Hpse008109.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hofmannophila pseudospretella
Gene Symbol
-
Assembly
GCA_947369225.1
Location
OX376337.1:2213423-2246094[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.025 1.6 9.7 3.8 2 23 83 104 82 104 0.95
2 16 0.00024 0.015 16.1 0.7 3 23 147 169 146 169 0.95
3 16 0.028 1.8 9.6 0.3 1 23 175 197 175 197 0.93
4 16 0.0015 0.098 13.5 3.3 1 23 203 225 203 225 0.98
5 16 0.26 17 6.5 0.0 2 21 236 255 235 256 0.92
6 16 0.032 2.1 9.4 0.3 1 23 335 357 335 357 0.96
7 16 1.8 1.2e+02 3.9 7.0 1 23 364 386 364 386 0.95
8 16 0.00097 0.063 14.2 1.8 1 23 429 452 429 452 0.95
9 16 0.00031 0.02 15.7 0.4 2 23 460 482 459 482 0.96
10 16 0.0027 0.17 12.8 0.2 2 23 505 527 504 527 0.96
11 16 0.019 1.2 10.1 1.7 3 21 546 564 544 566 0.93
12 16 0.0048 0.31 12.0 0.9 3 23 573 594 572 594 0.95
13 16 0.00019 0.012 16.4 0.3 1 23 600 622 600 622 0.98
14 16 0.00035 0.023 15.5 1.4 1 23 628 650 628 650 0.95
15 16 5.2e-05 0.0033 18.2 0.1 1 23 656 678 656 678 0.97
16 16 0.00027 0.017 15.9 0.7 3 23 686 707 684 707 0.95

Sequence Information

Coding Sequence
ATGAAACTCCATAGCCAGCTCTTCACGTCGGCGGACAATCTAGCGGCCCACAAGTGTCGCCGCCGCGGTCGCAAGCGCAAGTCTCTGAGCAAAGATGACTCTGCTATACGAATGCCTTCTAAAGAGGACTTCATGAAGAGGGCTCAGGGAAGGCCCAGACATGATAAGCCTGGTTTCAAGGATTTACTGACAGTGAAAACTCGCAAACGGAGGAACAAGCAGCCGACTTCAGACCCTCAAATCGTAACTTGTCACAACTGCAATGAGTCCTTTACTTCAAAAGTGCGTCTCAAGTTTCACATGCAATTCCACGACTCAATAAACATGCTGACCCCCGACGGGCAGTACGCATGCGCGGAGTGCGACAACACGACGCTCGGCACAGAGACCGAGCTGTTCGACCACGTGCACTTCCAGCACAAGCAGAAACGATGGCTGTGCCCTCTGAAGGGGTGTGGCAAGACCTTCTACCTGAGGGCTACCCTGACGAAGCACAGCCGCACGCACACAGACACGCGGCGATACGCGTGCACCACTTGCGGCAAACGCTTCCTCGACAAACAGACGCTGGACGAGCATGGCGTCACGCACCTGCAGATAAAACCGTTTCAATGCCACATCTGCCTCAAGCAGCTGACGCGAAGGTCTCGGTTGAGGATGCACCTTCGAGCTCATGAGGAAGAGCTCTGTCCAAGACTGGTGCTGGTCTGCGCTGTATGCAGCCGAGCCTTTAGGGGCGCTGCGGATGTCCAGGATCATATCACCAGGTCGCCAGAATGTATAGAAGAGTTCGCAAACGAATTGAAGGAAGAAACCGAGTCCGTTACAGTCCAGCTGTCTCCCACTAGTGGGCTGGTGAGACATACAGTCCAGGTTATTGAGTCACCGAAGCTGTCGAAGCCGATCCGTCGTCAAGTGGACGGCGCGGAAGCTGAAGCCCTTCTGTGTCAAGTAGCAGACGAGGCTCGCGGCATCATTCGCGTCGTGGAGGTGGAGAAGGCGTTCCGCTGCGAGTTCTGCGAGGACGTGTTCTACACCGAGGACGGCCTGAACACCCACCGCGTCATACACAAGGGTGTAAAGAACCCGTTCACTTGTCACATCTGTAAAGTGAGCTTCGCCAGCTATTCTAGATGCACCACCCACAAAACGACGCACGGTTTCTACAAGCGATCTCTAGCCGACGCTAAGAAGCAAGCGGAGATGTCACCCAACAGCAAGCAGGAGGTCGGGCCTTCGTCCACCGGCATCCTCGGCTATGGGGACTTTCCAGTCGTCAAGCACTTTCTGTGCGAGGACTGCGGCCGCTCGTACCTCCACTGGACGTACTTACAAGTCCACCGCCGTATGAAGCACGCGGTCGAAAGCTACAAGCTCAAGTGCGGACAGTGTGACCAGACCTTCCCTAACAGCTGGGGCCTCACTTACCACAGGAAGAAGGCGCATGGGACCAAGACCTGCTCTGATGACGTCATCGTCACCGCTAAGGCCAGCAAAGATGATTACAGGATACCATGCCGAGACTGCGACGAAGTCCTCCCCAACAAGACAGCATTATACAAGCACAGGAAGAAGGAACACAGCGACATATCTCTCCGTATGAACAGCAAGCCTGGCGCTTCTGGGGTGTTTTGGTGCGGCACCTGCGACAAGCAATACAGCAGTCGATCAGGATTGGAGGCGCATTCCCGCTGCCACACCGCGCGCGCCGCCGCTTGCGCCAAGTGCGGCCATAGCTTTCCTAACGTGGCAGAGCTACATTCACATCTCAAACAAGTGCACGGCCCCGAGCTAGACTTCCCGTGCGGTGTGTGCCGCAAGCCGTTCTGCTCGCGCGCCGAGCTGGCGGTGCACAGCCGCGTGCACAGCGCGGCGCGCCCGCACGCGTGCTCGGCCTGCGGGCACGGGTTCCGCACGCTGTCCATGTTAAATGAGCACCTGAGGATACATACGGGAGAGAGGCCGTTTCCGTGTGACGTGTGCGGGATTGCTTTCAGACGTTCAACAGCGATGCGCAACCATCGTCTGATTCACACGGGCGAGCGCGCCTGGGCGTGTGGCCGCTGTCCCAAGCGTTTCCGCATCCGGTCGGATCTTCGCACGCATTTACGGCTGAAGCATCCAGCACGCCTCGTGCTGCTAGAGGTGCCGGGCCTAAACCCTTCCCCCGAAGAAGTGATGAAACACCTCACGATGAACAACATACCGCATGATAAAATCCTTGAGATTACCAAAATGTCCTTCCCGAAGGGTACGTCCAGTATAGTGCCGACCACTTCCCGCGCCCTGTCGATGTTGTCGCAAGTGCCTCGCACACAGATCGCGTGCAGCAGCTCCCGCCCAGATACTAGTTACGAGTTATTCCAACCGGCTCGCCGCGGTCGAGGCATCGCTAAGAATCCCAGGAAACCTCCTTCCAGGCTTCTTCAGGGGGAGAATGTCCAGATGGATTCCAGCGCGTATCCGATAGCTATATCTGTGTCCAGCGAACATGGAGCAGACGATGTACCACAAGAGTCCATGGCTTACCCCATAGCTTTGAACATTGCTGGGGCGCACGGATCTGCTAATGGAAACCAACAGGACCCCATCGCGTACCCCATAGCTGTGAATGTCTCCGGCGAAGATCTTTCGGAGTTGAACGTACAACTGCTTCTCCGCGACGGCGTGCTGGTGAACGGCAACCAGATGGTGCAGCTGGAGCTGGACGATACTATGTTAGAGTGA
Protein Sequence
MKLHSQLFTSADNLAAHKCRRRGRKRKSLSKDDSAIRMPSKEDFMKRAQGRPRHDKPGFKDLLTVKTRKRRNKQPTSDPQIVTCHNCNESFTSKVRLKFHMQFHDSINMLTPDGQYACAECDNTTLGTETELFDHVHFQHKQKRWLCPLKGCGKTFYLRATLTKHSRTHTDTRRYACTTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHLRAHEEELCPRLVLVCAVCSRAFRGAADVQDHITRSPECIEEFANELKEETESVTVQLSPTSGLVRHTVQVIESPKLSKPIRRQVDGAEAEALLCQVADEARGIIRVVEVEKAFRCEFCEDVFYTEDGLNTHRVIHKGVKNPFTCHICKVSFASYSRCTTHKTTHGFYKRSLADAKKQAEMSPNSKQEVGPSSTGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHAVESYKLKCGQCDQTFPNSWGLTYHRKKAHGTKTCSDDVIVTAKASKDDYRIPCRDCDEVLPNKTALYKHRKKEHSDISLRMNSKPGASGVFWCGTCDKQYSSRSGLEAHSRCHTARAAACAKCGHSFPNVAELHSHLKQVHGPELDFPCGVCRKPFCSRAELAVHSRVHSAARPHACSACGHGFRTLSMLNEHLRIHTGERPFPCDVCGIAFRRSTAMRNHRLIHTGERAWACGRCPKRFRIRSDLRTHLRLKHPARLVLLEVPGLNPSPEEVMKHLTMNNIPHDKILEITKMSFPKGTSSIVPTTSRALSMLSQVPRTQIACSSSRPDTSYELFQPARRGRGIAKNPRKPPSRLLQGENVQMDSSAYPIAISVSSEHGADDVPQESMAYPIALNIAGAHGSANGNQQDPIAYPIAVNVSGEDLSELNVQLLLRDGVLVNGNQMVQLELDDTMLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-