Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376324.1:11263955-11273352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.6 6.2e+02 1.6 0.2 1 23 95 118 95 118 0.88

2 20 0.72 46 5.1 0.1 3 23 123 143 121 143 0.96

3 20 0.014 0.87 10.6 0.1 2 23 147 169 146 169 0.95

4 20 8.3 5.3e+02 1.8 3.8 3 23 174 195 172 195 0.91

5 20 0.006 0.39 11.7 0.1 1 21 425 445 425 446 0.95

6 20 0.18 12 7.0 1.7 2 23 456 477 455 477 0.89

7 20 1.9 1.2e+02 3.8 0.6 1 23 493 516 493 516 0.78

8 20 7 4.5e+02 2.0 2.6 1 23 525 550 525 551 0.91

9 20 6.1 3.9e+02 2.2 0.8 8 23 600 616 592 616 0.90

10 20 0.25 16 6.6 0.7 2 23 627 649 626 649 0.90

11 20 5.3 3.4e+02 2.4 2.6 1 23 654 677 654 677 0.94

12 20 1.3e-05 0.00085 20.0 1.8 1 23 683 705 683 705 0.97

13 20 5.3e-06 0.00034 21.3 1.7 1 23 712 734 712 734 0.98

14 20 9.8e-05 0.0063 17.3 2.3 1 23 739 761 739 761 0.96

15 20 0.069 4.4 8.3 1.6 1 23 767 791 767 791 0.96

16 20 9.3e-06 0.0006 20.5 2.1 1 23 797 819 797 819 0.98

17 20 2.7e-05 0.0018 19.0 2.6 2 23 826 847 826 847 0.98

18 20 0.00077 0.049 14.5 0.8 2 23 856 878 855 878 0.97

19 20 0.00033 0.021 15.6 1.9 1 23 883 905 883 905 0.98

20 20 0.13 8.4 7.5 4.1 1 23 911 934 911 934 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.6	6.2e+02	1.6	0.2	1	23	95	118	95	118	0.88
2	20	0.72	46	5.1	0.1	3	23	123	143	121	143	0.96
3	20	0.014	0.87	10.6	0.1	2	23	147	169	146	169	0.95
4	20	8.3	5.3e+02	1.8	3.8	3	23	174	195	172	195	0.91
5	20	0.006	0.39	11.7	0.1	1	21	425	445	425	446	0.95
6	20	0.18	12	7.0	1.7	2	23	456	477	455	477	0.89
7	20	1.9	1.2e+02	3.8	0.6	1	23	493	516	493	516	0.78
8	20	7	4.5e+02	2.0	2.6	1	23	525	550	525	551	0.91
9	20	6.1	3.9e+02	2.2	0.8	8	23	600	616	592	616	0.90
10	20	0.25	16	6.6	0.7	2	23	627	649	626	649	0.90
11	20	5.3	3.4e+02	2.4	2.6	1	23	654	677	654	677	0.94
12	20	1.3e-05	0.00085	20.0	1.8	1	23	683	705	683	705	0.97
13	20	5.3e-06	0.00034	21.3	1.7	1	23	712	734	712	734	0.98
14	20	9.8e-05	0.0063	17.3	2.3	1	23	739	761	739	761	0.96
15	20	0.069	4.4	8.3	1.6	1	23	767	791	767	791	0.96
16	20	9.3e-06	0.0006	20.5	2.1	1	23	797	819	797	819	0.98
17	20	2.7e-05	0.0018	19.0	2.6	2	23	826	847	826	847	0.98
18	20	0.00077	0.049	14.5	0.8	2	23	856	878	855	878	0.97
19	20	0.00033	0.021	15.6	1.9	1	23	883	905	883	905	0.98
20	20	0.13	8.4	7.5	4.1	1	23	911	934	911	934	0.97

Sequence Information

Coding Sequence: ATGGCATCAGATGAGTCGGACGATGAACCGCTATCCGTTTTAGCAGCGGAGAAAAAGCTAAACCCAGATAAATTCGTTGTGCCACTACCTGAAACTGAATTTGTTTACGAACCGAAACGAAAAATGAGGAAAATATCTAAGAGAACACGTGATTCTCCCTATAAAAAGCTTCCTCTTACTTTCAAATTTAGTCGCAAGTCGTTGAAGAATACTTTAAATACAGTTATTCAGCGGCCTGCAGATGTGTGGTTGTATTTGAAAGATCTTAACCCTACGGGGCCTTACAGCTGTCTGCTCTGTACTGAATGGTTCATAAACAGATCAAAAGTAATAATGCACTATGTGTTGAACCATAAGAAGGACTTCTGCGGCATTTGCAGATATTTTGTACCAGATAGAGAATCATGGATTGCCCATCTCAAGTTCCACACTCCATGGCCGTGTTCTCAGTGTGTTGAGAACTTCTCATCAGAAATTGAGTTACGACAACATCTGAGCAGTGCACACAAGCTGGTCCACTGCCGTCTGTGCCATTTCCGACTCCCTGACAATGACCAATATAATACCCATTTATTCCAAAAACACAATGTCACAAATGTTTCCAGTAAATATGAAGAAGTACTATGGGAGTTGGAGTATGATAACAGTCCGAAATTCCTTTGCCTTCTCTGTGCAAAATCTAACAATCTATCTTCAACTTTTTTCAACCATTTCATGGGCTTCCACCATTTTACCCTTAAATGTTTCACAAATATAATTTCAGGGAGAGACACTCCATTCACTGTATTTGGTGCTGATGTGAGCCCTGAGTTCATTGAGAGCTTAAAAGATCAAAAGTTTGGATATGTGGAGTTAGGTTCAAAGCTTGCTGCACCAGAATCTGAACACAGAAATATTAGTGCCAATGATTCTGTTCTTGAAATAAAGGTAGAAACAATGAGTGACTCGGAAGATATAAAACAAGATAATGAAAATATGAAGCAGGACAGAACTTTGAGTGATGAAGTGAAAGCTTACAAAGGCGATGAAGACTTTGATGTAACACTAATGGAGTTGATATTCTTACAGAAATGTTATTTTGATTACATAAACCAGACTTTGAATGATATAAACTTAAATCAAGTCCCTGAAATTTCTGACATTGAATATGAAAAAGCAAAATGTGACATTATGACCGACATAGATTGTTCTTTATGTAGAACAAAGCATCATACTATTGAAACGTTTATAACACACATGTATCGTATGCATAGTGTTAAATCTGTGCCAATTTTTTCATGCAGAGTATGTGCGACAACGTTTGACACTCAAAATGAACTGGAGTCTCATATACAAGATGAACTGGGTGATTTTGATGATTTGTGGATCTGTCAGTTTTGTGACAAAGAGTTTGATAACAGAGAATCATCGAGGCATCATTTGACAGAGCACTTGGAGATAATGGAATATGATAATTGTTTCAGCCCTCATTTGGGCTTCAAATGTAAATATTGTCCTACACTGTTCTGGAATGAGACTGATAGGGAAATGCATCAAGTCAGAGTGCATTTTAACTTGTACAAAGAGCATTATTATAAGTGTGTCACAGAAAGTTGCTCAGAGCTGTTTAGTGACAAGATATGGTTCATCCACCATTACCTCGAGAAACATCACAGTGATGAAGTCAAAGACCAGTACCTGCTCAAATGTTGCATTTGTTGCGTAGTGTTGTCCAGTGTGGAAGATATGAGAAACCATTTCTACAGTGAGCATCGTGAGGCGAGGAAGGTCTTCTGTTCGCTGGATGCCTGTCAGTATAAGCCGCTGAGTCATAAGAAGTCCTTCCAGTTGCATTTGAGGTCGCAACACAGTACGGAAGTTCGCAAAGAGCGCTCGGTTTCATGCAATATGTGTGGCCGAGACTTCCCGAGCACGCGCGCCTGTAGCGCTCACATGTCGCAAGTGCACGGCCCTGGCAAGTTCAAGTGCAAGTTGTGCAAGGAGAATCTGCACTCTTTGGACGAAAGGAAGCTGCACTACCTAATCCGGCACCCCGGGCACCACCCTTTCGAGTGCACGGACTGCGGCAAATCGTTCCAGTACAAATCCTCCCTCTACATGCACAGACAAGAGCATGCGCCCAACAAACAGAACTACACGTGTAATTACTGCCAGAAAGTGTTCGCGAAGAAGGACTCCTTCCGAGAGCATCTTCAAATCCACGAAGGCCCCCGTCACGCGTGCTCCTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGTCACGAACGGCGGCACACCGGCGAGCGCCCGTACGCGTGTCCACACCCGCAGTGCGCGCGCACCTTCTCAGACAAGGGCGCGTGCACTTCGCACGCCAGAACGCATTCAAAAGAGTCGTCGTACGCCTGCTTATACTGCGGGCAGACTTTCGTGCAGAAGTCTAAGCTGACCTACCATACCAGAAAGCATACTGGAGAAAACCTGGAGACATGCAACGTTTGCTCAAAAATGTTCACCAGTCCGTGCTCTCTACGGGAACATATGAAGGTGCACCAGCCAAAGACGAGGGAGTTAGTCAAGTGTCCTCTTTGTGACAGGAAGTACCAGGACGAGAAGTATATGCTTCGGCATCTGCGAACGTCCCACAGTTTCGGCCATTATTCCTGTCCACTGTGTGACAAGAATCTTACTCATGTGTCCGGGTTGAGACACCACGTCCTCACGCACAGTCCGCTCAATATCTTCCGGTGTAAATGCTGTCCGAAATCGTACGCAGTGAAGAAAACAGTGGTGAAACACTTGAGGAAACGTCACAACATAAAAGCGTCCAGCGTAAGGGACTACTACAAAAAGCTAGACCCGAGCGAGTGCCAACTGGGACTCGATGAGCAAACCTTGAAGAACATATTCGGACGACCGGTGAAGAAAGAAGTAAGCGATATCATCATAGGGGACCTCGCATCGTTCACAAAGACTTTGAAGTTAGCACAAAGCATTAAAGATGCTGATAACGATGATGTTGATGAAGAGAATGAAGAAGGCACGGATGATGATGAAAAGTCTGGTGAGGCTGAAAAGAGTGATGAAGACGTGAAGCCGGAGGTTAATCAAGACAGCGATGATAATATGAATGACAATGAGTTGGAGCCGACCGACTTTGTCAGTGTCAAGATTGAACCGATGGATGAAGAGGAACTAGAGAATGAGTGA
Protein Sequence: MASDESDDEPLSVLAAEKKLNPDKFVVPLPETEFVYEPKRKMRKISKRTRDSPYKKLPLTFKFSRKSLKNTLNTVIQRPADVWLYLKDLNPTGPYSCLLCTEWFINRSKVIMHYVLNHKKDFCGICRYFVPDRESWIAHLKFHTPWPCSQCVENFSSEIELRQHLSSAHKLVHCRLCHFRLPDNDQYNTHLFQKHNVTNVSSKYEEVLWELEYDNSPKFLCLLCAKSNNLSSTFFNHFMGFHHFTLKCFTNIISGRDTPFTVFGADVSPEFIESLKDQKFGYVELGSKLAAPESEHRNISANDSVLEIKVETMSDSEDIKQDNENMKQDRTLSDEVKAYKGDEDFDVTLMELIFLQKCYFDYINQTLNDINLNQVPEISDIEYEKAKCDIMTDIDCSLCRTKHHTIETFITHMYRMHSVKSVPIFSCRVCATTFDTQNELESHIQDELGDFDDLWICQFCDKEFDNRESSRHHLTEHLEIMEYDNCFSPHLGFKCKYCPTLFWNETDREMHQVRVHFNLYKEHYYKCVTESCSELFSDKIWFIHHYLEKHHSDEVKDQYLLKCCICCVVLSSVEDMRNHFYSEHREARKVFCSLDACQYKPLSHKKSFQLHLRSQHSTEVRKERSVSCNMCGRDFPSTRACSAHMSQVHGPGKFKCKLCKENLHSLDERKLHYLIRHPGHHPFECTDCGKSFQYKSSLYMHRQEHAPNKQNYTCNYCQKVFAKKDSFREHLQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACPHPQCARTFSDKGACTSHARTHSKESSYACLYCGQTFVQKSKLTYHTRKHTGENLETCNVCSKMFTSPCSLREHMKVHQPKTRELVKCPLCDRKYQDEKYMLRHLRTSHSFGHYSCPLCDKNLTHVSGLRHHVLTHSPLNIFRCKCCPKSYAVKKTVVKHLRKRHNIKASSVRDYYKKLDPSECQLGLDEQTLKNIFGRPVKKEVSDIIIGDLASFTKTLKLAQSIKDADNDDVDEENEEGTDDDEKSGEAEKSDEDVKPEVNQDSDDNMNDNELEPTDFVSVKIEPMDEEELENE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -