Hpse012212.1
Basic Information
- Gene Symbol
- znf711
- Assembly
- GCA_947369225.1
- Location
- OX376328.1:11030028-11031428[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00028 0.018 15.9 0.1 2 23 147 168 146 168 0.97 2 11 0.007 0.45 11.5 1.1 1 23 174 197 174 197 0.95 3 11 9.1e-06 0.00058 20.5 0.8 1 23 204 226 204 226 0.98 4 11 3.7e-06 0.00024 21.8 0.3 1 23 232 254 232 254 0.98 5 11 7.5e-07 4.8e-05 24.0 0.8 1 23 260 282 260 282 0.98 6 11 0.00023 0.015 16.1 2.4 1 23 288 310 288 310 0.97 7 11 6.9e-06 0.00044 20.9 0.3 3 23 318 339 317 339 0.97 8 11 0.0062 0.4 11.6 0.7 2 23 345 363 344 363 0.84 9 11 0.00094 0.06 14.2 1.3 1 20 369 388 369 392 0.90 10 11 0.029 1.9 9.5 0.6 1 23 398 423 398 423 0.93 11 11 2.5e-05 0.0016 19.1 2.8 1 23 429 452 429 452 0.97
Sequence Information
- Coding Sequence
- ATGGATGTATGTCGGATTTGCCTGAACAAAACTGCCACAGTTTCTGTGTTTGCTAAAGAGAACGACATTCAACACAGTACGAAGATCATGAGGTGTGTGAACGTGGTTATAACGGAGGAGGACAGTCTGCCGAAAATGATCTGCATCAGCTGTGTGAGTGATTTGTCTGTTTCCTATGAGTTCGTGAACAAATGCGAGGCTTCGGACAGAACCCTGCGGTACACCGCAGGGTTCGACGTCGACGACGAACTGTATGCAGACCTCGACCCCAAACTAGATATAGTCATCAAAGACGAAGACATCAAAAGAGAGCTCGAAGAACATTATGATAACAATTTCTTATTAGACGATCTAAAAGACTTCCCAGAAGAAGAAACTAAACCTAAAAAACGGGGAAAGTATAGAAAAAAAATGAAAAGGTCCAAAATGGGGCCGATACAGTGTGTCATCTGTGGCCTCATGGTCATCAGCCGCTCAGCCATGTCGACCCACATGCGTACTCACACTGGAGAAAAACCATTTCATTGTCAGTCATGTGATGCACGATTCCCAGCAAAAGGTGCTCTGAAGAGACACACAGTAACATACCACTCTCAAAGGGAACGCAAATTCACCTGCGAAACTTGCGGCAATAGCTTCTTCACTAAAAGTGATATTATTACCCATATGAGAATACACACGGATGAAAAGCCATACATCTGCCCGTACTGCTCGAGACCGTTCCGTCAGATAGCTTCACTGATCCGCCATAAGAGAGTTCACACCGGAGAAAAACCATTTTCATGCCCCATATGCGATAAAAAGTTCTCCGACAAAAACTTAGTTAAGAAACATCAATTAGTACACAGCGATGAGAGGAAGTACAGCTGCCATCTTTGTAGCAAATCTGTGAAGTCTAAAACAGCTTTAAATACACATTTGAGTCTCCATTCAAATGAGAAACGAAACATTTGCAGCTTTTGTGGAATGGCTTTCTCAATGAAAGGCAACTTGCAGACTCACATACGAAGAGTCCATTCTGAAAAGTCTGGCCAATGTTCAGTATGCTTGAAAACTTTCTCAGATCTCGAGGAGCATATGCGCAAACACACGGGAGAAAAGCCATTTGTATGTGGAATGTGCACACAAGCATTTGCAACTAAACGGAGTCTTACACACCACGTGGTTTTCAAGCATGAGAATACATCAAAATTCAAATGCTCCATAGGAGACTGTTCTAAAACGTTTCCTACAACAATGATGTTAGAGTTCCATCTTCTCAAGCAACATACAAATCACACTCCGTACATTTGCCAGCATTGCTCTCGAGGTTTCTTCCGTAACAGTGACCTGTCCCGCCACCTCAAAGTTAGCCATATGGAAATGCAAATAAGGATGCCATTGAAGGCTGTTGATTCCTAG
- Protein Sequence
- MDVCRICLNKTATVSVFAKENDIQHSTKIMRCVNVVITEEDSLPKMICISCVSDLSVSYEFVNKCEASDRTLRYTAGFDVDDELYADLDPKLDIVIKDEDIKRELEEHYDNNFLLDDLKDFPEEETKPKKRGKYRKKMKRSKMGPIQCVICGLMVISRSAMSTHMRTHTGEKPFHCQSCDARFPAKGALKRHTVTYHSQRERKFTCETCGNSFFTKSDIITHMRIHTDEKPYICPYCSRPFRQIASLIRHKRVHTGEKPFSCPICDKKFSDKNLVKKHQLVHSDERKYSCHLCSKSVKSKTALNTHLSLHSNEKRNICSFCGMAFSMKGNLQTHIRRVHSEKSGQCSVCLKTFSDLEEHMRKHTGEKPFVCGMCTQAFATKRSLTHHVVFKHENTSKFKCSIGDCSKTFPTTMMLEFHLLKQHTNHTPYICQHCSRGFFRNSDLSRHLKVSHMEMQIRMPLKAVDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -