Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: pita
Assembly: GCA_947369225.1
Location: OX376315.1:8071464-8090045[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.3 85 4.3 0.4 3 23 216 237 214 237 0.90

2 10 0.0003 0.02 15.7 0.4 2 23 243 264 242 264 0.96

3 10 0.00043 0.027 15.3 0.5 1 23 270 293 270 293 0.95

4 10 0.0078 0.5 11.3 0.6 2 23 300 321 299 321 0.98

5 10 5.6e-06 0.00036 21.2 1.2 1 23 329 352 329 352 0.95

6 10 0.0025 0.16 12.9 0.6 3 23 360 380 358 380 0.97

7 10 0.00019 0.012 16.4 7.4 1 23 386 409 386 409 0.97

8 10 0.027 1.7 9.6 0.1 1 23 422 444 422 444 0.95

9 10 0.00055 0.036 14.9 0.1 2 23 450 471 449 471 0.97

10 10 0.00054 0.035 14.9 0.1 1 23 477 500 477 500 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.3	85	4.3	0.4	3	23	216	237	214	237	0.90
2	10	0.0003	0.02	15.7	0.4	2	23	243	264	242	264	0.96
3	10	0.00043	0.027	15.3	0.5	1	23	270	293	270	293	0.95
4	10	0.0078	0.5	11.3	0.6	2	23	300	321	299	321	0.98
5	10	5.6e-06	0.00036	21.2	1.2	1	23	329	352	329	352	0.95
6	10	0.0025	0.16	12.9	0.6	3	23	360	380	358	380	0.97
7	10	0.00019	0.012	16.4	7.4	1	23	386	409	386	409	0.97
8	10	0.027	1.7	9.6	0.1	1	23	422	444	422	444	0.95
9	10	0.00055	0.036	14.9	0.1	2	23	450	471	449	471	0.97
10	10	0.00054	0.035	14.9	0.1	1	23	477	500	477	500	0.95

Sequence Information

Coding Sequence: ATGGAGAAAAGAAAGGATATTTTGAGTGCAACAAAAGTGTGCCGGTTTTGTTTAGCGCAAAATGAACCACTACGGAGTTTATATGATAGAATCAAAGAGCCTAAAAATACAATTCCTCTTTCCTTGAAAATCTTGTCTTGTGTCTCTATAGAGGTGTTTCCATCAGATAGGATGCCCTCATATATTTGCAATCGCTGCAGGTTTTTCATGGATCTCTTCTATGGGTATAAACAGATTTGTCGGGATGCTGATGAGACCATTCTGCAGTATGTTCAAACTGGAACTGCACTGGAACCTATAGTTTGGTCACCTTCATTGACTAAAATGTTCCGCAGTGGGGCCAAAGATACCACTAATGTTGGAGTGATGAAGACAGTAGTAGAAGGAGGTGCAATGATTGAAGTCACCTCTCATGAGATGTCTGACAGTGAGGAGGGAGATGCAAATGTGTATAATGTAAAGATAGGAGAAGGGTCTAATGAGGGATCTACATGTATCAAGGTAGTAACTAGCAAAGACGATCAGCAAGATTCCAAGAAGAAATTGAAAGGATCTGATAAAGCATTAATAAACCATGGTCGAGATACGGAGATCGAGCTCGATAGAACGGTGTCAAGTCGAGGTCTAGTAGACGGGTGCTGGGCGTGCGACGAGTGCGAGTGTACCTACCCATTGCAACAGCTGCTCGAGTTGCACAAAGCGCAGAAGCACAGAGAAAGAACAGTGCCCTGCGACCAATGTGACGCTAAATTTTTCACGAAATATGATTTAATGACCCACCAATTACGCCATTCTGACGAGATGCCGTTTGAGTGCGTTGCTTGCGATAAGCAATTCAAACGGCTCGTGTTACTCAAGCGTCATGAGAGGTTGATGCATTCAGATTTAGTTCAACAGAAGTGTCCTCATTGTCCTGCTTCGTTTTTGTCTATAGACGAGTTTGAAGCGCATCAGAAGAGGCACACTCGCCATGGTGAGCGACCATTCGTCTGTACCGATTGTGATAAAAGGTTCCACGATAGATCAGCGCTGCAAAGGCACACAGACGTTGTGCACACGCCTAAGCCCGGGTTATTCTGCGAGTACTGTCCCGATCGATTTTCTTCCATGACAAAGTTGGCGAGACACGTTCGCACGCACGCCAGCGAGCGAGCGTACCCTTGTAAATATTGTTCTAAGACTTTCATAAAATCACATCATTACACCAGACATCTACGGCTGAAGCACCGCGACACGACCGGCCCGTTCAGTGTGACGGACCAGTACCGCTGCGAACAATGCGAGGACACGTTCGGGACGCAGGACGACCTCATCTACCACTCGGCGATCCACGCCACGCAGAACCTCACGTGCCCACTCTGCCAGGAGAAGTTCAAGAATGTCGATGCGGTCACAGCGCACATCAAGTCGCATGTTAACGGGGAGGAGTTCCAGTGTGATTACTGCGAACTAGTTTTTACTTCCAAAGAGAAACTCGACGGCCACATCAACGCCGTACATGATGATGAGATTCGACATCAACCCGAGCTGGGACTAAATGATTCTTCTATGGAAATTGACGCCGAGGAAGACGATGACGACAATACTATTAACTTAAAGGAAGAAGATGACCACATGGTGGTAGAAATTAAAAAAGCTGATGAATTTATGCTTCCCAACCTGCAAGCTGATCAGGAAGAAAAGATTGACAACACTAATTCTGAAGAGAGCGAATCCGAGGTTACATATACGGACTTGGCGACCGTGAACACCCTAGCGATCGTGAAGCAGGAAACGCTGTCGCCAACCAAGGCGCCACTTGTCGCGCCGGTCAAGCTGGCCGCTGCAACCTTCACACCCAAACTTATGTTTAAGACTGAAAAGAATATTCAGACTGCAAGCATACTGCGGAAAGCTGAAGAAATGAAACGGAAAGTAGTTCAACACCAGTCTCCTGATTCAATACAAGAGAAAAAAGAAAAACCTGCAAATAAAGTGGAAAGCAATAGTATCGGTGGAGCTAGTGACAAGTCCTTGCGTTTACTCGAGAAAGAGCTGCAGGAACTCAAAAGGACTACCTCTCGCAACGATGTGTCCAAGACTCCTTCAAAAACATCCGAAACTCTAAGGAGCAGCAGACGACCGCAGTTACATACTTCTTCGCCTAAACCGAGATTCACAGAAGAAAAGAAGCCTCAAACATCCCTCAGATCCTCGACTGTAGAGAAGAAAGTACCAGAGCGACGTGCGATCAAAGAAAACAAGGAGCCGAAAGAAGGCAAAGAGGCGGAATTTGCTAACGTAGTCGTCAAGAAAGAACGGGAAAGCAAGACTTCCAATCAAAATATCAAGGAAGAAAAAGATAAGGATGCAAAGGAAAACGATACTTCTATGATGAGCAACAGTGTAGTTAAAAATGGATCTGCTGATAAGAGCGGTGCGGAGGAAGGGGTTCGACGATCGACGCGGCCGTCTAAAGTCAAGGATTACGCTAAAATGATACGGGACAGGACACATGCAGAATCTGATGATGATTCGGAGGACGATGATGAGGAATACGTGGAGAATGAAAAGGTTTCAGAGAATCGTCCAAAAACGCGACGATCTAAGATTGAAGTGAGCTCGAAGCCGCAACCAAAGACGCCAAAATTAACGCCAGTCAGGAAACGAGGACGCCCGCGCAAGGACCAGCCCGCTGATGTACCTGCAAAAATCAAGAAAGATGACAATGAGGACGACGAGGATATCAAATCTGAAAAGGTTGAATCAGAAGAAAATTGCCAGTCTAAAGAGGATCCAGTTGCTGAGGAGAAAGCGGATATTGACACGGAAAATAAAACCAACTCGGACGATAGCAATAACGCGGATGGAAATAAGACTCCTAATCCTGAACAAAAGCCGTCTGCGGGCAGCATGTTGGTCTCGCCAACTGGACAAACTTTGAAGAAGGTGCCTATCAAAGCTTTGCCGCCGGGTGTCAAGCCTCTACCTTTACCGGCGAATGCTCGACCAATGGGCCCTGGAGAACTCTGCGAAATGCAAATAGGCAAGAAGGTGGTCAAAGTACAGAAGATCGTCATGACCAAGGCCGAGGTGGAAGCCATGGCGAAGAAAGGACTCGTTGAAATGAAGGATGGCACTATGGTGTTGAAGCAAGGCATAAAAATACCCACATCAGATCCGGTTGCTATCAAGTCAAGTCTAGTCGGAGAAGAAGTTGGAAAAGAATCTCCTAGCAAGAAAGACAAAGCGACGCCGACGCGCTGCGATCTCGGCGAAGAATCGTAA
Protein Sequence: MEKRKDILSATKVCRFCLAQNEPLRSLYDRIKEPKNTIPLSLKILSCVSIEVFPSDRMPSYICNRCRFFMDLFYGYKQICRDADETILQYVQTGTALEPIVWSPSLTKMFRSGAKDTTNVGVMKTVVEGGAMIEVTSHEMSDSEEGDANVYNVKIGEGSNEGSTCIKVVTSKDDQQDSKKKLKGSDKALINHGRDTEIELDRTVSSRGLVDGCWACDECECTYPLQQLLELHKAQKHRERTVPCDQCDAKFFTKYDLMTHQLRHSDEMPFECVACDKQFKRLVLLKRHERLMHSDLVQQKCPHCPASFLSIDEFEAHQKRHTRHGERPFVCTDCDKRFHDRSALQRHTDVVHTPKPGLFCEYCPDRFSSMTKLARHVRTHASERAYPCKYCSKTFIKSHHYTRHLRLKHRDTTGPFSVTDQYRCEQCEDTFGTQDDLIYHSAIHATQNLTCPLCQEKFKNVDAVTAHIKSHVNGEEFQCDYCELVFTSKEKLDGHINAVHDDEIRHQPELGLNDSSMEIDAEEDDDDNTINLKEEDDHMVVEIKKADEFMLPNLQADQEEKIDNTNSEESESEVTYTDLATVNTLAIVKQETLSPTKAPLVAPVKLAAATFTPKLMFKTEKNIQTASILRKAEEMKRKVVQHQSPDSIQEKKEKPANKVESNSIGGASDKSLRLLEKELQELKRTTSRNDVSKTPSKTSETLRSSRRPQLHTSSPKPRFTEEKKPQTSLRSSTVEKKVPERRAIKENKEPKEGKEAEFANVVVKKERESKTSNQNIKEEKDKDAKENDTSMMSNSVVKNGSADKSGAEEGVRRSTRPSKVKDYAKMIRDRTHAESDDDSEDDDEEYVENEKVSENRPKTRRSKIEVSSKPQPKTPKLTPVRKRGRPRKDQPADVPAKIKKDDNEDDEDIKSEKVESEENCQSKEDPVAEEKADIDTENKTNSDDSNNADGNKTPNPEQKPSAGSMLVSPTGQTLKKVPIKALPPGVKPLPLPANARPMGPGELCEMQIGKKVVKVQKIVMTKAEVEAMAKKGLVEMKDGTMVLKQGIKIPTSDPVAIKSSLVGEEVGKESPSKKDKATPTRCDLGEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -