Hpse014694.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376338.1:7229570-7232161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.015 0.95 10.4 0.7 2 23 68 89 67 89 0.95 2 12 0.0018 0.12 13.3 3.7 1 23 95 118 95 118 0.93 3 12 0.00065 0.042 14.7 3.5 2 23 135 156 134 156 0.97 4 12 0.11 6.8 7.8 6.3 1 23 162 184 162 184 0.99 5 12 0.033 2.1 9.3 1.6 1 23 192 215 192 215 0.96 6 12 2.2 1.4e+02 3.6 0.4 3 21 225 243 224 244 0.92 7 12 0.14 8.9 7.4 7.6 1 23 370 392 370 393 0.96 8 12 0.094 6 7.9 0.6 1 20 401 420 401 422 0.91 9 12 9.4 6e+02 1.6 3.5 2 23 430 451 429 451 0.92 10 12 6.9e-05 0.0044 17.8 4.2 1 23 454 477 454 477 0.94 11 12 3.1 2e+02 3.1 1.5 2 16 483 497 482 504 0.79 12 12 0.00027 0.017 15.9 1.9 1 23 510 533 510 533 0.98
Sequence Information
- Coding Sequence
- ATGAGTATAAAAACTGAGCCAGATCCTCTAGAAGAAGAAGCAATGAACATGTTTGCCAGTGTATGGGTGAAGGTGGAAGTAAAGGAGAATGAGTCCAGGACGTGCCCTGACTGGAATCTTGAGCAGGCGCTTCCCAGCAATGATATAAACCCCTTAGTACCACCAAAACCGAAAAAGTATCGAAGACCAACGAAACAGTTGAAATGTGATTTGTGCGACTACACAACCGTTTACAAGAACTGCTTGGAGATACATGTGATGGGCCATTACAATCTCAAACCGTTCTCTTGCAACCACTGCAGTTACACCACTAAATATCAGTCATCTTTACTTCGTCATGCAACTATTAAACACAATGAATCTGAGCAAGCGTTACAGAACGGACAACGGTTACCAATGCTACAGTGTGATCACTGCGACTACACTTCATATTTTAAATGGAATTTGAAAGCCCACAAACGCAAGCATAAACTTGATAAACAATATAAATGTCTACGTTGCTCGTACGAATCTTCCTATAAACATAATTTTCTTAAACACAGTAGGACACATGAGAAGAAGGAGTACGAAGCGTTCAAATGTGACAAGTGTCCGTTTGAGACCAAATTCGAAGGCCACATCCAAAGACATTTGGCGAAAATACATAATGAAGTATCCGAGAAAGCAAACAATTGTGATTTATGCGACTTCTCTACTCGGGAGAGGTGGCGATTGAATATACACAAGCAAAGGAGCAAGCAGGAGGTTGCTTTGAAATGCTCTTACTGTGAATTTGTGACGTACTACATGTGTGAGAGCAAAAGACATAAAAGGACTCATTACAATGCATTACTTAAACCGAATGAAGCTAGTTCCATGGCAAATGAAGCTAGTTCCATGGCGTTGACAAAAGAATTTTCTAAAAATCTCAATGAGAAAATTCTAAATCTGACCAACTCGATGGAACTAGAAAGCAATGAATATCAGGAACAGAATCAACTTAATAATGAAACTGAATCTATAGTGAATCAAGGTAGTCATTCACAGTCTAACAACTATACTTTGGATCCCAACCGTTTAGACTGGAACGCGATACAAGTGCTAGAATCAAGTGATAAAGACAAACCTTTTCAGTGCCACATGTGCAGTTACACATCGAAATTCAAAGCTTCCGTTCAACGGCATTTCCAGAGACACCATACAGGAACTCAGAGTCGTCCGTACAAATGTGTAAATTGTGACTTCTCAACTAAAACCAAGGACCAAATCGCTCTGCATAACAAAAGAAGCCGTTCCGAAACTCCCATACAATGTACAGTCTGCGATTTTACAACACGCTTCAAATGCACATCGCTAATGCATCAGAAAATTCACTACACGTTCAAATGCTCAGACTGTCCCTACTCTTGCAGACAAAAGTATGATTTGACGAAGCACTACTTGGCTTTCCACTTGGGATCTGGTCTTAAGTGTCAATACTGCGACTTCACATCCGCTAGAAAAGAGAGCGTACTTTGCCATGAAACTATACACACCGGTAACAAACCTTTCAAATGTAATTTCTGCGACTATTCTTCTGTAAGAAAATCTTTATTAGATAGTCACTTGAAGAGAATGCATAGCGGTATTAATAAGGATAAACCAGCCATTACTGGGAGAAAGATAGAGTCTTTAAAAGTACCCATACCTGATAATAAAGATGAAAAGAATTGTTGTAACGTTAGTGATATTCAGGCTGGATCCGCAGTGCAAAGACTAAAGGTTTTGGACTTTACTCGTGATGAAGATATTAATACTAAAATTCCGGAAAGAAGTGAAGCCAATACACAAGGACTGCAGAATATTACCATTACTCCTCCGTGGGGTATTGGAGAACACGGCTTTGTAGAATGA
- Protein Sequence
- MSIKTEPDPLEEEAMNMFASVWVKVEVKENESRTCPDWNLEQALPSNDINPLVPPKPKKYRRPTKQLKCDLCDYTTVYKNCLEIHVMGHYNLKPFSCNHCSYTTKYQSSLLRHATIKHNESEQALQNGQRLPMLQCDHCDYTSYFKWNLKAHKRKHKLDKQYKCLRCSYESSYKHNFLKHSRTHEKKEYEAFKCDKCPFETKFEGHIQRHLAKIHNEVSEKANNCDLCDFSTRERWRLNIHKQRSKQEVALKCSYCEFVTYYMCESKRHKRTHYNALLKPNEASSMANEASSMALTKEFSKNLNEKILNLTNSMELESNEYQEQNQLNNETESIVNQGSHSQSNNYTLDPNRLDWNAIQVLESSDKDKPFQCHMCSYTSKFKASVQRHFQRHHTGTQSRPYKCVNCDFSTKTKDQIALHNKRSRSETPIQCTVCDFTTRFKCTSLMHQKIHYTFKCSDCPYSCRQKYDLTKHYLAFHLGSGLKCQYCDFTSARKESVLCHETIHTGNKPFKCNFCDYSSVRKSLLDSHLKRMHSGINKDKPAITGRKIESLKVPIPDNKDEKNCCNVSDIQAGSAVQRLKVLDFTRDEDINTKIPERSEANTQGLQNITITPPWGIGEHGFVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -