Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376322.1:12165063-12178627[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.05 3.2 8.8 3.6 1 23 413 435 413 435 0.99

2 12 0.43 27 5.8 4.6 2 23 441 462 440 462 0.94

3 12 0.14 9 7.4 4.4 1 23 466 488 466 488 0.98

4 12 0.0011 0.069 14.0 1.3 1 23 493 516 493 516 0.94

5 12 0.0007 0.045 14.6 0.2 1 23 523 545 523 545 0.97

6 12 0.023 1.5 9.8 0.0 3 20 557 574 556 576 0.95

7 12 0.01 0.66 10.9 0.2 3 23 586 607 586 607 0.95

8 12 0.022 1.4 9.9 0.1 3 23 630 651 629 651 0.95

9 12 8.2e-05 0.0053 17.5 0.4 1 23 667 689 667 689 0.98

10 12 2.1e-06 0.00013 22.6 1.4 1 23 695 717 695 717 0.99

11 12 1.4e-05 0.00092 19.9 2.1 1 23 723 745 723 745 0.99

12 12 0.0022 0.14 13.0 4.2 1 23 751 774 751 774 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.05	3.2	8.8	3.6	1	23	413	435	413	435	0.99
2	12	0.43	27	5.8	4.6	2	23	441	462	440	462	0.94
3	12	0.14	9	7.4	4.4	1	23	466	488	466	488	0.98
4	12	0.0011	0.069	14.0	1.3	1	23	493	516	493	516	0.94
5	12	0.0007	0.045	14.6	0.2	1	23	523	545	523	545	0.97
6	12	0.023	1.5	9.8	0.0	3	20	557	574	556	576	0.95
7	12	0.01	0.66	10.9	0.2	3	23	586	607	586	607	0.95
8	12	0.022	1.4	9.9	0.1	3	23	630	651	629	651	0.95
9	12	8.2e-05	0.0053	17.5	0.4	1	23	667	689	667	689	0.98
10	12	2.1e-06	0.00013	22.6	1.4	1	23	695	717	695	717	0.99
11	12	1.4e-05	0.00092	19.9	2.1	1	23	723	745	723	745	0.99
12	12	0.0022	0.14	13.0	4.2	1	23	751	774	751	774	0.96

Sequence Information

Coding Sequence: ATGAGCAATTTAAAATATTGTTCCTTGTGTTTGGCGACTGACGTTAAAATGTTTACCATGAACACTTCGATTAACAAAGTTTATTCAAGACTTCTTCAGCTATCACCGTTTAAACTTGTTCCGTACATTTGCTATGAGTGTGCAGCGTTACTACTGAAGTTTGATGATTTTTACGCAAAATGTCATCAAGCTCACAATGTGCTGACGATCTTAAAGACACATAATTCTAAGTTAATCGACGAAGCTCTCAGAAAAATGGACAGAAAACAATATAATTTACAGTCAAAATTAGCACAGTCTCATGAAATAGTTAATCTCGAACTGCCTGGTGATTATAATAGTGAGCAGGATAATAATTCCTTCCTTGAAGTAAAAGTTGAAAACCAACATGAACAAGTAAACGAAATTGAATATCAAGATCAATGTAAGGAAGAAATTCTAATATCTGAAATAAAATTAGAAGAAGAATGCCAAGAACAGAACCAAGAATGCGAACAAGTATGTGACAGTTTACTAAATGAAACTGGAAATTGTAATGTGGATCCTGAATTTTTTGATAAACCAGTTGGGTATTTATTAGATTCCCCTATGCCTTCTGATGATTTGCGTTTCAAATCAGTGGAAGAAAGCGTATCTGAACAAAATTCCGATAAAATAAAATTAGAAGCTAATATCAAACCTAAAGTTGATAATAAAAAGTGTAAACCGATAGTAAAAAGAACAAGGATAAAGTTATCACCACTTCAAGATGCGGTAATAAATAGTAGTAAATCAGAAATAAAACTCACACAAGAAGAACAAATTAGCAAGACTTATAAAGATGAACAAATTGCAACACTAAAAGGTGGCAGTGATCTAGAATCAGTTGACTGTGTGCCTACTGCAGCTGAAGGTGATTTAAATGATAATGATAAGTCAGCAAAAAGAAAAAGATCATCAGAAATTGCTTTCAATGATGGAGTAATAAAATGTGGTACTGCAGCAGAAATATCTCTCTATGTGTCAAAGGTTGATTCCAGTAAAAATGTTGGAGATATCCTGCCTGCAACAGATGGGGTAATAAATACAGATAATTCAGAAATAAAACTCAAAAAAATTGGAAGAAATGTTAAAGGTGTTACTACATTCAATGCAGACTTGTACAAAGACTACATTACAATGGTGAAAATGACTCCAGAAGAAGCGAAAAAGGAAGTCATTCTCAGAAAAGAATCTACTAATTTCAGAATGAACACATACAAGTGTGATTTGTGCTGTAAAGGTTTTATAGCAAAATCTACCTTTGACAACCATATGAAGAGACATAAGACTGGAGACTTGGAGTGTGAGTTCTGTCATCTGCGGTTTTCTAAGAAGAATCTGAGCATACACGAAATGATGTGCCACATATACAAGTTTACTTGCAAGATCTGTTCGTTCGTTTGCTTTAACTCAAAACATGCATTGTCACACATCAATATTCACAAAGGCAAGAAATATTCATGCGAAGAATGTGGTTTAACTTTCAAAGTCCGCCACACAATGAACATCCACCGGCTCGCGAAGCATCCTAAGCGAGGGAACGAATTCATATGCGAATTCTGCGGAACCGTGTTCAACACGCTGCAAGGCTTATATGTCCACAACAGGGTACACCCAGAGGAAGTAAACGAGGGGAAAGGACCCAACTGCAAGGAGTGCGGCGTGCAGTTCGCGACGGAGACCGCGTGGAAGCGGCACCTAGTGCTCTCCACCAAGCATGTTGTAACCAACGGTTGTAAATTTTGCGGCGAAATATTCCCCACCGATATCGAGCTGCGGAGACACGCGAAGGAAACTCACAAATATAACAAATACAACAAACGTAGACATCTGTATTACAGAAAACCCAGAGAAGACCCCGCCGCGTGTGAAATCTGCAACCAACCTCTGGCTACCAGCAGCGAATACCGTTCGCATGTCACGTCAGAGCATCCTTTCTCCGACCTCGCGCGGAAAATCGACGCCGAACAGAAGAAGTTCATGTGCGAAATGTGCGGGAAAAGTTTCTGGACCAAATTGTTACTGATCGATCACCTACGTACCCATACGAACGAGCGCCCGTTCAAGTGCGCTGAGTGCGGAAAATCCTTCACCTCTAGCACCGGTTTATATAATCATAAGAATACGCACAGAGCACGGAACGAATACCAGTGCGATACGTGCAAGAGATTCTTCGCATCCAAGCCGACCCTCGACAAACATATGAAGACTCACCTCGGGATCCGTCCTTACAAATGCGATATCTGCGAAAAAACATTCATCAACGCGTGCGAAGTGAAGTATCACTTGAAACACACACATAACAAGGTGCCGTGGCCGAAACCGAACGGGAAACGCTCGGCTAAGGTCCGCGCTATGTTAGAGGCGCGAGCGGCGAGACAAGCGGACGCGGGCGCGGACGCGGGCGCGGGCGCGTCTGGCACGCGAGCAAATGTTTAA
Protein Sequence: MSNLKYCSLCLATDVKMFTMNTSINKVYSRLLQLSPFKLVPYICYECAALLLKFDDFYAKCHQAHNVLTILKTHNSKLIDEALRKMDRKQYNLQSKLAQSHEIVNLELPGDYNSEQDNNSFLEVKVENQHEQVNEIEYQDQCKEEILISEIKLEEECQEQNQECEQVCDSLLNETGNCNVDPEFFDKPVGYLLDSPMPSDDLRFKSVEESVSEQNSDKIKLEANIKPKVDNKKCKPIVKRTRIKLSPLQDAVINSSKSEIKLTQEEQISKTYKDEQIATLKGGSDLESVDCVPTAAEGDLNDNDKSAKRKRSSEIAFNDGVIKCGTAAEISLYVSKVDSSKNVGDILPATDGVINTDNSEIKLKKIGRNVKGVTTFNADLYKDYITMVKMTPEEAKKEVILRKESTNFRMNTYKCDLCCKGFIAKSTFDNHMKRHKTGDLECEFCHLRFSKKNLSIHEMMCHIYKFTCKICSFVCFNSKHALSHINIHKGKKYSCEECGLTFKVRHTMNIHRLAKHPKRGNEFICEFCGTVFNTLQGLYVHNRVHPEEVNEGKGPNCKECGVQFATETAWKRHLVLSTKHVVTNGCKFCGEIFPTDIELRRHAKETHKYNKYNKRRHLYYRKPREDPAACEICNQPLATSSEYRSHVTSEHPFSDLARKIDAEQKKFMCEMCGKSFWTKLLLIDHLRTHTNERPFKCAECGKSFTSSTGLYNHKNTHRARNEYQCDTCKRFFASKPTLDKHMKTHLGIRPYKCDICEKTFINACEVKYHLKHTHNKVPWPKPNGKRSAKVRAMLEARAARQADAGADAGAGASGTRANV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -