Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376322.1:12082273-12090544[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.011 0.71 10.8 4.9 1 23 305 327 305 327 0.99

2 11 0.0004 0.026 15.4 6.9 1 23 334 357 334 357 0.98

3 11 5.9e-05 0.0038 18.0 5.4 1 23 388 411 388 411 0.98

4 11 0.25 16 6.6 0.8 2 23 416 438 415 438 0.93

5 11 2.6 1.7e+02 3.4 0.4 2 20 452 470 452 472 0.94

6 11 0.0052 0.34 11.9 0.0 3 23 482 502 482 502 0.98

7 11 0.47 30 5.7 0.7 3 23 514 535 513 535 0.94

8 11 0.0084 0.54 11.2 2.4 1 20 554 573 554 576 0.93

9 11 0.00035 0.023 15.5 0.0 1 23 582 604 582 604 0.98

10 11 5.4e-07 3.5e-05 24.4 1.3 1 23 611 633 611 633 0.97

11 11 0.0015 0.098 13.5 4.0 1 23 639 662 639 662 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.011	0.71	10.8	4.9	1	23	305	327	305	327	0.99
2	11	0.0004	0.026	15.4	6.9	1	23	334	357	334	357	0.98
3	11	5.9e-05	0.0038	18.0	5.4	1	23	388	411	388	411	0.98
4	11	0.25	16	6.6	0.8	2	23	416	438	415	438	0.93
5	11	2.6	1.7e+02	3.4	0.4	2	20	452	470	452	472	0.94
6	11	0.0052	0.34	11.9	0.0	3	23	482	502	482	502	0.98
7	11	0.47	30	5.7	0.7	3	23	514	535	513	535	0.94
8	11	0.0084	0.54	11.2	2.4	1	20	554	573	554	576	0.93
9	11	0.00035	0.023	15.5	0.0	1	23	582	604	582	604	0.98
10	11	5.4e-07	3.5e-05	24.4	1.3	1	23	611	633	611	633	0.97
11	11	0.0015	0.098	13.5	4.0	1	23	639	662	639	662	0.96

Sequence Information

Coding Sequence: ATGTATGACCTATATTGCAAACTGTGTCTAGTGACCGACGTGAAGATGTCTAATATGAACACTTCGATTCTCAAAGCCTATTCTGAATGTATTCGATTGCCTTTATTCAACTGTGAAAATTATGTCTGCTATGAGTGTGAGGCATTACTACGGAAATATCAAGAGTTCCACTCTAGGTGCAGCAGAGCTCACAATATACTTACTGCCATAATAACGTCACACAACTCCAAGATAACTAAAGAATCTATCCAGGAAATAAATAGAAAACAATGTAATTTGAAGTCCAAACTAGCCCTGTCAGGCACTGGAGTACATTATTTGGGTCCACTAAGAGGTAATGTAAAGGAAGAAGAAAATTATTTTATAGATAAAATAAAACCTGAAATTGATCACCGACAGGACAACAAAGAAATTGATGATGTCAAAATAGAAATTAGTGATTGGATAGTAAATAAGAATGTATGTATAAAGTCTGACACAGATTCGGAATTTGGTGAACATATACCAGATTGTAATAATACATTCATAGAAGTTCCAGTTATAAATGAGACTGTACAAAACGTTAATAAGGAAAAGAAACGGAAACTTACAACAAGATATACAACATCTAAAATCAAGAAAAAGAAAGATAAAACAACAGTAACTAAAAATAAACGACAAAAGAAATCTTCAAGTGTTTTAAATGATAACCAACTTAAAAAAGTAAAAGTTGAAGTAAAGAAAGAGGAAGATATTTTAAGAAGTGAATCAGAAATTGATGTCACTGCAAAAAAGTATGTGTTAAGGGGCATTGGACCTAAATTTGAAGAAAGTTTCTTTGAGGGCTATGCTATTGTGAAATTGTTGACAGTAGAGGAAGCAAAGAATGAAGTTCTTCTCAGGAAAGAGTCTAGCAATTACACATGTAGCGCTTTCAAATGTGACTTGTGTTACAAGGGATGTGATTCCAAGAAAACGTTTGAGATTCATCAGAAGAAACATAGCTCGGAGTTCGGGCCATTTGAGTGTGAGTACTGCCACTTGAGGTTCACCACTCAGAACCAGCTCAGTTATCACTTAAGGAGGTGTCATATGCGCAAGTTTAGTTGCTTGTTCTGCTCGTATGTTTGCTTTGACACATTACAAGCAAAAATTCATGTCAGTGTCCATAAAGAAGGGTCGTTTGAATGCCAAGACTGCAATAAATATTTCAAACACTATCAAAGTTTGCAAGTGCACAGACGTACGAAGCACGCAGCAGACTGCGTATGTGAGCTCTGTGGCGGTACTTTTATGACTGAGCAAGGGCTCTCCTTACACAAGACGAAGTTGCATAGGCAGAAACTAGGAAAAAAGACTGAGCTGAAAGGACCAAAGTGCGAGGATTGTTGTGTGAAGTTCGCGTCGGAAACCGCGTGGAAGCGACATCTAGTGCTCTCTCCTAAACACGAAGTTAGCAATGGCTGCGAAGTGTGTGGCGAAGTATTTCTCGACAAGGCGGCTCTGAGAGCCCACACAAAGGGACATGTGAATTACGGTAGCAAAAAAGTACCTGCCGCCTGCCGTATTTGCGACAAATGGCTGAACAATCGCCGCGAATACAAGTCTCACATGACGTTACAACATCCGGTTTCTTTTGCCGCGAAGAGAGTCAAAGACGAAAGGAAATCCACTAAGAAGTACGTTTGCGAATTGTGCGGGGAATCATTCAAGGGGAAATGCTTCCTCCAATATCATCAATGGCGCCACACGGGCGTGAGCCCATACAAGTGCGGGATTTGTGGGGAAGGGTTCCCGGATCCGGGCGCGCGGTTCCGGCACGAGAACCGGCACGGCGACGGCGACCAGATGTTCCAGTGTGACGTGTGCCGGAAGACTTTTAACAAGAAGGGCAACCTCACTAGGCATATGGAGGGCCATCTGGGCATACTGCCACACAAGTGCCCCAGCTGTGATCACAGGTTCCGGTACGCGGGTGACATCAAACGGCATATAAAGTACACGCACGGCAAGATACCATGGCCGAAAGGCGACGGCAGTAGGCGGAAATCTAAGGAGATTAATACTGGAAAATTCCAGATAACTCCTTCTTGA
Protein Sequence: MYDLYCKLCLVTDVKMSNMNTSILKAYSECIRLPLFNCENYVCYECEALLRKYQEFHSRCSRAHNILTAIITSHNSKITKESIQEINRKQCNLKSKLALSGTGVHYLGPLRGNVKEEENYFIDKIKPEIDHRQDNKEIDDVKIEISDWIVNKNVCIKSDTDSEFGEHIPDCNNTFIEVPVINETVQNVNKEKKRKLTTRYTTSKIKKKKDKTTVTKNKRQKKSSSVLNDNQLKKVKVEVKKEEDILRSESEIDVTAKKYVLRGIGPKFEESFFEGYAIVKLLTVEEAKNEVLLRKESSNYTCSAFKCDLCYKGCDSKKTFEIHQKKHSSEFGPFECEYCHLRFTTQNQLSYHLRRCHMRKFSCLFCSYVCFDTLQAKIHVSVHKEGSFECQDCNKYFKHYQSLQVHRRTKHAADCVCELCGGTFMTEQGLSLHKTKLHRQKLGKKTELKGPKCEDCCVKFASETAWKRHLVLSPKHEVSNGCEVCGEVFLDKAALRAHTKGHVNYGSKKVPAACRICDKWLNNRREYKSHMTLQHPVSFAAKRVKDERKSTKKYVCELCGESFKGKCFLQYHQWRHTGVSPYKCGICGEGFPDPGARFRHENRHGDGDQMFQCDVCRKTFNKKGNLTRHMEGHLGILPHKCPSCDHRFRYAGDIKRHIKYTHGKIPWPKGDGSRRKSKEINTGKFQITPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -