Hpse007402.1
Basic Information
- Gene Symbol
- znf711
- Assembly
- GCA_947369225.1
- Location
- OX376327.1:4878957-4894573[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 1.4 88 4.3 1.2 1 23 264 287 264 287 0.96 2 22 0.00015 0.0096 16.7 0.5 2 23 294 315 293 315 0.95 3 22 0.23 15 6.7 3.4 1 23 319 342 319 342 0.97 4 22 0.4 26 5.9 0.4 2 23 349 371 348 371 0.90 5 22 0.0071 0.46 11.4 1.2 1 23 374 397 374 397 0.96 6 22 0.032 2 9.4 7.5 1 23 400 423 400 423 0.90 7 22 0.028 1.8 9.5 1.8 2 21 432 451 431 456 0.93 8 22 0.00034 0.022 15.6 0.0 1 23 463 486 463 486 0.95 9 22 0.0064 0.41 11.6 6.1 2 23 493 515 492 515 0.91 10 22 7.3e-05 0.0047 17.7 1.5 3 23 526 546 525 546 0.98 11 22 4e-05 0.0026 18.5 0.8 1 23 552 575 552 575 0.98 12 22 0.31 20 6.3 1.1 1 23 767 790 767 790 0.91 13 22 4.5e-05 0.0029 18.4 0.4 3 23 798 818 796 818 0.95 14 22 0.15 9.6 7.3 3.5 1 23 822 845 822 845 0.97 15 22 0.29 18 6.4 1.2 2 23 852 874 851 874 0.93 16 22 0.0034 0.22 12.5 1.3 1 23 882 905 882 905 0.96 17 22 0.00044 0.028 15.2 1.5 1 23 908 931 908 931 0.92 18 22 0.0097 0.62 11.0 0.5 2 21 940 959 939 964 0.92 19 22 0.00012 0.0074 17.1 0.1 1 23 971 994 971 994 0.95 20 22 0.0082 0.53 11.2 5.2 2 23 1001 1023 1000 1023 0.91 21 22 0.019 1.2 10.1 1.7 3 23 1034 1054 1033 1054 0.97 22 22 4e-05 0.0026 18.5 0.8 1 23 1060 1083 1060 1083 0.98
Sequence Information
- Coding Sequence
- ATGATTCTCGAGAGATCTTGTGTTAATAATAAGTTTGAGCAACCATGTCTGTCTACATTTATATCAATAGTAAAAACCGATTACGATTTTGAAATTATTTATCCTGATGATGTTGACGAAGAACAGTATGTGAAGCTGGAAGATGTTGACGATATTGAACTGAAGGATAAAGAACAGTATATGAGGCTCGAAGATGTTTATGATACTGAAGTGAACATTTCATTTGAAGATGGATTAGATGAATGTGATGTCAAGGACGAAGAAGTTTCTGTTGGTGAAAATGATGAGAAAGATGTAAAATTGGAAAATAATGATCTCACAGTGTTACCAGAAAATAATGATCTCACAGTGTTACCAGAAAATAATGATCTCACAGTGTTACCAGAAAATAATGATCTCACAGTGTTACCAGAAAATAATGATCTCACAGTGTTACCAGAAAATAATGATCTCACAGTGTTACCAGAAAATTTAGAAAGTAACATTAATACTGCAGATGCTATGCAGATCGTTACCGATGATGATATGAAAAAACCACTAGAATTTAAGCATAGTATAAAGTCAGAGAAAAAAGATAATCTTGAAAATAATACCAGAAATGAAGAAGATATCTCTACAAAATTATCTGAAGGCAAAAAAAAACTAACATTTCCATATCGAACTCTAATTTTGGATTCTGAAGAAACTTTTAGAGAAAATGAACATTATAAACAAGTACAAATAGATGAAAAGGAACTCTTATCTTTGTTGGAAAAGGAGCGCCATTCAGAGGTTTACAAAAGAAGTCCTTTTAAATGTTATGGATGCATAATGGGCTTTCCAAACAACAACTTGTATACTGAACATAAAAAGAATTTTCACCTGAAAAAGAAGAAATGGACGTGTGATATCTGCGGAAGAAAGTTTTTTCAGAAATTTTATTTACTGCAACATATTGAAGAACATTATAGTAGATATGACTGCTTACTTTGTGACCACAGTTATATAAAAAGAAGGCGGCTGTATGACCATCTTCGTCGCAAACACTCTAACACAAGAGTGGTGGAATGTCGATATTGTGAACTTAGATTCAGAGAAATTCCTGAATTCCGGCGCCACTTCTTAGAAACCCACAAGAAGTTCATTTGTGATCACTGCGGGCTTACCTTTTTAAAAAAGCCTGCTATCAAGAAACATATGAGAGAAAATCATATAACATACGCATGCAAAGACTGTAACAAAGTTTACAAATTCCGTCATTGTCTAATGAAACATCGATATTTCAACCATGTAGTAAATCCATCAGAAAAAAGCTACTGCGTGGAATGTAATAAGCAGTTTAGTAATGAGGTGAAATACAAGTCCCATTTGAAACATTCCTTGCTGCATACACCTCGCCCGAACAGGTACCCTTGTCCAGATTGCGAGAAAATATACGCAAGGAAAGATGGAATGCGAATTCACTATCAGGCCGTGCATTCTAAGCAATGGAAGCATGTTTGCATTACATGTTCCAAGCATTTTCCCACAAAAACTCACCTTACACGGCACATCAAATCGATACACGAGAAAAGGGAACAACCAAAGAACAAGATTTGCACTTACTGCGGGCGAGGATTCTCGAGCAACCACATCTTGAACAACCACATTCGTACTCACACTGGGGAACGCCCCTACAAATGCGAACATTGTTCAGCCGCATTTACGCAGAAATATCCGCTGGTCGTCCACATGAAATCAGTGCATAAACTACACCAACAATGTCTGTCTACATTTACATCAATAGTAAAAACTGATTATGATTTTGAAATTATTTATCCTGATGATGTTGACGAAGAACAGTATGTGAAGCTGGAAGATGTTGATGATATTGAACTGGACATATTATTTGAAGATGAATGTGACGTGAAGGACGGAGAAGTTTCTGTTGGTGAAAATGACGAGAATGATGTAAAATTGGAAAATGACAATCTCACAGTGTTACCAGAAAATTTAGAAAGTAATATTAATACTGCAAATGCTATGCAGATCGTTACTGATGATGATATGAAAAAACCACTAGAATTCAAGCACAGTAGTATAAAGTCGGAGAAAACAGATAATCTTAAAAGTAATACCAGAAATGAAGAAGAGATCTCTACTAAATCAACTGAAGGCAAAAGAAAACTAACATTTCCATATCGAACTCTATATTTGAACTCTGACCATGAAGAACATTATAGAGAGAATGAACATTATAAACAAGTAAAAATCGATCAAAAGGAACTCATGTCTTTGTTAGAAATGGAGCGCAATTCATTGGTATTCAAAAGAAGTCCTTTCAAATGCAATGGTTGTGTCATGAGCTTTCCAAACAACAACATATATATTCAGCATAAAAAGAATTTTCATCCGAAAAAGAATAAATGGGCGTGTGATATCTGCGGAAGATTTTTTTTTCAGAAATCTTATTTACTGAAACATGTTAAAGGACATTATAATAGATATGACTGCTTGCTATGTGATCACAGTTATATTAAAAAAAGGCGGCTGTATGACCATCTTCGTCGTAAACACTACAACAAAAGAGTGGTCGAATGTCGACATTGTGGAGTTAGATACAGAGAAATTCCTGAATTTCGGCGCCACTTCAAAGAAACCCACAAGATAGAACCCCACAAGAAGTTCATTTGTGATCAGTGCGGGCAGAGCTTTTTAAAAAAGTATGGTATCAGGAAACATATGAGACAAAATCACATAACATTCGAATGCAAAGAATGTAATAAAGTTTACAAATTTCGTTGGCTTCTGATAAAACATCGATATTGGCGCCATGTTGTAAATCCATCAGAGAAAAGCTACTGCGTGGAATGTGATAAGCAGTTTAGTAATGAGGTGAAATACAAGTCACATTTGCAAAATTCCATGTGGCATACTCTTCGCCCGAACAGTTACCCTTGTCCAGATTGCGACAAAATATACTCAAGGATAGATGCAATGCGAAATCACTATAAGGCTGTGCATTCTAAACAATGGAAGCATGTTTGCATTACATGTTCCAAGCATTTTGTCACAAAAGGTCACCTTACACAGCACATCAAATCAATTCACGACAAAAGGGAGAAACCAAAGAACAAGATTTGCACTTACTGCGGGCGAGGATTCTCGTGCAACAAAATCTTGGAGAACCACATTCGTACTCACACTGGGGAACGCCCCTACAAATGCGAACATTGTTCTGCCGCATTTACGCAGAAATATCCGCTGGTCGTCCACATGAAATCAGTGCATAAACTTCACATCACGGTGGCAACAATAAAATAG
- Protein Sequence
- MILERSCVNNKFEQPCLSTFISIVKTDYDFEIIYPDDVDEEQYVKLEDVDDIELKDKEQYMRLEDVYDTEVNISFEDGLDECDVKDEEVSVGENDEKDVKLENNDLTVLPENNDLTVLPENNDLTVLPENNDLTVLPENNDLTVLPENNDLTVLPENLESNINTADAMQIVTDDDMKKPLEFKHSIKSEKKDNLENNTRNEEDISTKLSEGKKKLTFPYRTLILDSEETFRENEHYKQVQIDEKELLSLLEKERHSEVYKRSPFKCYGCIMGFPNNNLYTEHKKNFHLKKKKWTCDICGRKFFQKFYLLQHIEEHYSRYDCLLCDHSYIKRRRLYDHLRRKHSNTRVVECRYCELRFREIPEFRRHFLETHKKFICDHCGLTFLKKPAIKKHMRENHITYACKDCNKVYKFRHCLMKHRYFNHVVNPSEKSYCVECNKQFSNEVKYKSHLKHSLLHTPRPNRYPCPDCEKIYARKDGMRIHYQAVHSKQWKHVCITCSKHFPTKTHLTRHIKSIHEKREQPKNKICTYCGRGFSSNHILNNHIRTHTGERPYKCEHCSAAFTQKYPLVVHMKSVHKLHQQCLSTFTSIVKTDYDFEIIYPDDVDEEQYVKLEDVDDIELDILFEDECDVKDGEVSVGENDENDVKLENDNLTVLPENLESNINTANAMQIVTDDDMKKPLEFKHSSIKSEKTDNLKSNTRNEEEISTKSTEGKRKLTFPYRTLYLNSDHEEHYRENEHYKQVKIDQKELMSLLEMERNSLVFKRSPFKCNGCVMSFPNNNIYIQHKKNFHPKKNKWACDICGRFFFQKSYLLKHVKGHYNRYDCLLCDHSYIKKRRLYDHLRRKHYNKRVVECRHCGVRYREIPEFRRHFKETHKIEPHKKFICDQCGQSFLKKYGIRKHMRQNHITFECKECNKVYKFRWLLIKHRYWRHVVNPSEKSYCVECDKQFSNEVKYKSHLQNSMWHTLRPNSYPCPDCDKIYSRIDAMRNHYKAVHSKQWKHVCITCSKHFVTKGHLTQHIKSIHDKREKPKNKICTYCGRGFSCNKILENHIRTHTGERPYKCEHCSAAFTQKYPLVVHMKSVHKLHITVATIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -