	285	264	285	0.98
9	23	1.1e-05	0.00095	19.2	1.5	1	23	292	315	292	315	0.91
10	23	5.9e-08	4.9e-06	26.4	2.9	1	23	321	343	321	343	0.99
11	23	8.6e-06	0.00073	19.5	0.8	1	23	351	373	351	373	0.98
12	23	6.8e-08	5.8e-06	26.2	3.1	1	21	379	399	379	401	0.96
13	23	2.8e-05	0.0023	17.9	1.8	1	23	407	430	407	430	0.94
14	23	0.00049	0.041	14.0	2.3	2	23	463	484	462	484	0.90
15	23	0.0012	0.1	12.8	2.3	1	23	489	512	489	512	0.94
16	23	0.015	1.2	9.4	1.2	2	23	518	539	518	539	0.92
17	23	3.2e-05	0.0027	17.8	0.9	2	23	546	568	545	568	0.96
18	23	0.00087	0.073	13.2	4.2	1	23	573	595	573	595	0.98
19	23	4.2e-06	0.00035	20.5	2.4	1	23	602	625	602	625	0.97
20	23	3.4e-07	2.8e-05	24.0	3.0	1	23	630	652	630	652	0.97
21	23	3.7e-08	3.2e-06	27.0	1.8	1	23	658	680	658	680	0.99
22	23	3.6e-08	3e-06	27.0	0.8	1	23	686	708	686	708	0.99
23	23	1.4e-05	0.0012	18.9	0.1	1	23	714	736	714	736	0.97

Sequence Information

Coding Sequence: ATGAATCAATCGATGAGCCACCTCCAACAAGTAGTGCTAGTGATCAACCAGGTCCATCTGGAGTACAAAAGGCCACTGGCGAGCCACCCCGCCGTATGTCACATCTGCGACACGATCATAAGCGAAGGTACGCTGGCGAATCATCTTAAAGTGCACACGAACAACCAGAAACATTTCGTCTGCGAGCGTTGCGGCAAAAGTTTTGCCAACAGGGCCGTGTTCATAAGGCACAAATTCTACCATCGCAACGAGCGTCCGTATCAATGCGAACACTGCGGCAAATCGTATAAACAAAGCAGCGGTTTGATGGTGCACTTGAGAAACCATGCCGATAGAAAACTGTACATTTGCGACGTCTGCGGCAAAGGTTTCAATCGTCAATACAATCTGAACATTCATAAACGGACGCACACGAAAGTGAGACCGTACAAATGCGATCAGTGCGATAAGACTTTCATCTACGCCACGGGATTAGCCCTACACAAGAGATCCACTCATGCCGGCATGAAACCGTTTCAGTGCGAGCATTGCGGGAAGTATTTCAATCAGAAATCTTCGTTGCTCCGTCACACGGTCTCGCATACCGGCGTAATGCCGTACGAGTGCGGTCGTTGCGGCGCCGGTTTCATGAAGAGAAGTCAATTAGACGAGCACGAGGATTATTCGCAATCGACGCCGAAACCGTACCATTGCGAATTTTGTAGCGACCAGTTCGCTGACGGTTGTTCGTTAACCAACCACGTAAACGCCTACCACCTGCGGCGACACGACGACGTCATCGATCCTCGTAAATGCCCGAAATGTGACAAAGAGTTCACCAACGACGGTCAAATGCGTAATCACATGCGGTCGCATGCCGCTAGGAAACAATTCTTCAAATGCAATCAATGCGATCGCACGTTTCGCAATCGAACCTATTTGAAAGATCACGCGAGTGCCGAACACGGCGGCACCAAGCGGTACGAGTGCCACGTGTGCGGCAAACGGTTCACGTATAAGGGCACGTTGACCACTCACATGCTCACGCACACCAGCACCGGATCGAAACGGTTCGAGTGCGACGTGTGCGGCACGGGTTTCACGCGAAAGACGTACTACGAGCAGCACGTGAACCGGCACCGAGGGATCAAACCGTTCAAATGTAACGATTGCGGCAAATCGTTCACCAACAACGGCAATTTGACGGTGCACATGAAGTGTCACACCGGCGAACCTTTGTTCAAGTGCAAGACGTGCGGCCAACGATTTTTCACGCGCGGACTTTTGAAACGGCACGAGACGGTGGACCACAAGAACGTtgtgaaattgaaattaagGACGTTGGATCGTAAAATCTTTTCGGATAAAGTGAGGAGAAAGTGGAAGGGCGTCGAGAATCCGGAAATAAAATGCcacatttgcaataaacaattcgTGACACTGCGACAACTTTATAAGCACAACGTCTATCATTTGGAAAAGATCCATCCGTGCGACGTTTGTAAGAAAATGTTTCGCCGAATGGGCGATATGCGGATGCACAAGAAGTTGACGCACGAGAAAGTCCTGCGTCAGTGCGACATATGCGACTTCAAGGCGTTTTCCAGAGAGACGATGAAGCGACACCAGCTGAGTCACAGCAATGATTATCAGGTCGTGTGCGAAATATGCGGCAAAGAGTTTTACACGCGGACGTCGTACAGAAGTCACAAGAAGAAGATCCACGAGAGCAAATTGCACACCTGCGCCTTGTGCAAACGCACGTATCGCACGTACGATGGCTATCGCCGTCATTTGCAACGGCACGAGGGCCAGTACACGGAGTACAAATGCACGGAATGCGATAAGATTTATCGCTCGCACAGCGGCCTAACGAAGCACGTGCAAGTGTTCCACAAGAACAACTATCACATGTGCGACATTTGCGGCAAATCGTTGACGACGCCGGAAAGCTTGAAACATCACATGCGACGGCACACCGGCGAGAAACCGTTCGAATGCACGACGTGCGGGAAATCGTTCGTACGAAAGCAATTGTTAAAGATACATCAACGCACGCACACCAAAGAGAAACCGTTTAAGTGCGAACTGTGCGGCAAAAGGTTCACGCAACGATCGCCGCTAGTTATACACATGCGGACGCACACCGGGGAGAAGCCGTATCCGTGCGTCGCTTGCGGCAAGAACTACATATCGAAATCGGCGTTAACGCTACACATGAAAGTGCACGGTGTCGGATTGAAAGATGCGTGA
Protein Sequence: MNQSMSHLQQVVLVINQVHLEYKRPLASHPAVCHICDTIISEGTLANHLKVHTNNQKHFVCERCGKSFANRAVFIRHKFYHRNERPYQCEHCGKSYKQSSGLMVHLRNHADRKLYICDVCGKGFNRQYNLNIHKRTHTKVRPYKCDQCDKTFIYATGLALHKRSTHAGMKPFQCEHCGKYFNQKSSLLRHTVSHTGVMPYECGRCGAGFMKRSQLDEHEDYSQSTPKPYHCEFCSDQFADGCSLTNHVNAYHLRRHDDVIDPRKCPKCDKEFTNDGQMRNHMRSHAARKQFFKCNQCDRTFRNRTYLKDHASAEHGGTKRYECHVCGKRFTYKGTLTTHMLTHTSTGSKRFECDVCGTGFTRKTYYEQHVNRHRGIKPFKCNDCGKSFTNNGNLTVHMKCHTGEPLFKCKTCGQRFFTRGLLKRHETVDHKNVVKLKLRTLDRKIFSDKVRRKWKGVENPEIKCHICNKQFVTLRQLYKHNVYHLEKIHPCDVCKKMFRRMGDMRMHKKLTHEKVLRQCDICDFKAFSRETMKRHQLSHSNDYQVVCEICGKEFYTRTSYRSHKKKIHESKLHTCALCKRTYRTYDGYRRHLQRHEGQYTEYKCTECDKIYRSHSGLTKHVQVFHKNNYHMCDICGKSLTTPESLKHHMRRHTGEKPFECTTCGKSFVRKQLLKIHQRTHTKEKPFKCELCGKRFTQRSPLVIHMRTHTGEKPYPCVACGKNYISKSALTLHMKVHGVGLKDA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -