Basic Information

Insect: Hofmannophila pseudospretella
Gene Symbol: -
Assembly: GCA_947369225.1
Location: OX376314.1:10822317-10832620[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 0.0077 0.5 11.3 1.5 3 23 619 640 618 640 0.96

2 22 0.38 24 6.0 0.3 1 22 1021 1042 1021 1042 0.95

3 22 7.4 4.7e+02 1.9 0.3 1 22 1083 1104 1083 1106 0.82

4 22 0.0019 0.12 13.3 0.2 3 21 1117 1135 1115 1136 0.94

5 22 0.055 3.5 8.6 0.3 3 23 1186 1207 1184 1207 0.96

6 22 0.0013 0.081 13.8 2.7 1 23 1213 1236 1213 1236 0.95

7 22 0.14 8.8 7.4 0.0 1 23 1262 1285 1262 1285 0.90

8 22 0.021 1.3 10.0 3.4 1 23 1290 1312 1290 1312 0.97

9 22 0.02 1.3 10.0 0.3 1 23 1318 1341 1318 1341 0.95

10 22 0.0011 0.073 13.9 1.3 1 23 1354 1376 1354 1376 0.98

11 22 0.0002 0.013 16.4 1.8 1 23 1424 1447 1424 1447 0.97

12 22 0.0017 0.11 13.4 3.5 1 23 1506 1529 1506 1529 0.98

13 22 0.0012 0.078 13.9 2.1 2 23 1555 1577 1554 1577 0.95

14 22 0.096 6.1 7.9 0.1 2 23 1583 1605 1582 1605 0.93

15 22 0.011 0.68 10.9 0.2 1 21 1649 1669 1649 1670 0.95

16 22 0.0014 0.087 13.7 0.6 1 23 1680 1702 1680 1702 0.93

17 22 0.00012 0.0076 17.0 0.4 2 23 1789 1811 1788 1811 0.93

18 22 3.6e-07 2.3e-05 24.9 1.4 3 23 1818 1838 1817 1838 0.98

19 22 0.012 0.79 10.7 0.9 1 23 1857 1879 1857 1880 0.94

20 22 0.2 13 6.9 0.0 1 23 1902 1924 1902 1924 0.97

21 22 0.023 1.5 9.8 0.5 1 23 1930 1953 1930 1953 0.95

22 22 0.00028 0.018 15.9 0.4 1 23 1962 1985 1962 1985 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	0.0077	0.5	11.3	1.5	3	23	619	640	618	640	0.96
2	22	0.38	24	6.0	0.3	1	22	1021	1042	1021	1042	0.95
3	22	7.4	4.7e+02	1.9	0.3	1	22	1083	1104	1083	1106	0.82
4	22	0.0019	0.12	13.3	0.2	3	21	1117	1135	1115	1136	0.94
5	22	0.055	3.5	8.6	0.3	3	23	1186	1207	1184	1207	0.96
6	22	0.0013	0.081	13.8	2.7	1	23	1213	1236	1213	1236	0.95
7	22	0.14	8.8	7.4	0.0	1	23	1262	1285	1262	1285	0.90
8	22	0.021	1.3	10.0	3.4	1	23	1290	1312	1290	1312	0.97
9	22	0.02	1.3	10.0	0.3	1	23	1318	1341	1318	1341	0.95
10	22	0.0011	0.073	13.9	1.3	1	23	1354	1376	1354	1376	0.98
11	22	0.0002	0.013	16.4	1.8	1	23	1424	1447	1424	1447	0.97
12	22	0.0017	0.11	13.4	3.5	1	23	1506	1529	1506	1529	0.98
13	22	0.0012	0.078	13.9	2.1	2	23	1555	1577	1554	1577	0.95
14	22	0.096	6.1	7.9	0.1	2	23	1583	1605	1582	1605	0.93
15	22	0.011	0.68	10.9	0.2	1	21	1649	1669	1649	1670	0.95
16	22	0.0014	0.087	13.7	0.6	1	23	1680	1702	1680	1702	0.93
17	22	0.00012	0.0076	17.0	0.4	2	23	1789	1811	1788	1811	0.93
18	22	3.6e-07	2.3e-05	24.9	1.4	3	23	1818	1838	1817	1838	0.98
19	22	0.012	0.79	10.7	0.9	1	23	1857	1879	1857	1880	0.94
20	22	0.2	13	6.9	0.0	1	23	1902	1924	1902	1924	0.97
21	22	0.023	1.5	9.8	0.5	1	23	1930	1953	1930	1953	0.95
22	22	0.00028	0.018	15.9	0.4	1	23	1962	1985	1962	1985	0.96

