Hpse000039.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376336.1:411523-414228[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.6e-07 2.3e-05 25.0 0.6 1 21 106 126 106 127 0.94 2 17 0.00018 0.012 16.5 0.1 3 23 133 153 132 153 0.96 3 17 0.15 9.6 7.3 1.1 3 23 160 181 159 181 0.90 4 17 0.0006 0.038 14.8 1.6 1 23 186 208 186 208 0.95 5 17 4.7e-05 0.003 18.3 0.8 1 23 249 272 249 272 0.95 6 17 0.0001 0.0067 17.2 2.7 1 23 278 300 278 300 0.98 7 17 0.96 62 4.7 0.9 5 23 310 328 308 328 0.95 8 17 0.076 4.9 8.2 1.5 1 23 334 357 334 357 0.94 9 17 0.00024 0.016 16.1 0.8 2 21 491 510 490 511 0.94 10 17 0.00025 0.016 16.0 0.9 1 23 544 567 544 567 0.95 11 17 4.3e-05 0.0028 18.4 0.1 2 23 573 594 572 594 0.96 12 17 0.12 7.5 7.6 2.3 2 20 598 616 598 618 0.92 13 17 0.0035 0.23 12.4 0.6 1 23 644 667 644 667 0.94 14 17 0.00017 0.011 16.5 1.0 1 23 673 695 673 695 0.95 15 17 0.035 2.3 9.2 0.2 1 23 701 723 701 723 0.98 16 17 0.0049 0.31 11.9 0.6 1 23 729 752 729 752 0.94 17 17 0.0051 0.33 11.9 2.6 1 23 758 781 758 781 0.95
Sequence Information
- Coding Sequence
- ATGGAAGAGGACTTCGGCCTGCCCCCTGGACTTTGCTGCGACTGCTTCGACGCCGCCATCGCCGCCGCACGCTTCAAACTACTGTGCACCGAGTCCCTCAAACAGTGGTCGCGAGCCGTCACCTTTCTGTCCAATATCGACGGGCCCTATGAAGGCGACAAGACTTACTACATATTTTACAGCGCAGAACAAGAAACGATCTTCAGAGATGGTAGAGAGAAAGTCTCAAACAAAGAAGATGTATTAGAACGGTTAATATCGACGGTGGTCGATAAAGTTACCCCCCCGAAAATACGTTCAAACAAGATTCTGAGGTGCAAATGCCCCGACTGTGGCAAAAAGTTCTCTACCCCGGACAATTTAAACGAACATTTGAAAGGCTCTATGAAGAGAGCGTGCGAGGAATGCGGGAAAGTCTTCTCTCGAGAATCGCTGGCGAAGCATTTGACCACGGCTCACGGGAAAACAATTTTACTGTGCGACATTTGTCATATGCACTTCGAGGATTTAGACACAGTCGAGCGTCATTTCGAGGAATTGCACGATGCTAAAACCCACGTTTGCCACGTGTGCGGCAGCGGGTACTCGAATTCTAGAGCGTTGCGAACGCACATGTACGCCCATACGTTATTCCACTGCGCGACCTGCAACATGAGCTTCGAAAATCGGAAGTGTCACAACCACCACCAGAATCATTGCTCGGCGAAGGTCGGCAAAACTAAACCTGTAGTAAAATTCACGAGTTTCACGTGCGATCATTGTGGCATCTCCTACGATAGGAAGCCGTCTTTAAGAATCCATATCATACAAAAACATTTAAACGTGCTACCTTACGTCTGCCACACTTGCGGGAAACGCGCATCGACGCTTGCGCATTTGCGCTCTCACCAAACCGTTCATACGTCGCAACGGATAGTGTTTCGTTGCAATTGCGGATCACAATTCCGTACTGAATTAGGTTTTCAGTTGCATCAAAGAATCCATACGGGGGAGAAGCCTTACAAATGTGCCGAGTGCGGAGAATGCTTCCTATCGGCATCTAGGCGTCTCGATCACATTAAAAGGAGGCATAGGAGTGCCCAGGATATGCTTCACGGGTGTGAGAAGTGTTCGGCCAGGTTCCTGTTAGAAGAATCCCTCTGCCCGCCCGGCGTATGCGTCTCTTGCACAACCGCCGTCCTCGCCGCGCAAGAGTTCCGACTCTTCGTCCGGGATTCCCAAAAGACATGGATCAAAGCCGTCGAAACCTTGCAAAGCTTGCCGACAACGTCCACAACGTCTCCCATCAAATCTCTTTGCGCTTTCATGTCCCCCGACAATCTGGACTTGCAGACTTTCAAAAATTACTCTGGAGGTGATCCGAAAACGATCGTAAACCGGTTAACAGATCGTAAAAAGCGGGTGTCACTACCACATCACGTTGTCAGTAAAGATAGGAAGCCAAGAGCGGCCCGAACCGGTCCCTCTTGCGTCTGCCCCGACTGCGACCAACAATTTATCAGCCCTCACTACCTGAACATGCATTTACGGAACAGCGGACAGAAGGAAGCGTGCCTTATATGTGGAACCATCGTTATTCGAGGTCTAGAAATGAAGGAGCACTTGTATTACGTTCACGGAGACGTGACCTTTCTGTGTCCTCACTGTCCACAACTCTTCAATCGGGAGTTGGAATTGAAGAAACATGTCAGAACGGCTCACAGATCCGGAGCGTTGACCTGCGGGGACTGCGGGCGGACTTTTCCCCGTAGTGGAGCTTTCGAAGCACATTCTCAAATGCACGCAGTCAGGACTTGCAGAGCTTGTGGCGTGCAGTTCACCAATAGAAGCTGCTATAGACGCCACAGGTCACAATGCGAGCCTGACGCTAAACCAGATAAGCAGAACATGCCTAGAAGCCGTCGCTCCAACATTCGCGACCCGGCTACCTACATCTGCGATTACTGCCTGAAGGAGTACCACTCCAGACCTCAACTGAAGAACCATATCATCTGGATACATATGAACGTCCGTCCTCATCAGTGCCAATGGTGCGGGAAGAGGTTTTACACGCCGTCGAGGTTAGCCGAGCATAAAGTCGTGCACACGAGGGAGAGGAATTTCGAATGCGACATTTGCGGTATGAAATTGGTTTCCAAGATGGCCGCTGTGTATCATAGAAGGCGCCACACAGGGGAAAAGCCGTACCAATGTGAGGATTGCGATGAGAAGTTCATTTCTGCGTCGCGAAGGTCTGAGCATGCGAAACGGAGGCACGGAAAGGGTTCAAGGTTCCAATGTCTGCAGTGTTCATCTAAGTTCGTTCGATCCCATGAGCTCAGGAAACATGAGGAGAAGGCTCATGGAGTTATTAGTAAAGAGATAAATAAGAGTTTTCAAATTGATACAATGGCACCGACTCTGGATTATCACTCGCTGAAAGGTTTGGCGTCCAGCTCGGAATCGACGCCAATGAATAAGTTTTGGATTTTAAACAATTAA
- Protein Sequence
- MEEDFGLPPGLCCDCFDAAIAAARFKLLCTESLKQWSRAVTFLSNIDGPYEGDKTYYIFYSAEQETIFRDGREKVSNKEDVLERLISTVVDKVTPPKIRSNKILRCKCPDCGKKFSTPDNLNEHLKGSMKRACEECGKVFSRESLAKHLTTAHGKTILLCDICHMHFEDLDTVERHFEELHDAKTHVCHVCGSGYSNSRALRTHMYAHTLFHCATCNMSFENRKCHNHHQNHCSAKVGKTKPVVKFTSFTCDHCGISYDRKPSLRIHIIQKHLNVLPYVCHTCGKRASTLAHLRSHQTVHTSQRIVFRCNCGSQFRTELGFQLHQRIHTGEKPYKCAECGECFLSASRRLDHIKRRHRSAQDMLHGCEKCSARFLLEESLCPPGVCVSCTTAVLAAQEFRLFVRDSQKTWIKAVETLQSLPTTSTTSPIKSLCAFMSPDNLDLQTFKNYSGGDPKTIVNRLTDRKKRVSLPHHVVSKDRKPRAARTGPSCVCPDCDQQFISPHYLNMHLRNSGQKEACLICGTIVIRGLEMKEHLYYVHGDVTFLCPHCPQLFNRELELKKHVRTAHRSGALTCGDCGRTFPRSGAFEAHSQMHAVRTCRACGVQFTNRSCYRRHRSQCEPDAKPDKQNMPRSRRSNIRDPATYICDYCLKEYHSRPQLKNHIIWIHMNVRPHQCQWCGKRFYTPSRLAEHKVVHTRERNFECDICGMKLVSKMAAVYHRRRHTGEKPYQCEDCDEKFISASRRSEHAKRRHGKGSRFQCLQCSSKFVRSHELRKHEEKAHGVISKEINKSFQIDTMAPTLDYHSLKGLASSSESTPMNKFWILNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -