Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376322.1:12151537-12163778[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.031 2 9.4 5.1 1 23 344 366 344 366 0.99

2 10 0.0038 0.25 12.3 0.8 2 23 373 395 372 395 0.93

3 10 0.17 11 7.1 2.6 1 23 399 421 399 421 0.97

4 10 6.8e-05 0.0044 17.8 0.7 1 23 427 450 427 450 0.98

5 10 0.001 0.066 14.1 0.1 2 23 458 480 457 480 0.95

6 10 0.029 1.9 9.5 0.0 3 20 492 509 491 511 0.95

7 10 0.0013 0.086 13.7 0.0 3 23 521 542 521 542 0.96

8 10 0.00074 0.048 14.5 0.5 1 22 564 585 564 587 0.90

9 10 4.9e-06 0.00032 21.4 2.1 1 23 592 614 592 614 0.98

10 10 0.0018 0.11 13.3 3.9 1 23 620 643 620 643 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.031	2	9.4	5.1	1	23	344	366	344	366	0.99
2	10	0.0038	0.25	12.3	0.8	2	23	373	395	372	395	0.93
3	10	0.17	11	7.1	2.6	1	23	399	421	399	421	0.97
4	10	6.8e-05	0.0044	17.8	0.7	1	23	427	450	427	450	0.98
5	10	0.001	0.066	14.1	0.1	2	23	458	480	457	480	0.95
6	10	0.029	1.9	9.5	0.0	3	20	492	509	491	511	0.95
7	10	0.0013	0.086	13.7	0.0	3	23	521	542	521	542	0.96
8	10	0.00074	0.048	14.5	0.5	1	22	564	585	564	587	0.90
9	10	4.9e-06	0.00032	21.4	2.1	1	23	592	614	592	614	0.98
10	10	0.0018	0.11	13.3	3.9	1	23	620	643	620	643	0.96

