Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376315.1:12925806-12935122[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 4.3e-05 0.0028 18.4 3.2 1 23 201 223 201 223 0.98

2 29 0.004 0.26 12.2 3.1 2 21 254 273 253 274 0.93

3 29 4.5e-05 0.0029 18.4 0.2 2 23 311 333 310 333 0.96

4 29 0.0014 0.089 13.7 0.6 2 23 386 408 385 408 0.95

5 29 0.0012 0.076 13.9 0.1 1 23 424 446 424 446 0.96

6 29 1.7e-05 0.0011 19.7 2.5 1 23 485 507 485 507 0.97

7 29 0.0032 0.2 12.5 1.8 2 23 545 567 545 567 0.97

8 29 0.00051 0.032 15.1 0.2 1 23 617 640 617 640 0.97

9 29 0.0023 0.15 13.0 2.3 1 23 698 720 698 720 0.97

10 29 0.001 0.067 14.1 2.3 2 23 732 753 731 753 0.96

11 29 0.0032 0.21 12.5 0.2 2 23 765 786 764 786 0.96

12 29 0.01 0.66 10.9 2.2 1 23 796 818 796 818 0.98

13 29 0.02 1.3 10.0 4.6 1 23 846 868 846 868 0.97

14 29 0.023 1.5 9.8 4.7 1 23 879 901 879 901 0.97

15 29 8.4e-05 0.0054 17.5 0.5 1 23 909 931 909 931 0.97

16 29 0.00037 0.024 15.5 0.2 2 23 951 973 950 973 0.97

17 29 0.32 21 6.2 1.5 1 23 991 1013 991 1013 0.92

18 29 1.8 1.1e+02 3.9 4.5 1 23 1020 1043 1020 1043 0.91

19 29 0.21 13 6.8 4.0 2 23 1054 1076 1053 1076 0.95

20 29 0.026 1.7 9.7 0.4 1 23 1098 1120 1098 1120 0.96

21 29 9.1 5.8e+02 1.7 5.9 2 23 1163 1185 1162 1185 0.94

22 29 0.00081 0.052 14.4 0.5 1 23 1200 1222 1200 1222 0.96

23 29 3.7 2.3e+02 2.9 3.8 5 23 1232 1250 1229 1250 0.94

24 29 0.017 1.1 10.3 0.9 2 23 1261 1283 1260 1283 0.95

25 29 1.4 87 4.3 4.6 2 23 1300 1318 1300 1318 0.88

26 29 0.86 55 4.9 1.8 2 21 1322 1341 1322 1342 0.92

27 29 0.2 13 6.9 0.5 2 23 1393 1414 1392 1414 0.93

28 29 0.046 2.9 8.9 0.6 2 23 1425 1447 1424 1447 0.95

29 29 4.3 2.7e+02 2.7 2.9 2 21 1485 1504 1484 1505 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	4.3e-05	0.0028	18.4	3.2	1	23	201	223	201	223	0.98
2	29	0.004	0.26	12.2	3.1	2	21	254	273	253	274	0.93
3	29	4.5e-05	0.0029	18.4	0.2	2	23	311	333	310	333	0.96
4	29	0.0014	0.089	13.7	0.6	2	23	386	408	385	408	0.95
5	29	0.0012	0.076	13.9	0.1	1	23	424	446	424	446	0.96
6	29	1.7e-05	0.0011	19.7	2.5	1	23	485	507	485	507	0.97
7	29	0.0032	0.2	12.5	1.8	2	23	545	567	545	567	0.97
8	29	0.00051	0.032	15.1	0.2	1	23	617	640	617	640	0.97
9	29	0.0023	0.15	13.0	2.3	1	23	698	720	698	720	0.97
10	29	0.001	0.067	14.1	2.3	2	23	732	753	731	753	0.96
11	29	0.0032	0.21	12.5	0.2	2	23	765	786	764	786	0.96
12	29	0.01	0.66	10.9	2.2	1	23	796	818	796	818	0.98
13	29	0.02	1.3	10.0	4.6	1	23	846	868	846	868	0.97
14	29	0.023	1.5	9.8	4.7	1	23	879	901	879	901	0.97
15	29	8.4e-05	0.0054	17.5	0.5	1	23	909	931	909	931	0.97
16	29	0.00037	0.024	15.5	0.2	2	23	951	973	950	973	0.97
17	29	0.32	21	6.2	1.5	1	23	991	1013	991	1013	0.92
18	29	1.8	1.1e+02	3.9	4.5	1	23	1020	1043	1020	1043	0.91
19	29	0.21	13	6.8	4.0	2	23	1054	1076	1053	1076	0.95
20	29	0.026	1.7	9.7	0.4	1	23	1098	1120	1098	1120	0.96
21	29	9.1	5.8e+02	1.7	5.9	2	23	1163	1185	1162	1185	0.94
22	29	0.00081	0.052	14.4	0.5	1	23	1200	1222	1200	1222	0.96
23	29	3.7	2.3e+02	2.9	3.8	5	23	1232	1250	1229	1250	0.94
24	29	0.017	1.1	10.3	0.9	2	23	1261	1283	1260	1283	0.95
25	29	1.4	87	4.3	4.6	2	23	1300	1318	1300	1318	0.88
26	29	0.86	55	4.9	1.8	2	21	1322	1341	1322	1342	0.92
27	29	0.2	13	6.9	0.5	2	23	1393	1414	1392	1414	0.93
28	29	0.046	2.9	8.9	0.6	2	23	1425	1447	1424	1447	0.95
29	29	4.3	2.7e+02	2.7	2.9	2	21	1485	1504	1484	1505	0.93

Sequence Information

Coding Sequence: ATGGCCCTCAAGCTGGGAAAATGCAGACTCTGCTTGAAGCTCGGCGACTTCTATTCCATATACACGATGGATAACGCCATTCTGCTCTCGGAAATGGTGATGGAATGCGCCCGGGTGAAGATATATGAAGGAGACGGACTACCTGAGAAGATCTGCTCAGAGTGCATCCAGAAACTGAGCAGCGCATACATCTTCAAGCAGCAGTGTGAAAGATCAGACCAGGAGTTGAGGAGGAACTATGTACAGCCACCAGGATTTAGCATCTCTCCGCCGCCTCAGAATCGGCAAAGCAGCGATTCCGCCTTCTCGTCAGCCCACACCGACATATCCCTTCAGACCAAACCCTCGTCCGCCGAGAAATCCACTCCGGCCAAGAGGAACCGAAAGCGAAGTCACGAGAGCATCGACAATGCCTCCGTCAGCAGCCAGTCGCACGAATACCGCCCGTCTAGCTCGAAACGTGTTGAAGAACTACGGCATTCAAGGAAAAAAGCTCGAAACCGTTCGCCTAACGCTTCTCTAATGGATTCCGACTATGAAGACAACAGCATCTCACATTTCTCTGCTGAAACTGACTCGGATGAACCGCTCCTGCACACCTACAAATGCAAGCTCTGTCCGAAGGAGTTCAGAACGCATGCGAGCCTAAGACAGCACAATAGAATACATTCCAGAGAGAAATTGGGTGAAAACGCTCTTGTCGATATCCCGGCGGGTAGTCAGAAAAATAATGATGCTACAGATGAGGACGACAAACTGAAGTGCAAGAAATGTTCGAAGACATTCAAGTTGAAGATCATGCTGAAGCGACATCACGAAACATGTGGAAAGACGCAAAAATTATCCCCTCAGAAGGAGTTGCTCATAACCTTAGAACCAATAGATGCGGTGCTTAATAAAGAAACAGAAAAAAAAGAGAGCAGAAAAATCGAATGCGAAATGTGCACAGTCAGGTTCAAAACTATTGAGAATCTGGAGAAACACATGAGGGTCGTCCACGCGGCGGTTTTGAAGAAAAACCTGAGGGCTTTAGAGAATAAGGAACCAGGAAAGCTAGCTATTCCTTGCCTATTCTGTCACACAATGTTTGATGATTTCTACGTCCACTGCGCTCATTTCTCGTCGTGCTCGAAACGGAACGATTCCAAGGTTTTGCAATGTCCCATTTGCAATCGGGTTATGTCCAATAAGTCGTCATACTTCACTCACCTCAAGAATATCCACTTCTGGCCGAGAGAAGGGAGCAAACCGATAGAAAGGAAGAAAGGGTTTGAATGTCGCATGTGTGGGAAGAAGCTCGCGTCTCAGGACTTGCTAATCACACATCTTGCGGCGCACATGACAAATAGTGAAGATGCGGATGAGGCTGATAACGATTCCAGAGTGACTCCGGTAGAAGACAACACATCTATCAACTCCGAATACAGTAGCCCTGCTAGTGGCTCAGGTCCTCACAAATGCGAGATCTGCGGAAAAGGTTTCAAGTACAAGAAGGCACTCCAAACCCACGTCTCCAAGCATTCCCAAGCAGAAATCAAGTCTGAACCCCCTGACAAACCTTCCACGAGTCTTTTAGACGAAACCTACCCGGAATCGGAGTCAGATTCTAGTCCTGGAGAAGGGGAAGACAATACTTGCGACATATGTGAGAAACAATTCTCGTATAAACGTGTCTTGATCCAACACAAGAAGACGAAGCACAACATGAGCTCGGGTACGAAGAGAGCAAAGATTAACCTGAAAGACTGTTCGGTCCGCTGTTTGATCTGCGATACGGAAATGAAAGTGTCTGCCATCAACGAGCACAATCAGAAACATATTTCAGCGAACATGAAGCCTCGAAACCAGTACACTTGTGCTGAATGCGGGGAGCAGTTTAAAGCCTGCAGCGCTTTAGCAAATCACATCAAGCTGATCCATCGCTTGAAGCAGACTCCGATGCCGACTCCGCAGCAGTTCGAGGGCGCGGATCTGGCGGATTTTTGTGAAGTCGTTGTGACGAAAGCGGAACCCCTGGACGAGCTCCAGAGTCACAACGGCTTTGGCGAGGTTCCGGTCACGAATGCGGGCGCGGTGGTGGACCTGGCCGGGTTCACGTGCCACTTGTGCGGCAAGAAGATGAAGACCCTCATCTCATTGAAGCGACACGTCAACTGGCACGAGAATGTCGGCAATAACCTGGAGAAGAACATCGAGTGCTTTGTCTGCAAAGAGACGTTCCGCTTCCAAGTCCATTACCGCCTTCACATGCGGGAGCATTACACTGACACCAACCTCGACCCCAAGCACCTCACTTGCCCCATCTGCGGCCGCCGAAGCAAGAACCTTCGCGCCGCCAAGGCTCACATGAACTTCCACAAGCAAACCCGCTTCAAGAACAAAGACTACCAGTGCTCCATCTGCAAACGAATCTTCCAACACCGAAAAGTCTACCTCTCCCACATGGCTATACATTACAAAAGAGGAGAAGGTCAGAACATGATAGTAGGAGATATAGTCCCGAATAATATTGATAAGACTGCTTTCGATGGCACTCATACTTGCCCGCAATGTGGCAAGGTATGTGACTCTGAGAATTCCCTCAAATGTCACATAAGGTGGCACACCTCCAAGTCTTCATTATACGGATCTAGGCATGAGTGTATGGTTTGCCATTTACAATTCACAAACAAAAGACGATTGGAAATCCACACGAGGTCTCATTTCGAAGATGAGAACGGACCCTTCAAATGCTCGATCTGTGGCAAAGGATACATCGATGAGGAATACTTCAGAAAACACGTGAAAGGACACAACTTTGATCATCAATCGCATAAGAAGCGTTTGGAGAAACTTAGAAAGGATAAAGTGAAATGTCCAATCTGTCCTCGCTTCTATCCGGACATGGTAAAACTCATCCGCCATTTGAGGAGGACCCATCCGGAAAGTAAGATGATTAAACAGGATCCTGATGCTCCGCCACAACAGTACTACTCGTGCAAACTGTGCACGAAAGTATTCCTAGACGAAAGGAGGTTGCAGCATCACGAGGAAGCTCACTTGAGGAAGCCAGAGTTCTTCAAATGCAAATTCTGCGGAAAGAATACTGTATCGCTAAAGAATCACAGACTCCATGTGAAACAATTTCATTTGACGAGGAATTATAGGGATAATCCACTGAAATGCCCTCATTGTGATGACAAATTCATTAAAGGCTACAGCTTGCATCACCATTTGCGTGATGCTCACGGAATCGAGGAGGAATGGATAGCTGAACGGACGGATAAAACCCTCGAGGGTCCTCTAAAAGAGTTCCAATGTTCCATTTGCCTCAAACTACTCGCCAGCAAAGGCAACTTTGAACGACACGTGGACTATCACAATTCGTTGAGATGTAACTACTGCTTTGACTACTTCAGTAGCCTGAAGTTCCTCGAAGGTCATCTAGCGTTCAGCTGCGACAAGAAAAAACTAATTGGCGACACGGAAACGTACCCGAAGAAAGTGAAATGCCATATTTGCTACAAAGCCTTCCACTTGCAAGTGAAGTTGGACTGTCATTTACGGACACAGCATGACATTACAGTGTCCAGAGAAGCTGTGGAAGGGAAGCACGATTTCGTTTGCGATTACTGCTTCAAAGTGTTCGAGAATGCTTATGCTCTGAGCATGCACAAGATCTACCATCGCACCATCGGATACTACGGGTGCATCTACTGCAAGAGAAAGTTCAATACGATAACCCTTTACAATAAGCATAAGAATCATCATTTTGCTCAACTCAACGTCGACAATCCGACGAAGTGCGAACACTGTGACGAGACATTCGTTGCCTTTAGGGAAATGATATACCACATGAGGGACGAACACGGGGACGATAAAGAATGGATTGTGTTGCCGAAAGACGACAAAGAAGAAAAATGTAACATCTGCAGCAAGACTTTCTTCAACCTCCACAGGCATCTCTCGTATCACGAGGAAAACAGATGCAAAAAGTGCGGTGAATACTTTTTCTCCAGGATTGACTATGACCAACACCTCTGCTCCATAGAGAGTGATGAGGAAGTTGATGAAAGTAACGAAAATGACTTACGGGCCCAACAAAAGTATGAAGAATGCACTTTCTGCTTCAAGCCTATTACCAGGAAAACCACAAAGAAAATACATGATAATTTGCACAGAGTGTCAGGAGCGATTTCGTGCCGATTCTGCCCGCTCAAGTTTAAAACGATGGACGCGTTCAATATTCACGCTTTCTCGCATCGAAGCAGGAAGTACAACATCAAGCCCATAAAGTGCAGAATCTGTCGCGAAAAGTTCATCAAATACGGACCTTTCATGAAGCATATGAAAGGCTTACACAAATCGACGAAGAAGGTCCACTACCGAGCCATGATCAAAGCTGAGCGTTGCGTGGTTTGCGGAGATGACTTCCCGAACTTGCATAACCACTACCGCTACCATTTGCAGAACCAATGTCAACTCTGTCGCAAATACTTCACCTCCGTCAAAGTGTTTTCTAAACACCAGTGTGATAATCCAGACTCCGATCCTGCCAAAGTTTTCACTAGCGATGAAAATCTAGCCGCGCTCATTAAATCCTATGTTCCTAAAGATGAAAAGGACGATGAAAAGTTCTACGGCTACACTGACGATGAAGAAGAGGAGGAGGAACCCGTAGAACCTGAAATGCATAATGTTCCTGAGAACGATGAAAGTCAGAATTCTATGGATAACGAGAACTTGATAGTTCAACCGTTTATTATATCGGATGTGTTGTCCCTTTATGAGAAAAGGGAAGAGTTACTGGTGTTTTATCAGCAAGGAAGATCTAATGGGACGGAAGACGCTCAGGCGCCTGGAAAGAGGGACGGCAATGATAAACTAAGTGGCGGAAACAGTGACGTAGACGTCGTGAACTTGTCCGATGATGACGAAATAGGTGTAACGAATATAGAGTACCCTATTATAGAGATTGACGACTAA
Protein Sequence: MALKLGKCRLCLKLGDFYSIYTMDNAILLSEMVMECARVKIYEGDGLPEKICSECIQKLSSAYIFKQQCERSDQELRRNYVQPPGFSISPPPQNRQSSDSAFSSAHTDISLQTKPSSAEKSTPAKRNRKRSHESIDNASVSSQSHEYRPSSSKRVEELRHSRKKARNRSPNASLMDSDYEDNSISHFSAETDSDEPLLHTYKCKLCPKEFRTHASLRQHNRIHSREKLGENALVDIPAGSQKNNDATDEDDKLKCKKCSKTFKLKIMLKRHHETCGKTQKLSPQKELLITLEPIDAVLNKETEKKESRKIECEMCTVRFKTIENLEKHMRVVHAAVLKKNLRALENKEPGKLAIPCLFCHTMFDDFYVHCAHFSSCSKRNDSKVLQCPICNRVMSNKSSYFTHLKNIHFWPREGSKPIERKKGFECRMCGKKLASQDLLITHLAAHMTNSEDADEADNDSRVTPVEDNTSINSEYSSPASGSGPHKCEICGKGFKYKKALQTHVSKHSQAEIKSEPPDKPSTSLLDETYPESESDSSPGEGEDNTCDICEKQFSYKRVLIQHKKTKHNMSSGTKRAKINLKDCSVRCLICDTEMKVSAINEHNQKHISANMKPRNQYTCAECGEQFKACSALANHIKLIHRLKQTPMPTPQQFEGADLADFCEVVVTKAEPLDELQSHNGFGEVPVTNAGAVVDLAGFTCHLCGKKMKTLISLKRHVNWHENVGNNLEKNIECFVCKETFRFQVHYRLHMREHYTDTNLDPKHLTCPICGRRSKNLRAAKAHMNFHKQTRFKNKDYQCSICKRIFQHRKVYLSHMAIHYKRGEGQNMIVGDIVPNNIDKTAFDGTHTCPQCGKVCDSENSLKCHIRWHTSKSSLYGSRHECMVCHLQFTNKRRLEIHTRSHFEDENGPFKCSICGKGYIDEEYFRKHVKGHNFDHQSHKKRLEKLRKDKVKCPICPRFYPDMVKLIRHLRRTHPESKMIKQDPDAPPQQYYSCKLCTKVFLDERRLQHHEEAHLRKPEFFKCKFCGKNTVSLKNHRLHVKQFHLTRNYRDNPLKCPHCDDKFIKGYSLHHHLRDAHGIEEEWIAERTDKTLEGPLKEFQCSICLKLLASKGNFERHVDYHNSLRCNYCFDYFSSLKFLEGHLAFSCDKKKLIGDTETYPKKVKCHICYKAFHLQVKLDCHLRTQHDITVSREAVEGKHDFVCDYCFKVFENAYALSMHKIYHRTIGYYGCIYCKRKFNTITLYNKHKNHHFAQLNVDNPTKCEHCDETFVAFREMIYHMRDEHGDDKEWIVLPKDDKEEKCNICSKTFFNLHRHLSYHEENRCKKCGEYFFSRIDYDQHLCSIESDEEVDESNENDLRAQQKYEECTFCFKPITRKTTKKIHDNLHRVSGAISCRFCPLKFKTMDAFNIHAFSHRSRKYNIKPIKCRICREKFIKYGPFMKHMKGLHKSTKKVHYRAMIKAERCVVCGDDFPNLHNHYRYHLQNQCQLCRKYFTSVKVFSKHQCDNPDSDPAKVFTSDENLAALIKSYVPKDEKDDEKFYGYTDDEEEEEEPVEPEMHNVPENDESQNSMDNENLIVQPFIISDVLSLYEKREELLVFYQQGRSNGTEDAQAPGKRDGNDKLSGGNSDVDVVNLSDDDEIGVTNIEYPIIEIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00674509;
90% Identity: -
80% Identity: -