Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376311.1:11369112-11389310[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0034 0.22 12.4 4.7 1 23 101 123 101 123 0.98

2 11 0.0001 0.0066 17.2 0.6 1 23 129 151 129 151 0.98

3 11 6.6e-05 0.0042 17.8 1.7 1 23 157 180 157 180 0.96

4 11 0.036 2.3 9.2 3.2 1 21 186 206 186 208 0.94

5 11 0.00014 0.0092 16.8 2.8 1 23 214 236 214 236 0.99

6 11 2.7e-05 0.0018 19.0 5.5 1 23 242 264 242 264 0.98

7 11 0.0049 0.31 12.0 0.5 1 23 272 295 272 295 0.96

8 11 0.011 0.71 10.8 5.0 2 23 302 323 301 323 0.96

9 11 0.00012 0.0079 17.0 2.3 1 23 329 351 329 351 0.98

10 11 6.4e-06 0.00041 21.0 3.4 1 23 357 380 357 380 0.95

11 11 5.6e-07 3.6e-05 24.4 2.6 1 23 394 416 394 416 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0034	0.22	12.4	4.7	1	23	101	123	101	123	0.98
2	11	0.0001	0.0066	17.2	0.6	1	23	129	151	129	151	0.98
3	11	6.6e-05	0.0042	17.8	1.7	1	23	157	180	157	180	0.96
4	11	0.036	2.3	9.2	3.2	1	21	186	206	186	208	0.94
5	11	0.00014	0.0092	16.8	2.8	1	23	214	236	214	236	0.99
6	11	2.7e-05	0.0018	19.0	5.5	1	23	242	264	242	264	0.98
7	11	0.0049	0.31	12.0	0.5	1	23	272	295	272	295	0.96
8	11	0.011	0.71	10.8	5.0	2	23	302	323	301	323	0.96
9	11	0.00012	0.0079	17.0	2.3	1	23	329	351	329	351	0.98
10	11	6.4e-06	0.00041	21.0	3.4	1	23	357	380	357	380	0.95
11	11	5.6e-07	3.6e-05	24.4	2.6	1	23	394	416	394	416	0.97

Sequence Information

Coding Sequence: ATGCAGACTTTGCAAGAAGAGGAACCAATGATGGTGGAAGGCGAGGGCTACCAAACCGTCACCCTGGTGCCATCGGAGAACGGGCAGGGCGAAGTGAGCTACGTGCTCGTCGTGCAAGAGAACAAGCCTGTGGTCAACATTGACATCAAGGTGGATCAGGACGAGAAGGGCAACGAAGATGTGTACACTTTCGAAGAAGACGAGGACGAAGCCGGCGAGGATGGCTCCGAGGAGGAAGACGAAGTCACGCCCAAGCCCAAGCCGGTGACCGTCAAGCGCGGCAAATACCTGCGGCCGCACTTCCCATGCAACTTCTGCACATACACCAGCCACAGGCGATACCTGCTGCTGCGCCACATGAAGTCGCACTCGGAGGACCGTCCGCACAAGTGTGGCGTGTGCGAGCGTGGCTTCAAGACCATCGCCTCACTCCAGAATCACGTCAACATGCACAACGGCGTTAAGCCGCACGTCTGCAAGTACTGCAACAGCCCCTTCACCACCTCCGGCGAGCTGGTGCGGCACGTGCGTTACAAGCACACTCACGAGAAGCCCCATCGCTGCACCGAGTGCGACTACGCATCTGTCGAGCTGTCAAAGCTGCGGCGCCACGTGCGCTGTCACACCGGAGAGCGACCCTTCCAGTGTCCCCACTGTACGTACGCGTCGCCGGACACGTTCAAGCTGAAGCGTCACCTGCGCACGCACACGGGCGAGAAGCCGTACAAGTGCGAACACTGCAACATGTGCTTCACGCAGTCCAACTCGCTCAAAGCGCACAAGCTGATACACAACGTATCCGAAAAGCCGGTGTACGCGTGCGAGCTGTGCCCGGCCAAGTGCGGCCGCAAGACTGATCTGCGTATACACGTGCAGAAGCTGCATACATCCGACAAGCCGCTCAAGTGCAAGCGCTGCGGCAAGTCCTTCCCCGACCGTTACTCCTGCAAGATGCATAACAAGACGCACGAGGGCGAGAAATGCTTCAAATGCGAGCTGTGTCCGTACGCGTCGACGACGCTGCGCCACCTGAAATCGCACATGCTCAAGCACACTGACGAGAAACCCTTCGCTTGCGACCACTGCGACCAATCTTTTAGGCAAAAGCAGCTGCTCCGGCGCCATCAGAACCTATACCACAACCCGGACTACGTGCCGAAACCACCCAAGGAGAAGACGCACACGTGCCACGAATGCAACCGCACGTTCGCGCGCAAAGGGAACCTGATCCGCCACCTGGCCGTGCACGACCCCGACTCGGGGCACCACGAGCGCGCGTTGGCCCTCAAACTGGGCCGCCAGCGCAAGGTCAAGTTCATCGACGGACAGATGAAGATGATAAACGAGGATGACTCCGACGAGCCCGCGGACATCGTGAAACTGGGCATGACTAGCAACGAGCTGAAGCGAGGCGAGCTGGTGACGGTGGCGGACGGTGACGGGCAGCAGTACGTGGTGCTGGAGGTGATCCAGCTGGAGGACGGCTCCGAGCAGCAGGTGGCCTTTATGGCGCCTGAGTACATGGACTCCGACCAGGAAGACGAAGAAGATGAAGAGATAGTGGAGCGCAAGGAGGAGAAGGTGGCGATACACAAAGAGCAAGCGAAGCAGAAGGCTCTCGAGAAAAGTATCAAGCTGGAGAAAGATGTCGATACGTGCTTCGGCTTCGACGAGGAAGAGGAACCAGAAGAGGAAAATACCAATGAAAAATACGTTTTGAGCGTTTAA
Protein Sequence: MQTLQEEEPMMVEGEGYQTVTLVPSENGQGEVSYVLVVQENKPVVNIDIKVDQDEKGNEDVYTFEEDEDEAGEDGSEEEDEVTPKPKPVTVKRGKYLRPHFPCNFCTYTSHRRYLLLRHMKSHSEDRPHKCGVCERGFKTIASLQNHVNMHNGVKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHRCTECDYASVELSKLRRHVRCHTGERPFQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHKLIHNVSEKPVYACELCPAKCGRKTDLRIHVQKLHTSDKPLKCKRCGKSFPDRYSCKMHNKTHEGEKCFKCELCPYASTTLRHLKSHMLKHTDEKPFACDHCDQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHTCHECNRTFARKGNLIRHLAVHDPDSGHHERALALKLGRQRKVKFIDGQMKMINEDDSDEPADIVKLGMTSNELKRGELVTVADGDGQQYVVLEVIQLEDGSEQQVAFMAPEYMDSDQEDEEDEEIVERKEEKVAIHKEQAKQKALEKSIKLEKDVDTCFGFDEEEEPEEENTNEKYVLSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01091036;
90% Identity: -
80% Identity: -