Sequence Information

Coding Sequence: ATGAATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGTGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCTGGACCCCCCGTCCTCGCTTCGAAAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAATGACGACCTGCCAACAAATGTGTGCAGGAAATGCATGGATAATGTCAACAACTGGCACATATTTAAGACAGTGTGTGAAAGGACACAAAACAAACTACAGTCTCTTATTAAAAAGGATGGCAGCCAACTAGAAGAGGTGAAAGTGAAAAGTGAACCATTTTCAGATGAGGCCTATGATGATGGAGTGGTTATTGATGGATCATACCCCGATCCAGAGAGTGCTGGTCCGTCTGCTAAATTGCAGCAGGAAGGTCCACCCATCTTGACTTCACTGGGACTCACACCGAGGAGTGATAAGAAATATGTGGATCCTCGAATGGATTGGCATCGGGTTCATGCAATATTGGACATAGTTCAAGATGATGAGGTCATTGACTCTCTGCAATCCACTGAAGAATGTGATGTCCTGCAGCAATCTGACCATGATTCTGAAACAGATGCTGAGCTGAAATCTGATATAGATGATGATTTTGTAGATTACAAAAATGGCTACTTATGCAGAAACAAAAAAATTATATCAAAAAATCCTAAATTATCATCTGCTGCTAACATGACTAAGATTAGGGAATCTAGGAATCAGAGAAAACGTAAAACTAAGTTACAAAGACATTGCGCTCACCCTAAAAATGCATGGCAAATGTTATTCACTGATGATTTGCTTGAACTAATTGTAACAGCCACAAACGAAAACCTTGCCAAAAAGGAGAAAAACATTTCATCATTCACAAATGCTAATGAAATAAAAACACTTATTGGTATACTATACTTTCACGGTATAATGAGGGCAACACATCAGAAATGCATTGACCTTTGGCACAATGACTATGGAACTGTATGCATCAAAAATGCAATGAAGTATGATAGATTTAAGTTTCTTTTGGAGAATTTGAGTTTCTTTGACAAAGAGGATGACGATAGTATTGTACAGTTTGATATTATGAAACGAATGCGAAAGGTATTCGAAATATTCGCCATGAATTGCAGAACTGTCTTCGACACGGATAATGTCTTGGCTATTGATGAGATCATGGTACCGGTTTATGGTCCATGTCCATTCCGATATAATATCGAAAATAAACCATTGAAATGTGGTATTAAGATGGTACTGCTGGTTGACGCATCAAATTTTTATGTCAACAACTTGGATGTTATTACAGATCCTTATTTTGAAGCAGATGAGATTGTCAATAAGTTAGTTCAACATCTGGCAGGTACAGGAAGAACTATCGTCATGGACAGTTGGTTCACATCATCATCACTGATTGATAAGCTGAAAACTGAATATAAATTGTATACCATTGCGGCAGTCAATCCTAAGGATGAAATAATACCACCAGTGTTTCTGTTAAAATACAGAAAATCTGGCACTACGATGACTGGATTCATTGATAATGATGTTACGCTGACTTCTTATGCAAATGCAGAATCGAAATCTGTAAACATTTTGACTAATGAACCCAGGCTTTATAAGAGAGGACAAGTCAACTATACAACAGCAGTAGCTGTTTATAAAAAGAATCAGAGTGCTGTTGAAGGTTTGGAGAGTGATAAGGAGGAGGAAGAGGAGGCGGAAGACGTGAATGATTGGATAGCGCCGTATAAGGAGATGCCTGCCATTCCTGAGGTGTCCATCATGGTGAGGCGTCCCACCGGAGAAACCCTGCAGTCTCGCCAAGGCATCCAGCAGCTCGCGTCCAAGGACTGCCTCGTATGCGGCCGTTCGTACAGATACTCGCACAACGCCAGGCGTCACGAACTCACCTCTCACGGCTTCGATAGGTACACAAACAAAATAACTACCAAAAAAACACATTCCCACAAGCAACCGAAACTGAGACCAAACCCTTTCAACCCTAAAGCACGATTATTGCCGAACCCGATAAGCCACAAAATGCAACTCATCCCCAAACCTGTACCAGCCAAAATTATGCAGCAGAAAATTATTGCTCCACCAAAACCTATACCTATAAAACCATCTAAACTACCACAAAATAATTTGCCCTATCCTCTGCGCATTAAAGCTCTTAAAGATTTACAAATAAAGAAAAAAGAGCCACAAATTCTGAAGACTTTGCTCACTTCAAAACCCGAACTTTTAGTATCTGAGCCTGAGATTATGAATTCTGCACCAGAGAGTCCTGAAACTCTGATATCTGAACCAGAAATAGCGTCCTTCCAAGTCGAGACTATTCTGTCTGAGCCCGACGGATTTGACCACCAAAATAGTGATGAAATTGATGGAGAGGTACACAATAATCAAAATTATGATACAGTTGATATGGATTCTGATAATGAAATAGAGATTGCACGACAGAAAGAGAAAGAAGATAACGAAGAAGATCATGTTGATCACGATGAGACGGAGGAAGATATGCAACACGAAAACGAGGGTGAAAATGACATGGAAACTCACCAAGATGATGACGGAGAGCACAATGAAGATGAAGCTGAAAATCAAGAAATTGATAACGACGAGCCTAAAGCTGACGACGAAGTAAAAGAGGCCGAGGACGGCATCGAGGAGAGGGACAATGGTGATCCAGAGGAAAACCATGAGGAGAATGAAGATGAATACGATGAGGAGCTCCCACTCCCACCGATAGCACCAGTTGTTGAGATAAATGAGGACTTGCAAAATACCTCGTGTAACAGCGAAATAAACGAGGAAGAGGAAGAAGAACTTGACGAAACAGGTGCTGTCAATGATACTGTAGATGGGGAAGATAATGTTAAGGAACTTGATCCCGACAAGACATATGTCACGAAGACTCAGAGGGATTTCATAGTAAGATATCGCGATATTATCGAACAGATCAACACCAAACGATGTCTTTGTTGCGACCGAGAACACCCTCGCAGGAAAGCAGTTATTCAACACTTACAAAAGAATGGACACAAAGTTCCAAAACATACATGTTACAATTGTGTGGTTACCTTCGGTCATATTGGAGCTTTGTTAAGTCACATGAGATCCAATTCCTGCACTAATTTGTGGAAAATTATTTACAACGAGAACGGTATAACCGACGATTTGGTCCTTGAAGACGAACCTAAAACCAAAGTTCAGTATAAAGATATTTTTAATGCTAGATCTTATGCGTGTAAACTCTGCCCAGCGAAATTCCAGCTGAAACAATTTATAATGAAACATGTTTTAGACGTCCACGAAGATGGGCAGTCTAGAATTCAGCTAGCTTGTGTTCACTGCGGAGCGAGATTCAAAGATAAGGCTATGTGGAAAAAGCACATTCGTAACGGGGACTGCACAGTTCACATAGCTTGCGACTTGTGTTCGGATAAGTTTGGAAACATGCAAGATTTCAATGATCACGCTTTAGCCGTGCATGCAGGAAGCTTCGATCAAGACAGTCAGAGCAAATGCGTGGACGGTAGGCCTACGGACTGTCCGTTATGCGGAAAGAAGAACGGTACCTACCAGAATTTGGTGAAACATTTGAAAATGATTCATAGTGAGGATAAACCTCATTACTGCAAACATTGCGACTCTAAATTCGAACAAGCTGCTGATCTTAACAAGCACATTTATATGGTGCATTCTGATAAGGCTTTTGGTATTCAAAGCGTTGAACCGGATATGTCACTTGTGAAGGAGGAAGCTGAAGAATACCATTATTCTTGCACAGAATGTAATGCAATATTTGAAACCGTCGACGCTTGGACTGACCATCAGGTTGCAGAACATAATCAGGTCGCACATCATTGTGATCAATGTGAAAAGAAGTTCCTGAGGCCATCGGAGCTGGCAGAACATAAGAATACGCACTTGCGAGTGAAGTTCTATCCTTGCAGCGTCTGTACTAATTCTTACAGTACCCCACAGAAGCTATCGGAACACGTGCAGCAAAATCACCCTGGAGCTGGTGCAGTGGCTTCCCTCGATTCGGAATTTTATTGCGACATATGCATCAGATCATTCAAAAGTCGTCAGGCGTACTCCAATCACATGCGTATTCACGCTAAAGTACCCACTACCAATAGGAAACCAGGAGAATCGAAAGGTTTTGCACCACAGATAATTGGGAAACCTATTCAACAATTCAATGTTGCCCAACAAAGTTTCGTCTTCAAGCCAAATTGTAACGTGCCCAACGCTCCGTACTCCTGTGACATTTGTGGGAAAGGGTTTATGCATAAGAAAAATATATGGAAACATAAGAAAGTACTACATGCTGACATTCTGAACGACAGAAATGACAGTGAAGAGAATACTATGCACGCTTCTACCGAGGAGGACGAGTACAATGTTGATGAGAATGGCACTCTCACGACTCCGCAGTTCAACAGTTTCAACTTCACTAACTTCGCGAATAACACTCAAGCTCAACAGACACAACCGGAGGTCTACACATGTGATCTCTGCTACCAGAGATTTACGTTGAGAGATAGCTTGAGGAAGCACAAGCGCTCTAAACACGGAATTATAAATCCCCATGTCGGCATCAGTTCTGAAACTCAAACACAAGCGCCTATAGGCGAAGGCTCGAGGTCCAGTTGCACCATCTGTAAGATAACTTTCTCTGACAAAAAATCTTATTATCGTCACCGAAAGAACGTCCACAAATCCACAACGCAGATGTGTAAAATATGCGGCAAACCTCTCAACTCTACTTTGGAGTTATACGAGCATTTAAAAGCTGCTCATGCTCGTGAGCTATTAGGCTACAATGCTAATCAAGGACCCAGTAAGTCGCAAGAAGTGGCACAGGAAATGGAAATAGAGTATGAAGGTGATCAAGATTCCATCGACCCCAGCGTGGACTACCAAGCTCGATACCCGTGCGACACTTGCGGAAAACAATTTGTGGGTCTCCTCGCGTTGCAGAACCATCAATGTGTCACGCAAATATCATCGCAGCCGCTAACATTCGATTGTGAGATTTGTCATAAAAGTTACACATCCATCGCGGCATTGAAGAGTCATCGCGGCTGGCATCTGCGCTCACCTGACGGCAAGGCAGCCGCTAATAATAGCGGTTTGTGGATGCCTCAGCACAAAGTGACTAATAAGGTCAGCAAACATGAGGTCGTCGACCCGATCCAACTCGCTCGTGTCTCGCACTCGACTCCTACGACCTCAGCTAAAAGGAGACTTCCACCAGAAGTAGAAGTCACTGTCGTCAATCCTAATAAAAAATTACGTTCCGACGATTCAGTAGAAATGGACCAACAGAACAGTACTATGGATGACAAATATTGTACGATATGTGACAAGGAATTTACTAAAAGAGCGGCGTACCAGCGCCACATGGATGAGGTGCACCAACCGAATTCGGTGTTTTGTCCGGTCTGTGATAAGAGTTTCACTCGCAAGTCCACCCTTCTCGTGCACATGAAGAAGCACTACGAAGGCGGGGAAGGCAGTTCGTCTGCAACCGGTCAAATGGATGATGAGATGCATTCCTGTGACCTCTGCGGTGCCCAGTACGATAACCCGCAGGCGCTGAGGGCTCACCGGGTGAGGCACCACGGGGAGGAATCGGAGCACGACTCGGAGGACGACAGCGGCGGCAATGCGGCACCCCCGGGGGAGTTCACGTGCGCGCAGTGCGGGGACGGCGTGGCCACCCCGCGCGACCTCATCGCCCACCGCACAATGCACGCAACCCCCACAAAGTACTTCTGCAACATTTGCAAAGTCTATTTCGCTAGGGCTCTGGACCTGTCCTCTCACACTCGGGCGCGGCACGCCGATAACGACAAATCAGCCACGTTTCCCTGTGCCATGTGCGACCGGTTCTACATGAACAAAAAGAGTTTGCAGCGGCACATCGAAATGGCCCACTGA
