Hpse014320.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376338.1:862053-870417[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.2e-06 7.8e-05 23.3 3.6 1 23 176 198 176 199 0.96 2 17 1.6e-06 0.0001 23.0 2.4 2 23 227 248 226 248 0.97 3 17 0.0002 0.013 16.3 5.8 1 23 254 276 254 276 0.98 4 17 1.1e-05 0.0007 20.3 2.9 1 23 282 304 282 304 0.98 5 17 6.6e-05 0.0043 17.8 1.8 1 23 310 332 310 332 0.98 6 17 1.1e-05 0.0007 20.3 2.2 1 23 338 360 338 360 0.98 7 17 0.00011 0.0072 17.1 2.1 1 23 366 388 366 388 0.98 8 17 2.7e-06 0.00017 22.2 3.9 1 23 394 416 394 416 0.98 9 17 5.4e-06 0.00035 21.2 2.7 1 23 422 444 422 444 0.97 10 17 0.00018 0.012 16.4 5.7 1 23 450 472 450 472 0.98 11 17 9.6e-07 6.2e-05 23.6 0.8 1 23 478 500 478 500 0.97 12 17 0.00012 0.0077 17.0 4.5 1 23 506 528 506 528 0.98 13 17 0.00024 0.015 16.1 1.1 1 23 534 556 534 556 0.96 14 17 1.1e-06 7.3e-05 23.4 0.9 1 23 562 584 562 584 0.97 15 17 0.00018 0.012 16.5 1.8 1 23 590 612 590 612 0.98 16 17 4.8e-05 0.0031 18.3 3.1 1 23 618 640 618 640 0.98 17 17 0.00014 0.0093 16.8 3.4 3 23 648 668 646 668 0.98
Sequence Information
- Coding Sequence
- ATGTCGGAAATATGGAATCTAAGCGCCTTGTGCCGCTGCTGCCACAAGGACGGCCACTTCAAGAGTCTGCAGGCGCCCGACGAGTGCGGCGACAGTACTGTATATTGCGAGATGCTGCGGGACACTTTCGGAGTCATTATAACCCATCCACCGCAGGAGGTGAGCTACTCGATATGCGGCGAGTGCGTCGTTTCTCTGCGTAACGCTGCACTTTTTAAGCGCCAAGTGCTGGAGTGCGAGCACAAGTTCGACGAATACTGTAAAAGCTTTGTCAGAGATGAACAGGTCTTCGGCATACCGATTGACTACAAAGTCAAGATGGAACCGGATTCAGTTGATAATGACTTTGACGCCAGCTTCGACGATTCCACTAAACTGATCAAAAGCGAAGAAGAAAATGATGTAAAGGTTTCCAATTCACCGCCTCAGTCTACCAGTGGACTCCACAGTCAACACCAAACTGCTTCCACCCGACGCAATCCCCACGATAAATCTCTATCCAGAGACGCACTCAGGAGTTCAATGTACACATGCGATACTTGCAACAAAAAATTCCGGACCCAAAATGGACTTATAAAGCATATTAATACGCATCACAACACATCAGCTTACCCCATTATTAAAAAACACTCCAAACGGAAACGTATGCAGATGAAACACattcataccggagacaaatcttgtgacatttgtaaaaagcagttcactagaaagggaaatcttgttaaccacagacgcactcacaccggagaaaaaccattctcttgcgatatctgtaaaaagcagttcactgcaaagtcgaatcttattcaccataaacacactcacactggagaaaaaccgttctcttgcgatatctgtaaaaagcagttcacttggaagtcgaatctttttaaccatcagcgcacacacattagtgaaaagcgattctcgtgtgatgtttgtaaaaaacagttcacttggaagtcgaatttcataaaccatcaacgcattcacactggagaaaaaccgttctcgtgtgatatctgtaaaaagcagttcgctcagaaatcgcatgttatcaggcatcagagtattcatatgaaaaaagaattcttctcttgcgacatatgtaaagaacagtttagagagaaatctgatcttattgagcatcggcacactcacaatattgaaaaaccattctcttgtgagatttgtaacaaacagtttatgaggaaatcgcatcttaaagagcaccaactcacacattccggagaaaagccgttcgcgtgtgacgtttgtaacaagcggttcattcggaagtcgtatctaacagaccatttgcacactcacaacgccgacgcgccgttttcttgtgatatttgtaacaagcagttcgttaaaaaatctcatttcgtagagcatcaacacacgcattctggagaaaaacctttcgcatgtgacgtttgtaacaagcggtttattcgcaagtcttatctcttagagcaccaacgcatacacaccggagaaaacccattctcgtgtaatatgtgtgagaagcagtttaacaagatgtctaatcttaaagaacatcaacacactcatactgaagaaaagccatttgcgtgtgaaatttgtaacaaacggttccttcgcaagtcgtatttaatagaccaccaatatagtcacactgaacagaaaccgttcttctgtgatttctgtgggaagcagttcgctaagcggtcgaatctcgttgcccaccaacggatccacactggagaaaaaccttacacgtgtgatatttgtaaaaagcagtttactcaaaaaacgcaagctattatacacaataggaaacatactggggaaagaccgttttcgtgtgaattttgtgtgaaacatttcattacgaaggcgcagcttataaaccatcgccggactcacacgggggaaaagccgttcggttgtgatatttgtaaaaaacagtttgctcagaaaactcatcttgacaggcatcggcggaatcactcacacatttga
- Protein Sequence
- MSEIWNLSALCRCCHKDGHFKSLQAPDECGDSTVYCEMLRDTFGVIITHPPQEVSYSICGECVVSLRNAALFKRQVLECEHKFDEYCKSFVRDEQVFGIPIDYKVKMEPDSVDNDFDASFDDSTKLIKSEEENDVKVSNSPPQSTSGLHSQHQTASTRRNPHDKSLSRDALRSSMYTCDTCNKKFRTQNGLIKHINTHHNTSAYPIIKKHSKRKRMQMKHIHTGDKSCDICKKQFTRKGNLVNHRRTHTGEKPFSCDICKKQFTAKSNLIHHKHTHTGEKPFSCDICKKQFTWKSNLFNHQRTHISEKRFSCDVCKKQFTWKSNFINHQRIHTGEKPFSCDICKKQFAQKSHVIRHQSIHMKKEFFSCDICKEQFREKSDLIEHRHTHNIEKPFSCEICNKQFMRKSHLKEHQLTHSGEKPFACDVCNKRFIRKSYLTDHLHTHNADAPFSCDICNKQFVKKSHFVEHQHTHSGEKPFACDVCNKRFIRKSYLLEHQRIHTGENPFSCNMCEKQFNKMSNLKEHQHTHTEEKPFACEICNKRFLRKSYLIDHQYSHTEQKPFFCDFCGKQFAKRSNLVAHQRIHTGEKPYTCDICKKQFTQKTQAIIHNRKHTGERPFSCEFCVKHFITKAQLINHRRTHTGEKPFGCDICKKQFAQKTHLDRHRRNHSHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -