Hpse000463.1
Basic Information
- Gene Symbol
- -
- Assembly
- GCA_947369225.1
- Location
- OX376336.1:5131526-5132728[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.077 70 3.9 0.2 13 43 29 56 16 57 0.74 2 8 0.084 77 3.8 0.0 14 43 83 111 77 112 0.81 3 8 0.065 59 4.2 0.3 18 27 190 199 174 205 0.82 4 8 0.73 6.6e+02 0.8 0.1 18 32 218 239 214 244 0.71 5 8 4.3e-05 0.04 14.3 0.3 12 43 242 270 231 271 0.89 6 8 0.017 15 6.0 4.9 5 26 264 285 264 298 0.88 7 8 0.0024 2.2 8.8 3.0 14 38 301 322 290 327 0.82 8 8 0.0012 1.1 9.7 6.6 15 44 330 356 317 356 0.86
Sequence Information
- Coding Sequence
- ATGGAAATGATACGTAAGTTGCTTATAAAACGAAGAAATGTTGAATATGTGCTGCAATACAGCAACGCCACGCCCTTTCTATGGAACAAGGGGAAATTTCGATGCTTCTATTGCTCTGAACATATGAAGAACCCAGCCACTTTGAGAGACCACACTGAAAGAGTTCACCAGTTCGCAAATCTAGAACTCGTGGTCCACGATAGAACCAAAAATAATAGGGACAAAGATGCTGCAGTCAAAATCGACGTGACAGATTTGACTTGTAAACTATGTCCGAATCCGGTAGTTGTAAACAATTTGGAGCAACTAATACACCATTTGATCATAACTCATGATGCTGAATACGACATGAGCGTCCCGAATTGTCTTTTACCTTTCACGTTGGACAAAGATCAGCCTACATGTCCGACTTGTAACATGAAGTTCGTTTTCTTTGAGTATCTCCTGCGACATGCTAATAAACACCACTTGTCTCACGAATACATGTGCGATACATGTGGAACCAGTTTCCAAGGTGAGAATCATCTGAGAATGCATAAAAGATACTATCATAAAGAAGGCGGGTATCTGTGCCAATATTGTGGGGAAAACCTTTCGACGCTGTCAAAAAAGATTTTGCATGAAAAGAATGTTCATTTAGCGAATTTGCTGACGTGTCCTCATTGTCCAGAGACTTTTAAAAGTCCGTATCTCAAAAAGCTGCATTTAGCGAACACCCACGGAATGGAAGAGTTGAAAATCAAGTGTCCGTACTGCCCAAAAGTTTTCCCGCAGGAGAGTATAATGTCTCGACATATGAGAAGAGTACATTTGCGGGAAAAGAACGTCGAATGTGAGATTTGCAAGGAGAAATTCTTCGGCGCCTACGACTTGAAATTACACATGGTCAGACATAATGGTGAAAAGAAATACACTTGCGAAGTTTGCGGGAAAAAGTTCTCGAAGAAAAGCAATTTGAATAGCCACGCCATTATGCATTCGGGCGTAAAGAAATACGTTTGCGAAATTTGTAATAAGGCGTTCAGACATCAGCCGAACTTGAGGCATCATATGAGGAATCGCCATCCTGTATGCGATCAGCTGAATGGAATCCAGATTGGGACGACTGATGATATAGATGACACAGAAATTATTCAGATGGAGTTTATCGGGGATGAGTTAGAAGGCGCTGAAATCACGGGGCAGTACATCAATGTCGAGTGA
- Protein Sequence
- MEMIRKLLIKRRNVEYVLQYSNATPFLWNKGKFRCFYCSEHMKNPATLRDHTERVHQFANLELVVHDRTKNNRDKDAAVKIDVTDLTCKLCPNPVVVNNLEQLIHHLIITHDAEYDMSVPNCLLPFTLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHEYMCDTCGTSFQGENHLRMHKRYYHKEGGYLCQYCGENLSTLSKKILHEKNVHLANLLTCPHCPETFKSPYLKKLHLANTHGMEELKIKCPYCPKVFPQESIMSRHMRRVHLREKNVECEICKEKFFGAYDLKLHMVRHNGEKKYTCEVCGKKFSKKSNLNSHAIMHSGVKKYVCEICNKAFRHQPNLRHHMRNRHPVCDQLNGIQIGTTDDIDDTEIIQMEFIGDELEGAEITGQYINVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00994619;
- 90% Identity
- iTF_00807018;
- 80% Identity
- iTF_00807018;