Protein Sequence: MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSGPPVLASKIKDCVSVQINENDDLPTNVCRKCMDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEEVKVKSEPFSDEAYDDGVVIDGSYPDPESAGPSAKLQQEGPPILTSLGLTPRSDKKYVDPRMDWHRVHAILDIVQDDEVIDSLQSTEECDVLQQSDHDSETDAELKSDIDDDFVDYKNGYLCRNKKIISKNPKLSSAANMTKIRESRNQRKRKTKLQRHCAHPKNAWQMLFTDDLLELIVTATNENLAKKEKNISSFTNANEIKTLIGILYFHGIMRATHQKCIDLWHNDYGTVCIKNAMKYDRFKFLLENLSFFDKEDDDSIVQFDIMKRMRKVFEIFAMNCRTVFDTDNVLAIDEIMVPVYGPCPFRYNIENKPLKCGIKMVLLVDASNFYVNNLDVITDPYFEADEIVNKLVQHLAGTGRTIVMDSWFTSSSLIDKLKTEYKLYTIAAVNPKDEIIPPVFLLKYRKSGTTMTGFIDNDVTLTSYANAESKSVNILTNEPRLYKRGQVNYTTAVAVYKKNQSAVEGLESDKEEEEEAEDVNDWIAPYKEMPAIPEVSIMVRRPTGETLQSRQGIQQLASKDCLVCGRSYRYSHNARRHELTSHGFDRYTNKITTKKTHSHKQPKLRPNPFNPKARLLPNPISHKMQLIPKPVPAKIMQQKIIAPPKPIPIKPSKLPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSEPEIMNSAPESPETLISEPEIASFQVETILSEPDGFDHQNSDEIDGEVHNNQNYDTVDMDSDNEIEIARQKEKEDNEEDHVDHDETEEDMQHENEGENDMETHQDDDGEHNEDEAENQEIDNDEPKADDEVKEAEDGIEERDNGDPEENHEENEDEYDEELPLPPIAPVVEINEDLQNTSCNSEINEEEEEELDETGAVNDTVDGEDNVKELDPDKTYVTKTQRDFIVRYRDIIEQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRIQLACVHCGARFKDKAMWKKHIRNGDCTVHIACDLCSDKFGNMQDFNDHALAVHAGSFDQDSQSKCVDGRPTDCPLCGKKNGTYQNLVKHLKMIHSEDKPHYCKHCDSKFEQAADLNKHIYMVHSDKAFGIQSVEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCTNSYSTPQKLSEHVQQNHPGAGAVASLDSEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGESKGFAPQIIGKPIQQFNVAQQSFVFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMHASTEEDEYNVDENGTLTTPQFNSFNFTNFANNTQAQQTQPEVYTCDLCYQRFTLRDSLRKHKRSKHGIINPHVGISSETQTQAPIGEGSRSSCTICKITFSDKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGPSKSQEVAQEMEIEYEGDQDSIDPSVDYQARYPCDTCGKQFVGLLALQNHQCVTQISSQPLTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTNKVSKHEVVDPIQLARVSHSTPTTSAKRRLPPEVEVTVVNPNKKLRSDDSVEMDQQNSTMDDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSSATGQMDDEMHSCDLCGAQYDNPQALRAHRVRHHGEESEHDSEDDSGGNAAPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKYFCNICKVYFARALDLSSHTRARHADNDKSATFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -