Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376336.1:5557523-5568991[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.0051 0.33 11.9 0.1 2 23 26 48 26 48 0.91

2 29 0.96 62 4.7 0.2 2 23 73 95 72 95 0.94

3 29 0.0056 0.36 11.8 1.4 3 23 119 139 118 139 0.98

4 29 5.8e-05 0.0037 18.0 3.9 1 23 143 166 143 166 0.95

5 29 0.032 2 9.4 0.1 3 21 173 191 172 192 0.94

6 29 0.0077 0.49 11.3 0.2 1 23 199 222 199 222 0.92

7 29 0.00052 0.034 15.0 0.1 1 23 229 252 229 252 0.96

8 29 0.01 0.67 10.9 0.2 2 23 351 373 350 373 0.93

9 29 0.034 2.2 9.3 0.8 2 23 397 418 396 418 0.96

10 29 0.0016 0.1 13.5 2.7 1 21 422 442 422 445 0.95

11 29 1.7 1.1e+02 3.9 1.3 1 21 451 471 451 472 0.90

12 29 0.0011 0.068 14.0 1.5 1 23 509 532 509 532 0.96

13 29 0.76 49 5.1 1.6 1 13 537 549 537 551 0.91

14 29 0.01 0.67 10.9 0.2 2 23 633 655 632 655 0.93

15 29 0.086 5.5 8.0 0.6 3 23 680 700 678 700 0.95

16 29 0.0016 0.1 13.5 2.7 1 21 704 724 704 727 0.95

17 29 0.09 5.8 8.0 0.8 1 21 733 753 733 754 0.94

18 29 0.0015 0.096 13.6 1.6 1 23 791 814 791 814 0.96

19 29 0.38 25 6.0 3.5 1 23 819 841 819 841 0.95

20 29 1.4e-05 0.0009 19.9 0.7 1 20 847 866 847 869 0.94

21 29 0.25 16 6.6 0.4 3 23 920 941 919 941 0.96

22 29 0.26 17 6.5 0.2 3 23 1013 1033 1012 1033 0.96

23 29 0.00031 0.02 15.7 1.1 1 21 1037 1057 1037 1058 0.96

24 29 0.5 32 5.6 1.2 1 23 1099 1122 1099 1122 0.96

25 29 0.003 0.19 12.6 0.3 2 23 1193 1214 1192 1214 0.94

26 29 0.00044 0.028 15.3 0.0 1 23 1218 1241 1218 1241 0.97

27 29 0.089 5.7 8.0 2.1 1 23 1245 1268 1245 1268 0.97

28 29 0.00012 0.0076 17.0 1.9 1 23 1307 1330 1307 1330 0.97

29 29 0.0001 0.0066 17.2 0.4 1 23 1340 1363 1340 1363 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.0051	0.33	11.9	0.1	2	23	26	48	26	48	0.91
2	29	0.96	62	4.7	0.2	2	23	73	95	72	95	0.94
3	29	0.0056	0.36	11.8	1.4	3	23	119	139	118	139	0.98
4	29	5.8e-05	0.0037	18.0	3.9	1	23	143	166	143	166	0.95
5	29	0.032	2	9.4	0.1	3	21	173	191	172	192	0.94
6	29	0.0077	0.49	11.3	0.2	1	23	199	222	199	222	0.92
7	29	0.00052	0.034	15.0	0.1	1	23	229	252	229	252	0.96
8	29	0.01	0.67	10.9	0.2	2	23	351	373	350	373	0.93
9	29	0.034	2.2	9.3	0.8	2	23	397	418	396	418	0.96
10	29	0.0016	0.1	13.5	2.7	1	21	422	442	422	445	0.95
11	29	1.7	1.1e+02	3.9	1.3	1	21	451	471	451	472	0.90
12	29	0.0011	0.068	14.0	1.5	1	23	509	532	509	532	0.96
13	29	0.76	49	5.1	1.6	1	13	537	549	537	551	0.91
14	29	0.01	0.67	10.9	0.2	2	23	633	655	632	655	0.93
15	29	0.086	5.5	8.0	0.6	3	23	680	700	678	700	0.95
16	29	0.0016	0.1	13.5	2.7	1	21	704	724	704	727	0.95
17	29	0.09	5.8	8.0	0.8	1	21	733	753	733	754	0.94
18	29	0.0015	0.096	13.6	1.6	1	23	791	814	791	814	0.96
19	29	0.38	25	6.0	3.5	1	23	819	841	819	841	0.95
20	29	1.4e-05	0.0009	19.9	0.7	1	20	847	866	847	869	0.94
21	29	0.25	16	6.6	0.4	3	23	920	941	919	941	0.96
22	29	0.26	17	6.5	0.2	3	23	1013	1033	1012	1033	0.96
23	29	0.00031	0.02	15.7	1.1	1	21	1037	1057	1037	1058	0.96
24	29	0.5	32	5.6	1.2	1	23	1099	1122	1099	1122	0.96
25	29	0.003	0.19	12.6	0.3	2	23	1193	1214	1192	1214	0.94
26	29	0.00044	0.028	15.3	0.0	1	23	1218	1241	1218	1241	0.97
27	29	0.089	5.7	8.0	2.1	1	23	1245	1268	1245	1268	0.97
28	29	0.00012	0.0076	17.0	1.9	1	23	1307	1330	1307	1330	0.97
29	29	0.0001	0.0066	17.2	0.4	1	23	1340	1363	1340	1363	0.96

Sequence Information

Coding Sequence: ATGGCCCGAAACAACGCCCGTATCATTATCCAATATGCGACGGCGTACCCGTTCAGGCTTCCAGAGGGTTCCGCGGTTTGCGTGTACTGCTACGAGAGCTATGACGACCCCTCGCTATTTAGAAAGCACATGGACGATGAGCATAAAACGTTTAAACTGAGTTCAGCTTTCGCTCATCTCCACGAGGGGTATATAAAGACAGACTGCACGGTTCTCCGCTGCCGTATGTGCTCTGAGAACTACAAGAACGTGGAAGAGGTCGCTTTGCATTTGAAAAACGTTCACAATAGAAATATAAACATGAACTTCGACTTGGGCGTCCAACCGTTTGTGGTCGAGAAAGATAGATGGCTTTGTGCCATGTGTAACGCGAAATTTAGTAATCTCCGTTCACTCAGCCGGCACACTCAGAAGCATTTTGTCAAATATACCTGCGACACGTGCGGGAAGTCGTACTCGACGCACACGTCTTTGAATCACCATATAGCATATTCTCATGTGACGAATGAGAGGATTTGCAGAAAGTGCAAAAAGGGGTTCGGTTCGTTGGCTGAATTGAGAGAGCACCTCATGATATCGAACAGATGCTGTCAGCATGTGTGCAACATCTGCGGAGCACGGTTCGCCTCGTGGGTCTTGAAGCAGAACCACTTGACCGAAGCTCACGCAACACCTAAAAAGCAGTACCCTTGCTCTGAATGCGGACAGGTCTTTGAGAAGTCTGACGCATGGCGGGTTCACTTCAAAATTGCTCACACAGATGATCACTTCCAGTGTTCGTGTTGCGGTCGTAAGTTTGACAACACGGATGGCGTCAGTATGCGACAGATGGCAAAACGGAACGCCGAGACAATGTTGCAAAACTCTACTCTTTATCCCTTCAGACTGCAGGGCAAATTGATACTGTGTGTCTTCTGCCGGGAGAAATATGAAGACCCTGAAAACTTCAGGTGTCATGTAGACGAGAACCATAAAATCTTCAATTTACGTGTCGCTTTTGCTCACCTCGGCAAAGGCAAAGACTATCTAAAAGTCGACTGCTCGAATATGAAGTGCAAAGTTTGCACCAAATCTTTTAACACATTAAACGAGATTGCCGAACACGTGTCCATTGATCACAATTGCAGAAAGCTGAACTTGAGCTACGACATTGGACTACAGCCTTATAAATTGCATAGAGATAGATGGCAGTGCTACCTCTGCGATCAGAAGCTGCCGACTCTGTCGAAACTCAGCAGGCATACGACGTCGCATTATCAGAAATACACTTGCGATACTTGCGGTAGGACATACATGACCAATGATGCATTGAAGTATCACATCAAATGCAGACACACCGGCGCTGGTGAATATATGTGCAGAAAGTGCTGGCAAGATTTCTCAACGTTAGAAAAGAAGACAGAGCATTTTAAGACTTCTAAGTCTTGCTGGCCATACTGCTGCTTTAAATGCGGTGACCGCTTCTTATCTTGGGAGCAAAAACAGAAGCATTTAGTGGAACACCATGAGCAGCCACAAATGACCTATGATTGTCCGGAATGTGGAGTGAAGTTTGATTCAAGAAAAAGGTTTTTCAGACATTATAAAATAACTCACACTGATGAGAATTTCGTATGTTCCTTCTGCGGCCAACAGTTCCGTACCAAAAACACGGACGGCGTCAGTCGCATACAGATGGCAAAACGGAACGCGGAGACAATGTTGCGATGCTCAACTCTTTATCCCTTCAGACTGCAGGGCAAATTGATACTGTGTGTCTTCTGCCGGGAGAAATATGAAGATCCTGAAAACTTCAGGTGTCATGTAGACGAGAATCACAAAATCTTCAATTTACGAACTGCTTTTGCTCACCTCGGCAAAGGCAAAGACTATCTAAAAGTCGACTGCTCGAATATGAAGTGCAAAGTTTGCACCAAATCTTTTAACACATTAAACGAAATTGCCGAACACGTGTCCATTGATCACGATTGCAAGAAGCTAAACTTGAGCTACGACATTGGACTGCAGCCTTACAAATTGCATAGAGATAGATGGGACTGCTACCTCTGCGATCAGAAGCTGCCGACCCTGTCGAAACTCAGCAGGCACACGACGTCGCATTATCAGAAATACACTTGCGATACTTGCGGTAGGACATACATGACCAATGATGCATTGAAGTATCACATCAAATGCAGACACACCGGCGCTGGTGAATATACGTGCAGAAAGTGCTGGCGAAATTTCTCAACGTTAGAAAAGAAGACGGAGCATCTTAAGGCTTCTAAGTCTTGCAGGCCTTTTTGCTGCCTTAAATGCGGTGACCGCTTCTTATCTTGGGAGCAAAAACAGAAGCATTTAGTGGAACACCATGAGCAACCGCAAATGACCTATGATTGTCCGGAATGTGGAGTGAAGTTTGATTCAAGAAAAAGGTTTTTCAAACATTATAAAATAACTCACACTGATGAGAATTTCGTTTGTTCCTGTTGCGGTCAAAAGTTTCATACCAAAAGTGGGTTGGACGACcacaggttgggacatacaggggagaagctttttgtgtgcaatgtatgtacaaaggcgttttcgaggaataagagtctgaagcagcacatgtggattcacaGGTCCACATTGGAAATTCATGGACGTAGTGAAAGTGAACCAAAAAGGAAAATGGTCCTTGTCTACCAAACTCCACAGCGGCGAAACGCTGAGCTCATTTTAAACTATTCCACTGCTTACCCCTTCAAAACTAGATTTAGCCAAATACTCTGCGCCTACTGTCATGATGAATTCGACATTCTACCCAACTTGAGGGAACACATGAAAACTGAACATTTAAATTCGGATTTTAAAAACGTGTTTTACAGGACTAAAGATAGCTTGGTTAAAGTAGACATAACGCAATTGAAATGTAAAGTATGCTCGCAAGAAATCATCGATATAGACGTGTTGATGACACATTTAGCGCACGAACACGATTTACCAGTAAAATTCAATACACGTTTTGGAGTATTGCCGTATAAGCAAAACTCTGACGATAACTGGCTGTGCGTTTATTGTCAGAAAGTTATAGTAGACTTCGTTCAGTTCAAGCGTCATGTAGCAAATCATTTCATGAATTTCAGTTGCGACAAATGCGGTACTACTTTTGTTTCCGATCATTCCTTGCGCGATCACCAGCGTCAGGTCAAATGCTTCCGAACGTCCTACAAAGCTCGCAATGGGCGGGTGCTCAAACCTCGCACCAATGCTGAAATTATATTGCAATGCTCTACGGCAACTCCTTTTAGAACATGGAAAAGCAATTTCAACTGTGTGTTCTGTCGAGTGCAGTCTAGCGATCCCTGTGGCCTCAGAAGTCACATGGCAACACGCCATGTTAATTATGATGTCCAAGCGGCTTTCTACAAAAAACTGGGCAAGGAATTTCTAAAAATAGACATTACTGATCTCCAATGCAAATTATGCTTTATGCCTATTGAAACTTTCGAAGTACTGACGTTTCATTTGAAGAATGATCACCAGCAACCTCTCACTGATGATCAGTTAGGCGTTTTACCTTTTCGACTTAACGACGGAACTATATGGAAATGTACAATGTGTCCAAATGTGTTTAAAGATTTCGTCTCTTTGAACAAACACACCGCGGAACATTTCCAAAACTATGTTTGTGATACTTGTGGAGAAGGTTTTATTACCGAATCAGCCATGATTGCACACACTAAAGTACCTCACGAAAATAAGTATAACTGTAGTCGATGCGTTGCAACCTTCTCTTCGTTAGATGAAAGGAATCACCATGTTAAAACGCAGCATACAAGCACGCCTTACATGTGCGTCTACTGCAAAGACAAACCGCGATTCGCTAACTGGGAGATACGGAAAAGACATCTAATGGAAGTGCACAACTACAAAACAGGTGCAGACAAATACGAGTGTTCAATCTGCCAAAAGTCTTTCAAAACTAGATCTGGGAAATATAATCATATGGCAAGGACACATAGACTGAAAAAGGAATCTGAACTCAACTACCCATGCAACATTTGCCCCAAAGCGTTTACGACTAAACTGTTTTTGGATAAACATATTGCGAAGAAACATATTGTCTGA
Protein Sequence: MARNNARIIIQYATAYPFRLPEGSAVCVYCYESYDDPSLFRKHMDDEHKTFKLSSAFAHLHEGYIKTDCTVLRCRMCSENYKNVEEVALHLKNVHNRNINMNFDLGVQPFVVEKDRWLCAMCNAKFSNLRSLSRHTQKHFVKYTCDTCGKSYSTHTSLNHHIAYSHVTNERICRKCKKGFGSLAELREHLMISNRCCQHVCNICGARFASWVLKQNHLTEAHATPKKQYPCSECGQVFEKSDAWRVHFKIAHTDDHFQCSCCGRKFDNTDGVSMRQMAKRNAETMLQNSTLYPFRLQGKLILCVFCREKYEDPENFRCHVDENHKIFNLRVAFAHLGKGKDYLKVDCSNMKCKVCTKSFNTLNEIAEHVSIDHNCRKLNLSYDIGLQPYKLHRDRWQCYLCDQKLPTLSKLSRHTTSHYQKYTCDTCGRTYMTNDALKYHIKCRHTGAGEYMCRKCWQDFSTLEKKTEHFKTSKSCWPYCCFKCGDRFLSWEQKQKHLVEHHEQPQMTYDCPECGVKFDSRKRFFRHYKITHTDENFVCSFCGQQFRTKNTDGVSRIQMAKRNAETMLRCSTLYPFRLQGKLILCVFCREKYEDPENFRCHVDENHKIFNLRTAFAHLGKGKDYLKVDCSNMKCKVCTKSFNTLNEIAEHVSIDHDCKKLNLSYDIGLQPYKLHRDRWDCYLCDQKLPTLSKLSRHTTSHYQKYTCDTCGRTYMTNDALKYHIKCRHTGAGEYTCRKCWRNFSTLEKKTEHLKASKSCRPFCCLKCGDRFLSWEQKQKHLVEHHEQPQMTYDCPECGVKFDSRKRFFKHYKITHTDENFVCSCCGQKFHTKSGLDDHRLGHTGEKLFVCNVCTKAFSRNKSLKQHMWIHRSTLEIHGRSESEPKRKMVLVYQTPQRRNAELILNYSTAYPFKTRFSQILCAYCHDEFDILPNLREHMKTEHLNSDFKNVFYRTKDSLVKVDITQLKCKVCSQEIIDIDVLMTHLAHEHDLPVKFNTRFGVLPYKQNSDDNWLCVYCQKVIVDFVQFKRHVANHFMNFSCDKCGTTFVSDHSLRDHQRQVKCFRTSYKARNGRVLKPRTNAEIILQCSTATPFRTWKSNFNCVFCRVQSSDPCGLRSHMATRHVNYDVQAAFYKKLGKEFLKIDITDLQCKLCFMPIETFEVLTFHLKNDHQQPLTDDQLGVLPFRLNDGTIWKCTMCPNVFKDFVSLNKHTAEHFQNYVCDTCGEGFITESAMIAHTKVPHENKYNCSRCVATFSSLDERNHHVKTQHTSTPYMCVYCKDKPRFANWEIRKRHLMEVHNYKTGADKYECSICQKSFKTRSGKYNHMARTHRLKKESELNYPCNICPKAFTTKLFLDKHIAKKHIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -