Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376336.1:5137128-5139191[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0046 0.3 12.0 1.6 1 23 57 79 57 79 0.96

2 16 0.079 5.1 8.1 0.0 2 23 107 129 106 129 0.93

3 16 0.0095 0.61 11.0 3.5 2 23 150 172 149 172 0.94

4 16 2.6e-06 0.00017 22.3 0.7 1 23 177 200 177 200 0.97

5 16 0.0027 0.17 12.8 0.5 1 23 205 228 205 228 0.96

6 16 0.00075 0.048 14.5 0.8 2 23 231 253 231 253 0.97

7 16 0.023 1.5 9.8 4.7 2 21 260 279 259 280 0.94

8 16 0.00055 0.035 14.9 1.2 1 23 337 360 337 360 0.94

9 16 0.33 21 6.2 0.0 2 23 388 410 387 410 0.95

10 16 0.0021 0.14 13.1 0.1 2 23 433 455 432 455 0.95

11 16 3.2e-05 0.0021 18.8 0.1 3 23 462 483 460 483 0.94

12 16 0.12 7.8 7.6 2.6 2 23 488 510 487 510 0.94

13 16 0.00028 0.018 15.9 2.8 1 23 515 538 515 538 0.97

14 16 3.9e-05 0.0025 18.5 5.0 1 23 542 565 542 565 0.97

15 16 0.00023 0.015 16.1 0.3 2 23 572 593 571 593 0.96

16 16 4.6e-06 0.0003 21.5 0.8 1 23 599 621 599 621 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0046	0.3	12.0	1.6	1	23	57	79	57	79	0.96
2	16	0.079	5.1	8.1	0.0	2	23	107	129	106	129	0.93
3	16	0.0095	0.61	11.0	3.5	2	23	150	172	149	172	0.94
4	16	2.6e-06	0.00017	22.3	0.7	1	23	177	200	177	200	0.97
5	16	0.0027	0.17	12.8	0.5	1	23	205	228	205	228	0.96
6	16	0.00075	0.048	14.5	0.8	2	23	231	253	231	253	0.97
7	16	0.023	1.5	9.8	4.7	2	21	260	279	259	280	0.94
8	16	0.00055	0.035	14.9	1.2	1	23	337	360	337	360	0.94
9	16	0.33	21	6.2	0.0	2	23	388	410	387	410	0.95
10	16	0.0021	0.14	13.1	0.1	2	23	433	455	432	455	0.95
11	16	3.2e-05	0.0021	18.8	0.1	3	23	462	483	460	483	0.94
12	16	0.12	7.8	7.6	2.6	2	23	488	510	487	510	0.94
13	16	0.00028	0.018	15.9	2.8	1	23	515	538	515	538	0.97
14	16	3.9e-05	0.0025	18.5	5.0	1	23	542	565	542	565	0.97
15	16	0.00023	0.015	16.1	0.3	2	23	572	593	571	593	0.96
16	16	4.6e-06	0.0003	21.5	0.8	1	23	599	621	599	621	0.98

Sequence Information

Coding Sequence: ATGGTTGATGGCATCGAGAAATCTTTAGTAAAACTTAAGAAGACCACTTTGTTTTCAGATGAATATCCGCCAGGCCCGTACGACGGTTATACCTCTGAGCGGAGACGGAAAAACTTGCAAATTCTATTCAACAACACAACAATTATACCTTTCAAATGGCGCGGCAGGTATCTGTGTTTCTACTGCGGGAAAAACTATGCACTTTACCCGGATTTCAGAAAACATACAAAATCCCACGGATTGTGTTCCACCAAGGACTATTCTCTAAAAATAATCAAAGGAAATCACATTGAAATCAAGATAGATGTGTCCGAAATTGTCTGTGATATATGCAACGAACCATTCGACACATTCAATGATATCGTTGACCATTTGATCGTGAAACATTGCATGGAATACGATAAAAGTATAGACATACCGTTACAAGAGTACCGATTAGCAGATTGCCAATGTTTGTTCTGTGATCAGCATTTTACGTACTTCGGGAACTTAATAAGTCACGTGAACATATCTCACCCGCAAAACTGTTTCATTTGCGACGATTGTGGCATCACTTTTAATAAGAAAAGGGATTTGGTGACGCATCTGAGGACCTTCCATCGCAAAGGAGGGTATCCCTGCGATCAGTGCTCCAAAGTCTTCGAATCTGGCAGAGTTCTTCGAACGCACCAGAACAACTACCATTTCAGAAAATGTAGAAACTGCAGTCTCACTTTTGTGTCTTATACGTTGTTACAAAAACACATACAGGTGGATCACCCGGACGATGGTTGTCTGAAATGCAGTTACTGTAATAAGGAATGCCATTCAAAACAGGGCTTGAAACAGCATCAGAATAGATGCAAAGTCAAATTGGTCGCTCAAGGCGAACCGGTCGACAGCACTCCAGCGTTATTTTCCTCAGAATGCATTGAACCTAAAAAGAAGCAAAATGTACAACAGATCAGAGCAAACATCTTGTCCGTTCTTAACATGTCAACTGCCGTGCCTTTTAAGTTCTTCGCCAAATATTTCTGCTTCTATTGCTCGAAAAAGTTCGTAGACTTTGAGGAGCTTAAAGCTCATACGCTACTCGAACATCCTATATACGATTTGAAATCCAAATGCATTAAGAAATGTAAGGGTGAGAGAACTTGCGTGAAAATAGACATATCTTCTCTTAACTGCAAACTCTGTGGTGAACCTATAGACGATTTAGACGTTTTAATAGACCATTTAATAACGACCCACAATGCTAACTATGACAAATCCATCACAGGCTGTCTGGAGCCTTTCAGGATAATAAAAGACAACATACCTTGTCCAATATGCTCTCAAGTCTTCAGATATTTCAGCATTCTTCTGAGACATATAAATTCCGAACACAGTGACAATAATAGCATATGCGATTTCTGCGGACGAAGTTTCAAAAATGTTGCTAATTTAAATGTTCATATATCGTACGCTCACACGGGGTCGGTCCAATGCGATGTATGCTTATCTAAATTCAAAAACCAGTGGTGTCTCTCCCGGCATAAGGCGAAGTCTCACGACGCGAAAGACTTCAAATGCCCTAAGTGTCCCGAGATGTTTCAGTCCCAATATCATAAGCAGAAACACCTAATAAAAATCCACGATGTCGGTCACAAATGTTCCTTTTGCGGTCGAATGTTCACTAGGAACTCTTTCATGAAGGATCATATAAGGCGAACGCATTTGAAGGAGAGAAACGTTCCGTGTTCGGTGTGTAATGAGAAGTTTTTTGACAATTACCTATTAAAGATGCATATGGTTAAACACGAGGGGGATAGGAAGTTCACTTGTACGGTGTGCGGAAAGGCATTCCTTAGACGTAGCAATCTGTACTCCCATATGGAGATGCATAAAAAGTATGGGCATGTTCAGTTGGCGATTTGA
Protein Sequence: MVDGIEKSLVKLKKTTLFSDEYPPGPYDGYTSERRRKNLQILFNNTTIIPFKWRGRYLCFYCGKNYALYPDFRKHTKSHGLCSTKDYSLKIIKGNHIEIKIDVSEIVCDICNEPFDTFNDIVDHLIVKHCMEYDKSIDIPLQEYRLADCQCLFCDQHFTYFGNLISHVNISHPQNCFICDDCGITFNKKRDLVTHLRTFHRKGGYPCDQCSKVFESGRVLRTHQNNYHFRKCRNCSLTFVSYTLLQKHIQVDHPDDGCLKCSYCNKECHSKQGLKQHQNRCKVKLVAQGEPVDSTPALFSSECIEPKKKQNVQQIRANILSVLNMSTAVPFKFFAKYFCFYCSKKFVDFEELKAHTLLEHPIYDLKSKCIKKCKGERTCVKIDISSLNCKLCGEPIDDLDVLIDHLITTHNANYDKSITGCLEPFRIIKDNIPCPICSQVFRYFSILLRHINSEHSDNNSICDFCGRSFKNVANLNVHISYAHTGSVQCDVCLSKFKNQWCLSRHKAKSHDAKDFKCPKCPEMFQSQYHKQKHLIKIHDVGHKCSFCGRMFTRNSFMKDHIRRTHLKERNVPCSVCNEKFFDNYLLKMHMVKHEGDRKFTCTVCGKAFLRRSNLYSHMEMHKKYGHVQLAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -