Hpla007684.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hololepta plana
Gene Symbol
-
Assembly
GCA_963695495.1
Location
OY968836.1:6597585-6602699[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 23 7.5e-06 0.00063 19.7 0.5 1 23 178 200 178 200 0.98
2 23 0.0016 0.13 12.4 0.4 1 23 206 228 206 228 0.97
3 23 2.7e-05 0.0022 18.0 3.1 1 23 234 256 234 256 0.98
4 23 0.0014 0.11 12.6 1.9 3 23 270 290 268 290 0.95
5 23 1.6e-05 0.0013 18.7 0.7 1 23 296 318 296 318 0.98
6 23 1.3e-05 0.0011 19.0 7.1 1 23 324 346 324 346 0.97
7 23 4.5e-06 0.00038 20.4 0.0 1 23 352 374 352 374 0.98
8 23 5.1e-07 4.3e-05 23.4 0.1 1 23 380 402 380 402 0.99
9 23 3.6e-08 3.1e-06 27.0 0.6 1 23 408 430 408 430 0.98
10 23 4e-06 0.00034 20.6 3.3 1 23 436 458 436 458 0.98
11 23 1.3e-06 0.00011 22.1 0.9 1 23 464 486 464 486 0.96
12 23 3.4e-05 0.0029 17.7 1.1 1 23 492 515 492 515 0.96
13 23 0.0009 0.076 13.2 1.9 2 23 778 799 777 799 0.98
14 23 1.6e-06 0.00014 21.8 0.7 1 23 805 827 805 827 0.99
15 23 4.1e-05 0.0035 17.4 5.1 1 23 835 857 835 857 0.97
16 23 0.00066 0.056 13.6 1.4 1 23 863 885 863 885 0.98
17 23 0.00019 0.016 15.3 1.7 1 23 897 919 897 919 0.96
18 23 5.6e-07 4.7e-05 23.3 1.2 1 23 925 947 925 947 0.96
19 23 1.7e-05 0.0015 18.6 0.5 1 23 953 975 953 975 0.99
20 23 6.3e-07 5.3e-05 23.1 0.5 1 23 981 1003 981 1003 0.98
21 23 9.5e-06 0.0008 19.4 1.0 2 23 1010 1031 1009 1031 0.97
22 23 4.1e-05 0.0035 17.4 0.1 1 23 1037 1059 1037 1059 0.99
23 23 2.3e-08 1.9e-06 27.6 0.3 1 23 1065 1087 1065 1087 0.98

Sequence Information

Coding Sequence
ATGGATATGAGCGTTTATTTGCAAGCGCCCCTAAGATTGGACAAGATTTGTAGAGCGTGTTTAACTGAAAAAGGCGATATGAAGCCATTATTTGGTGCTTGTCTAGATGAAATGCTAGTCTCGTTTGCTTCCATAGAAGTGAAAGAAGACGATGGCTTGCCAAATTTGATGTGTGTACAATGCGTTTTACAATGTAGTAGAGCTTATACATTCAAACAGTTATGCGAAAGATCAGAGAATATTCTTAAGCAATACACAAGTCCCGAGTTCCAATTGGCGTTGTCATCCAAATCCATGTTAAAGGCAGAAGATGAGAGTGGTGATAGTAATGATAACATAGCATTCGACGATAGTATAATAGCGACGGAGAGTATGCCAGAATATGATGACTTCACCGAGGTCGATAATATTGGTATAGATGAGAAGAGCGATATTTATAGCATAGAACCTTGCACCACCCTAATCGTCGAAGAACCATCGCAAGACGAAAAGCCCCAAGACAAACTGAAGGCTCAAAAGAACAAACTAAAATTCTCGTGTACGAAATGCGACGAATCGTTTGCGCTAAAAGTCGACCTGAAGTTGCACATGCTCACGCATCCGAAAGACTTGGACCACGTGTGCGACGTGTGTAACAAAGGTTTCGCGGAGGCCAGAATATTGAAACGACACTTGAAGATCCATTTGGAGAAGAAACCGCATCAGTGCGATCAATGCGACATGTCGTTTGCGGAGAGTTCGAACTTGAGCAAACACAAGAAGAAACATACGGGCGAACTGAGGAACATCACGGGGAAGCCGCACCTGTGTTCTTCGTGCGGTCGCGCCTTCAAATGGGCCTCGAGTCTTTCCAAACACATGAAGTACCACACCGGTCACAAGCTGTTCACGTGCGAGTATTGCAATAAGCAATATGTGGAAGCGAGAAGTCTGAAGATCCACATCAGATCCCACACGGGCGAACGGCCGCACGTGTGCGACATTTGCAAGAAGACGTTCACGCAACATTGCAACCTGGAGAAGCATTTGCGCGTCCACACGGGCGAACGACCATTCGCGTGTCCCATCTGTGGTAAAGGCTTCACACAGTCCGGTTACGTCGGCATCCACATACGAACGCACACCGGCGAACGTCCGTACGTTTGCAACGTGTGCGGCAAAGCGTTCGCCGGCTCGAACACGTTGTCCATTCACATGCGAACGCACACCGGCGAGAAACCGTTCTCTTGCACGATGTGCGGCAAATCGTTCAGCCGTCAGGAATCCCTCGTCATACACATTCGATCGCACACCGGCCATCGGCCGCACGTTTGCTCCATTTGTAACCGCGGCTTCACGTCTTCCGGCCATCTGTCCAGTCATTTGCGAACGCACACCGGCGAGAAGCCGCACGCTTGTAACGTGTGCGGCAAACGTTTCGCCGGTTCGAACAGTTTAAAAGTGCACATGCGAAGTCACTCGAAAGAGAAAGCGTTCACGTGCAAGGTTTGCTCGAAGAGGTTCGCGCAATCGTGGACATTGCAGCAACACGTGTCTTCTAGTCATGCGGACGATGGCGAGGAGGACGATGAAGAAACTATGGATGGGATAGAGGAGACAGAAACGACCAAAGTGGGGACGGTCGATGTTACCGATTTGTTCCGTGAAGAACAATCGACCAGTGGAAGTGTTTTGGAACGATCCAATTACGccatttgcattttatttaattacgatACGATCGGAGCGATAAACGATTCGAAAAGTGGCCGCAAAGCGATGGAGCTGAAGAATGAGTTCGACATGAACAAGATGTGCCGCGCGTGTTTAACGCAAATCGGGGAAATGCATTCGGTGTTCGTAGCCGACGAATCCATTGGCCAAGCAATGATACTAGCCGAGATGATAATGGGATTGACTAGCGTACAGATCGAGAACGGTGACGGTCTGCCGAGTTTGATTTGTTTGGAGTGTTTAGAACAAGTGAATCGAGCGTATACGTTTAAACAATTGTGCGAACAATCGGACGCAAATTTGCGGCAATATTTGGGGAAACCGATTAAAGGGAAAGCGCAAAAGAAGGAGAATTTGCGAAATCAAAAGTACAATAGTGTGTCTCTAATAGACACATTTGGTtcggatgatgatgacgatcatTCATCCAGTGacagtgatgatgatgatgataatttaataagcAATCCAATACCTGCTGAAGAGAATGATGAAAAGACAGTTGCTCAAAAACAATTAGTTAGGACGAAGCtgttaaaaaagaagttggcaaaaaagaaattgctgtCAAAAAATGGAGGTGTATTAGATCTGAAGAAGTTGAAGAGACACTCGAATCAGTGTAACGTTTGCAAGAAGGAATTCATGAACATCAAATCGTTCTTGAAACATTTACAAACTCACATCGAAGATCGGCCgtttaaatgcgaattatgTCCGCGGGCTTTCACGGAGGAGAATTATCTAAACAATCACATGCGAACGCACCTACCCGACGACCAGAAGCCGCACGAATGTACGATATGCAAAAAGCGTTTCATCCACGAAACGTTATTAAACAAGCACATGCTGAAACACAGTGACAGTAAACCTTATGTGTGCAAAGTTTGCAACAAAGGCTGCTACGCGGAGAACAGCCTGTTGAAACACATGAAGATACACGAGAAGAAGGAAGGCGATCCGGCATTGCTGAAGCACATttgcgattattgcaaaacggAATTTCCCGATTCGCATTCGTTAGCCGTGCACATCAAGCAACACACAGGCGATCGACCGTTTTTGTGTAACACGTGCGGCAAAACGTTTCCGCAACGATTCAACTTGGAATTGCATCTTCGCACGCATACAGGTGAACGCCCTTTCACGTGCGAAGTGTGTAAGAACGGCTACGTGTCGAAAGCCAGCCTGAAGATCCACATGCGAACGCACACGAACGAGCGGCCGTTCGTTTGCGACACGTGCGGCAAAGCGTTCCGACAATCGGGCGATCTCACCAGTCACAAACGATTGCACGGGACGGAGAAGCCGATCGAATGTTCCGTTTGCGGCAAGAAATTTACGACCGTGATGAAACTGAAGTACCACATGCGAAATCATACCGGCGAGCGGCCGTACGTGTGCAGCGTGTGCGGCCGCGGTTTCACCGTCAACACGATTCTCTTGCGGCACATGCGAGTGCACTCCGGCGAGAGGCCGTACGTGTGCGTGATTTGCGGCAAAGCGTTCTCGCAATCGAGCACCTTGAACACGCACATGAAGGTTCACGCGCCCTCCAAATTCAATTCGCAAGAGCGCAACGCGAAATTTACGCAACAATCGCAACAACAAACTAATGCGAAGTTTATGGCCGCCAATAACGAGCAGCATCAGCAGCAGGGCCAGCAGCGAATTCAAATGCAGCAGCAAGCGGCGCAACACCATCAGAATGGTATGCAGATGGCACCTACGGAGAATAGGATGCAAttaatgcaacaacaacaacagaataataatcgattaatgcTCGACGATTCGCACTTGGTGAAAGAGGAGAGTTTAAtaacggacgacgacgataagtTTATTGCGAATTACACGCATTTCTTAGTTAACGTAACGGAACCGCAACGATTGTTAGCGAACGACAACCGCATGCTCGCCAACGACAGCAGATTGTTGAATCAGTCCAATAACAGAATGACGACGAATAACGAGAATAGCAGACAACAGCAGATGGTCATCGAAAACAGCAGGATATTGACGGATAAATATTTGACCAACAACGATCCATATACGAGAGGACACAtgcaacaattataa
Protein Sequence
MDMSVYLQAPLRLDKICRACLTEKGDMKPLFGACLDEMLVSFASIEVKEDDGLPNLMCVQCVLQCSRAYTFKQLCERSENILKQYTSPEFQLALSSKSMLKAEDESGDSNDNIAFDDSIIATESMPEYDDFTEVDNIGIDEKSDIYSIEPCTTLIVEEPSQDEKPQDKLKAQKNKLKFSCTKCDESFALKVDLKLHMLTHPKDLDHVCDVCNKGFAEARILKRHLKIHLEKKPHQCDQCDMSFAESSNLSKHKKKHTGELRNITGKPHLCSSCGRAFKWASSLSKHMKYHTGHKLFTCEYCNKQYVEARSLKIHIRSHTGERPHVCDICKKTFTQHCNLEKHLRVHTGERPFACPICGKGFTQSGYVGIHIRTHTGERPYVCNVCGKAFAGSNTLSIHMRTHTGEKPFSCTMCGKSFSRQESLVIHIRSHTGHRPHVCSICNRGFTSSGHLSSHLRTHTGEKPHACNVCGKRFAGSNSLKVHMRSHSKEKAFTCKVCSKRFAQSWTLQQHVSSSHADDGEEDDEETMDGIEETETTKVGTVDVTDLFREEQSTSGSVLERSNYAICILFNYDTIGAINDSKSGRKAMELKNEFDMNKMCRACLTQIGEMHSVFVADESIGQAMILAEMIMGLTSVQIENGDGLPSLICLECLEQVNRAYTFKQLCEQSDANLRQYLGKPIKGKAQKKENLRNQKYNSVSLIDTFGSDDDDDHSSSDSDDDDDNLISNPIPAEENDEKTVAQKQLVRTKLLKKKLAKKKLLSKNGGVLDLKKLKRHSNQCNVCKKEFMNIKSFLKHLQTHIEDRPFKCELCPRAFTEENYLNNHMRTHLPDDQKPHECTICKKRFIHETLLNKHMLKHSDSKPYVCKVCNKGCYAENSLLKHMKIHEKKEGDPALLKHICDYCKTEFPDSHSLAVHIKQHTGDRPFLCNTCGKTFPQRFNLELHLRTHTGERPFTCEVCKNGYVSKASLKIHMRTHTNERPFVCDTCGKAFRQSGDLTSHKRLHGTEKPIECSVCGKKFTTVMKLKYHMRNHTGERPYVCSVCGRGFTVNTILLRHMRVHSGERPYVCVICGKAFSQSSTLNTHMKVHAPSKFNSQERNAKFTQQSQQQTNAKFMAANNEQHQQQGQQRIQMQQQAAQHHQNGMQMAPTENRMQLMQQQQQNNNRLMLDDSHLVKEESLITDDDDKFIANYTHFLVNVTEPQRLLANDNRMLANDSRLLNQSNNRMTTNNENSRQQQMVIENSRILTDKYLTNNDPYTRGHMQQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-