Sequence Information

Coding Sequence: ATGAACAATTTCAAATACTGTTTCTTGTGTTTGGCTACTGACGTTAAAATGTTTATCATGAACACTTCGATTCTCACAGTTTATTCGAGACTTCTTCAACTGTCTCTGTTTAAACATGAGCCCTACATTTGCTACGAGTGTGCAGCCTTATTACTGAAGTTTGATAAATTTTATGCTAAATGCCATCGAACACACGCGATACTCAAAGCGTTAATGTCATGTGATCCTAAGATAATTGAGGCAACTATTAGAAAAATGGACAGAAGTAAATTCAATTTGGAATCAAAACTGAAACTCTCTGATCCAGTGGTTCAGCTTCAACTGTCTGGATACTTTGATAATGAGCAAAAAGGACTTGCCTTATCAGAAATAAAAGTGGAGAGTGAAGAACAAAACCAAGATAAACAAGAAAAGGAAACAAATGAAGAAGTATACCAAAATGAACAAATAAGTGAAAGCAAATTGAATATAGAAGTACACAAAGATGAAAAAACAAGTGAAAGTGAAACATACAAAGAAGTATACCAAGATGAACAAATAAACAACATAAACAAAGAAATAAATCAAGATGTACAGATATGCATAAATGAAACTGTAAAGAGTCATGATTCTGAATGTATTGACATTGAATCAATGGAATATTTGTCAGATTCAAGTACAATAAATGAAATTTTTTCTCAGAAAAGTGCTGAAAAGAGCAAGAAGATTATTGAAATTAATGAAATGAAGCTTGAATATGATATCATAGATGCTTATACATCACTTAGAGATTTCAATGTTATACCATTAGTAAAACAAAAAATATCACCAAAAATTACAATCAAAGATGGAATAATAAATTGTGGTAATGCAGGGGCAATATCTCTCCATGTCACAAAACAAAAACATGTTGAGGTTAAAGAACAGAAAAATGTTCCCAATTTCGTTGAGAAGTACAAAGACTACGTAATGAGAGTGGAAATGACTCCTGAAGAGGCGAGAGAAGATGTTCTTCTCAGAAAACAGTCTGCGAACTACATTCAAGGGTTTTACAAATGTGACTTGTGTTGTAGAGGGTTTAAAGTGAAGTCTACTTTCGACAACCATATGAAGAAACATTCGTCGGCTTGGGCATTGGAATGTGAATACTGTAACCTAAGATTTAGCACCAAGGCTACTATAGACAGACACAAAATGAACAATCACACATACAAGTATATTTGCAAGATCTGTTCGTTTGTTTGCTATAGCTCGGCCCATGCAATATCACACACGAATCTCCATAAAGACGAGAAACAATATACATGCGAAGAATGTGATGCAAGTTTCAACGTGGCCCACAGTCTATACGTCCACAGACGTCGTATTCACAACACGGATGCTGGCGAGTGGGTGTGCGACATCTGCGGCAGGGTTTTTACATCGGAGCGTGGGATATTCACTCACAAGAATAAGGCACACCAACAAGAAACAAACGAGGAGAAAGGACCCAACTGCGAGGAGTGCGGCGTGCAGTTCGCGACGGAGACCGCGTGGAAGCGGCATCTAGTGCTCTCTACTAAACACGGAGTTAGCAACGGCTGTGAAATCTGCGGCGAAACATTCCCGGTTGTGAGCGCTCTAAAGAGCCACTATAATGAAAGTCACGCTCCCAAACAGAAAAGATGCTACTTCATGGACCATAAGTCTCAAGACGTAGGCGATCGTCCGCACAAATGCGAGGAATGCGGCAAAGCGTACGCTTCAATGATGACGCTGCGTCAACACAGAGTTGCTAGTCACAGACCCTCGCGGTACGAGTGCGACGTGTGCCAGAGACGCTTCAGCAGAAAGCATGCGCTCCAAATACACGTACAGCGTCACTTCGGGATCAAGTTTTACAAATGCCATCTCTGCGTCAAAACTTTCGTGCATCAGCGGGAAGTGAGGAGCCATGTGGAACGAATGCACAGAATCGTCCCGTGGCCGAAACAGAAAAACAAACCGAAACCGAATAGTGGAAAACCTGTGCCGAAAGGGAATCCTAAACCGAAAAGGAAACCTAAGCCGAATAGAAAACCTGGAAAGGCTGGCGTCTCTTAA
Protein Sequence: MNNFKYCFLCLATDVKMFIMNTSILTVYSRLLQLSLFKHEPYICYECAALLLKFDKFYAKCHRTHAILKALMSCDPKIIEATIRKMDRSKFNLESKLKLSDPVVQLQLSGYFDNEQKGLALSEIKVESEEQNQDKQEKETNEEVYQNEQISESKLNIEVHKDEKTSESETYKEVYQDEQINNINKEINQDVQICINETVKSHDSECIDIESMEYLSDSSTINEIFSQKSAEKSKKIIEINEMKLEYDIIDAYTSLRDFNVIPLVKQKISPKITIKDGIINCGNAGAISLHVTKQKHVEVKEQKNVPNFVEKYKDYVMRVEMTPEEAREDVLLRKQSANYIQGFYKCDLCCRGFKVKSTFDNHMKKHSSAWALECEYCNLRFSTKATIDRHKMNNHTYKYICKICSFVCYSSAHAISHTNLHKDEKQYTCEECDASFNVAHSLYVHRRRIHNTDAGEWVCDICGRVFTSERGIFTHKNKAHQQETNEEKGPNCEECGVQFATETAWKRHLVLSTKHGVSNGCEICGETFPVVSALKSHYNESHAPKQKRCYFMDHKSQDVGDRPHKCEECGKAYASMMTLRQHRVASHRPSRYECDVCQRRFSRKHALQIHVQRHFGIKFYKCHLCVKTFVHQREVRSHVERMHRIVPWPKQKNKPKPNSGKPVPKGNPKPKRKPKPNRKPGKAGVS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -